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Browse more than 65,000 articles authored by our scientists over the past 100+ year history of the USGS and refine search by topic, location, year, and advanced search.

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Environment, taxonomy, and socioeconomics predict non-imperilment in freshwater fishes Environment, taxonomy, and socioeconomics predict non-imperilment in freshwater fishes

Freshwater fishes are among the most threatened taxa, yet conservation assessments remain incomplete for many species. Freshwater fishes provide essential ecosystem services such as food security, recreational opportunities, and cultural significance. Despite heavy alterations to freshwater ecosystems, the reasons for species’ sensitivity and resistance to imperilment are unclear. To...
Authors
Christina Amy Murphy, J. Andres Olivos, Ivan Arismendi, Emili García-Berthou, Sherri L. Johnson, Jason Dunham

Assessment of antibiotic resistance genes in Caribbean corals, including those treated with amoxicillin Assessment of antibiotic resistance genes in Caribbean corals, including those treated with amoxicillin

The decimation of reefs from stony coral tissue loss disease prompted the use of a topical amoxicillin treatment to prevent coral mortality. Application of this treatment led to concerns about unintentional impacts such as potential alteration of the coral microbiome and possible spread of antibiotic resistance. We used three different methodologies—microbial RNA sequencing, 16S rRNA...
Authors
Karen L. Neely, Christina A. Kellogg, Julie Jenice Voelschow, Allison R. Cauvin, Sydney A.M. Reed, Ewelina Rubin, Julie L. Meyer

Breeding shorebird surveys in the Arctic National Wildlife Refuge, Alaska, suggest population declines over two decades for most species Breeding shorebird surveys in the Arctic National Wildlife Refuge, Alaska, suggest population declines over two decades for most species

Shorebird populations are declining globally but it generally remains unclear how those declines translate to changes at the regional scale. We conducted the first longitudinal surveys of breeding shorebirds in Alaska under the Program for Regional and International Shorebird Monitoring (PRISM), resurveying the Coastal Plain (1002 Area) of the Arctic National Wildlife Refuge (NWR) in...
Authors
Stephen C. Brown, James E. Lyons, Sarah T. Saalfeld, Shiloh Schulte, Christopher J. Latty, Metta McGarvey, Lindall R. Kidd, Kirsti L.K. Carr, Richard B. Lanctot

Revisiting chlorophyll a thresholds for San Francisco Bay: Insights from observations of phytoplankton molecular abundance Revisiting chlorophyll a thresholds for San Francisco Bay: Insights from observations of phytoplankton molecular abundance

Harmful Algal Blooms (HABs) are a hazard for coastal environments worldwide; identifying screening thresholds of chlorophyll-a (chl-a) associated with increased risk of HABs is a management priority. Molecular surveillance of coastal phytoplankton and bivalve biotoxins could be used to link chl-a with HAB risk, but requires an understanding of whether the HAB risks increase uniformly as...
Authors
Daniel Killam, Keith Bouma-Gregson, Martha Sutula, Raphael Kudela, James Hagy, Stephanie Anderson, David Senn

Constructed value of information with iterative scoring and parametric uncertainty to identify management-relevant research priorities for a declining raptor species Constructed value of information with iterative scoring and parametric uncertainty to identify management-relevant research priorities for a declining raptor species

Constructed value of information (CVoI) is an expert elicitation decision-analytic tool used to prioritize sources of uncertainty based on their potential to improve decision outcomes if resolved. Despite increased application of CVoI, the robustness of CVoI prioritization of sources of uncertainty relative to differences in expert elicitation and scoring methods has not been evaluated...
Authors
Kristin P. Davis, Mitchell J. Eaton, Emily R. Bjerre, Hillary M. White, Clint W. Boal, Jennifer H. Herner-Thogmartin, Orin J. Robinson, Abigail Jean Lawson

Habitat-based predictions of bridle shiner (Notropis bifrenatus) in the northeastern U.S. Habitat-based predictions of bridle shiner (Notropis bifrenatus) in the northeastern U.S.

We sought to assess bridle shiner (Notropis bifrenatus) habitat associations at local and regional scales across southern Maine and New Hampshire. We used local habitat data at 95 Maine sites to predict occupancy with classification and regression trees (CART). We then used ensemble species distribution models (SDMs) to model the historical (1898–2008) and current (2009–2022) ranges of...
Authors
Lara S. Katz, Stephen M. Coghlan, Matthew A. Carpenter, Michael T. Kinnison, Joseph D. Zydlewski

Inference of pattern-based geological CO2 sequestration and oil recovery potential in a commingled main pay and residual oil zone CO2-EOR flood Inference of pattern-based geological CO2 sequestration and oil recovery potential in a commingled main pay and residual oil zone CO2-EOR flood

Several detailed studies have shown that residual oil zones (ROZs) can present significant resources for additional hydrocarbon recovery as well as subsurface carbon dioxide (CO2) sequestration via enhanced oil recovery by injecting CO2 (CO2-EOR). Field development strategies included new wells drilled dedicated to main pay zones (MPZ) and ROZs, or existing wells in MPZs deepened to ROZs...
Authors
C. Ozgen Karacan, Emil Attanasi, Sean T. Brennan, Peter D. Warwick

Experimental translocation of a rare Hawaiian tree reveals disparity between remnant and potential habitat Experimental translocation of a rare Hawaiian tree reveals disparity between remnant and potential habitat

Translocation is implemented worldwide as a conservation strategy for rare and endangered plant species, yet the factors that influence long-term success remain poorly understood. Remnant wild populations are often used as indicators to model habitat preference and select translocation sites, but such populations may be refugia from past biological or anthropogenic stressors and...
Authors
Julia Douglas, Mingzhou Bai, Lucas Berio Fortini, Stephanie G. Yelenik, Nina Rønsted

Intraspecific contact among white-tailed deer: A literature review and chronic wasting disease case study Intraspecific contact among white-tailed deer: A literature review and chronic wasting disease case study

White-tailed deer (Odocoileus virginianus) are a valuable game mammal in the eastern United States necessitating detailed understanding of disease transmission. We conducted a literature review on intraspecific contact (i.e., interactions wherein disease transmission may occur) among deer. From 69 studies, we identified five themes underlying research on intraspecific deer contact...
Authors
Nathaniel H. Wehr, Kristin J. Bondo, Christopher S. Rosenberry, David Stainbrook, Bret D. Wallingford, W. David Walter

Groundwater quality near an oil field in a stream-dominated recharge setting, California, USA Groundwater quality near an oil field in a stream-dominated recharge setting, California, USA

Alluvial valley aquifers are important sources of water supply in many areas but effects of co-located oil and gas development on these resources have not been widely reported, especially in settings where recharge is dominated by stream infiltration. Interpreting the presence of geochemical indicators in the context of hydrology, geology, and other factors provides a more complete...
Authors
Jennifer S. Stanton, Michael J. Stephens, Matthew K. Landon, David H. Shimabukuro, Andrew G. Hunt, Justin T. Kulongoski, Isabelle M. Cozzarelli, Theron A. Sowers

Monitoring changes in Landsat thermal features in urban and non-urban interfaces from 1986 to 2023 in two international urban centers: Implications for climate and global issues Monitoring changes in Landsat thermal features in urban and non-urban interfaces from 1986 to 2023 in two international urban centers: Implications for climate and global issues

Rapid urbanization is reshaping thermal environments worldwide, with the strongest impacts occurring at the interface between urban and non-urban areas. Impervious surfaces, as key indicators of urban expansion, are critical for monitoring urban growth and assessing surface urban heat island (SUHI) effects. Land use and land cover change (LULCC) provides an essential link between urban...
Authors
Hua Shi, Christopher P. Barber, Kristi L. Sayler, Kelcy Smith, Reza Hussain

Tracking baseflow supply dynamics using SWOT data from small groundwater-dominated lakes Tracking baseflow supply dynamics using SWOT data from small groundwater-dominated lakes

In situ surface-water monitoring strategies are biased towards larger perennial streams and lakes and are generally not designed to track mechanisms of baseflow supply contributed by the dynamic storage of aquifers. Additionally, small (
Authors
Martin A. Briggs, Merritt Elizabeth Harlan, David M. Rey, Danielle K. Hare, Denis R. LeBlanc, David F. Boutt, Michael N. Gooseff
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