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Browse more than 65,000 articles authored by our scientists over the past 100+ year history of the USGS and refine search by topic, location, year, and advanced search.

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Using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for Dall’s sheep Using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for Dall’s sheep

Objectives Dall’s sheep (Ovis dalli dalli) are important herbivores in the mountainous ecosystems of northwestern North America, and recent declines in some populations have sparked concern. Our aim was to improve capabilities for fecal metabarcoding diet analysis of Dall’s sheep and other herbivores by contributing new sequence data for arctic and alpine plants. This expanded reference...
Authors
Kelly E. Williams, Damian M. Menning, Eric J. Wald, Sandra L. Talbot, Kumi L. Rattenbury, Laura R. Prugh

Responses of vertebrate wildlife to oil and natural gas development: Patterns and frontiers Responses of vertebrate wildlife to oil and natural gas development: Patterns and frontiers

Purpose of Review Anthropogenic activities can lead to the loss, fragmentation, and alteration of wildlife habitats. I reviewed the recent literature (2014–2019) focused on the responses of avian, mammalian, and herpetofaunal species to oil and natural gas development, a widespread and still-expanding land use worldwide. My primary goals were to identify any generalities in species’...
Authors
Anna D. Chalfoun

eDNA metabarcoding outperforms traditional fisheries sampling and reveals fine-scale heterogeneity in a temperate freshwater lake eDNA metabarcoding outperforms traditional fisheries sampling and reveals fine-scale heterogeneity in a temperate freshwater lake

Understanding biodiversity in aquatic systems is critical to ecological research and conservation efforts, but accurately measuring species richness using traditional methods can be challenging. Environmental DNA (eDNA) metabarcoding, which uses high-throughput sequencing and universal primers to amplify DNA from multiple species present in an environmental sample, has shown great...
Authors
Rebecca R. Gehri, Wesley Larson, Kristen Gruenthal, Nicholas Sard, Yue Shi

Daily patterns of river herring (Alosa spp.) spawning migrations: Environmental drivers and variation among coastal streams in Massachusetts Daily patterns of river herring (Alosa spp.) spawning migrations: Environmental drivers and variation among coastal streams in Massachusetts

The timing of life history events in many plants and animals depends on the seasonal fluctuations of specific environmental conditions. Climate change is altering environmental regimes and disrupting natural cycles and patterns across communities. Anadromous fishes that migrate between marine and freshwater habitats to spawn are particularly sensitive to shifting environmental conditions...
Authors
Henry Legett, Adrian Jordaan, Allison H. Roy, John Sheppard, Marcelo Somos-Valenzuela, Michelle Staudinger

Environmental DNA metabarcoding as a tool for biodiversity assessment and monitoring: Reconstructing established fish communities of north-temperate lakes and rivers Environmental DNA metabarcoding as a tool for biodiversity assessment and monitoring: Reconstructing established fish communities of north-temperate lakes and rivers

Aim To evaluate the ability of precipitation-based environmental DNA (eDNA) sample collection and mitochondrial 12S metabarcoding sequencing to reconstruct well-studied fish communities in lakes and rivers. Specific objectives were to 1) determine correlations between eDNA species detections and known community composition based on conventional field sampling, 2) compare efficiency of...
Authors
Peter T. Euclide, Yer Lor, Michael J. Spear, Tariq Tajjioui, M. Jake Vander Zanden, Wesley Larson, Jon Amberg

Survival and contaminants in imperiled and common riverine fishes assessed with an in situ bioassay approach Survival and contaminants in imperiled and common riverine fishes assessed with an in situ bioassay approach

An in situ bioassay approach was used to determine whether aquatic contaminant stressors in a large Atlantic river ecosystem affect the survival of 3 fish species: the largemouth bass (Micropterus salmoides, juveniles), the fathead minnow (Pimephales promelas, adults), and the robust redhorse (Moxostoma robustum, juveniles). Hatchery-propagated fish were placed into cages to assess site...
Authors
C. A. Grieshaber, W. G. Cope, Thomas J. Kwak, T. N. Penland, R. J. Heise, J. M. Law

Prehistoric earthquakes on the Banning strand of the San Andreas fault, North Palm Springs, California Prehistoric earthquakes on the Banning strand of the San Andreas fault, North Palm Springs, California

We studied a paleoseismic trench excavated in 2017 across the Banning strand of the San Andreas fault and herein provide the first detailed record of ground-breaking earthquakes on this important fault in Southern California. The trench exposed an ~40-m-wide fault zone cutting through alluvial sand, gravel, silt, and clay deposits. We evaluated the paleoseismic record using a new metric...
Authors
Bryan A. Castillo, Sally F. McGill, Katherine M. Scharer, Doug Yule, Devin McPhillips, James McNeil, Sourav Saha, Nathan D. Brown, Seulgi Moon

Measuring adrenal and reproductive hormones in hair from southern Beaufort Sea polar bears (Ursus maritimus) Measuring adrenal and reproductive hormones in hair from southern Beaufort Sea polar bears (Ursus maritimus)

Polar bears (Ursus maritimus) use sea ice to access marine mammal prey. In Alaska’s Southern Beaufort Sea, the declining availability of sea ice habitat in summer and fall has reduced opportunities for polar bears to routinely hunt on the ice for seals, their primary prey. This reduced access to prey may result in physiological stress with subsequent potential consequences to...
Authors
Marilize Van der Walt, Lorin Neuman-Lee, Patricia Terletzky, Todd C. Atwood, Eric Gese, Susannah French

Riparian forests buffer the negative effects of cropland on macroinvertebrate diversity in lowland Amazonian streams Riparian forests buffer the negative effects of cropland on macroinvertebrate diversity in lowland Amazonian streams

Riparian forests regulate stream ecosystems and biodiversity. Therefore, changes to riparian structure may threaten stream ecosystem function by triggering taxonomic and functional changes to aquatic communities. Because macroinvertebrate assemblages are sensitive to environmental changes, they can be effective indicators of stream integrity in disturbed landscapes. To assess the role of...
Authors
Nubia C.S. Marques, Kathi Jo Jankowski, Marcia N. Macedo, Leandro Juen, Ana Luiza-Andrade, Linda A. Deegan

Stopover ecology of red knots in southwestern James Bay during southbound migration Stopover ecology of red knots in southwestern James Bay during southbound migration

Many shorebirds rely on small numbers of staging sites during long annual migrations. Numerous shorebird species are declining and understanding the importance of these staging sites is important for successful conservation. We surveyed endangered rufa red knots (Calidris canutus rufa) staging in James Bay, Ontario, Canada, during southbound migration in 2017 and 2018. We used mark...
Authors
Amie MacDonald, Paul Smith, Christian Friis, James E. Lyons, Yves Aubry, Erica Nol

Differential susceptibility of Yukon River and Salish Sea stocks of Chinook salmon Oncorhynchus tshawytscha to ichthyophoniasis Differential susceptibility of Yukon River and Salish Sea stocks of Chinook salmon Oncorhynchus tshawytscha to ichthyophoniasis

Preliminary evidence suggests that Chinook salmon Oncorhynchus tshawytscha from the Yukon River may be more susceptible to Ichthyophonus sp. infections than Chinook from stocks further south. To investigate this hypothesis in a controlled environment, we experimentally challenged juvenile Chinook from the Yukon River and from the Salish Sea with Ichthyophonus sp. and evaluated mortality...
Authors
Diane G. Elliott, Carla M. Conway, Constance L. McKibben, Ashley MacKenzie, Lucas M. Hart, Maya Groner, Maureen K. Purcell, Jacob L. Gregg, Paul Hershberger

Runoff response to directional land cover change across reference basins in the conterminous United States Runoff response to directional land cover change across reference basins in the conterminous United States

Land cover change plays a critical role in influencing hydrological responses. Change in land cover has impacted runoff across basins with substantial human interference; however, the impacts in basins with minimal human interference have been studied less. In this study, we investigated the impacts of directional land cover changes (forest to/from combined grassland and shrubland) in...
Authors
Kul Bikram Khand, Gabriel B. Senay
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