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Per- and Polyfluoroalkyl Substances (PFAS) in U.S. Tapwater: Comparison of Public-Supply and Underserved Private-Well Exposures and Associated Health Implications Per- and Polyfluoroalkyl Substances (PFAS) in U.S. Tapwater: Comparison of Public-Supply and Underserved Private-Well Exposures and Associated Health Implications
This software involves files to fit the statistical models described in Smalling et al. Specifically, there are R scripts and associated stan model files (when appropriate) for comparing PFAS concentrations among public-supply and private-wells and as a function of geospatial predictor variables. There is also an R script for modeling the number of PFAS chemicals detected among water...
Golden Eagle Survival in the Great Plains, Nestlings, with Territory and Time Random Effects - Supplemental Code Golden Eagle Survival in the Great Plains, Nestlings, with Territory and Time Random Effects - Supplemental Code
R code for modeling survival of nestling and fledgling golden eagles. It is supplemental material for a manuscript submitted to Journal of Raptor Research.
Point locations and species and behavioral identifications of colonial nesting seabirds on Maine's coastal islands interpreted from 2019 plane-based imagery Point locations and species and behavioral identifications of colonial nesting seabirds on Maine's coastal islands interpreted from 2019 plane-based imagery
This dataset includes XY coordinates and species and behavioral observations of birds detected in aerial imagery captured over coastal islands along Maine's coast during 30 May. - 3 June 2019. The Partenavia P.68 Observer plane flew over 268 islands within the Gulf of Maine (GOM). The plane flew at an altitude of 310 m above ground level and was equipped with a PhaseOne iXU-RS1000 (100...
Mid-Atlantic Coast, Lasiurus borealis Movement and Migration Mid-Atlantic Coast, Lasiurus borealis Movement and Migration
The data in the CSV file named RSF is a detailed dataset used to run the models testing relationships between movement behavior and atmospheric conditions. This dataset includes: detection date and rounded hour, status (0 or 1) showing if over-water movement occurring within nine hours was detected, number of hours since sunset, site ID of area weather station, Motus tag ID, wind speed
Workflow to acquire and process large spatial data and build complex models Workflow to acquire and process large spatial data and build complex models
This software involves R scripts to download and process large-scale spatial data defined by an extent input by the user. The code then resamples data to the desired resolution, downloads metadata from a public website on West Nile virus prevalence in mosquito pools, then extracts spatial layer data as covariates for each record. Also, this software involves R script to fit models of...
Distribution Models Predicting Groundwater Influenced Ecosystems in the Northeastern United States Distribution Models Predicting Groundwater Influenced Ecosystems in the Northeastern United States
Globally, groundwater dependent ecosystems (GDEs) are increasingly vulnerable to groundwater extraction and land use practices. Groundwater supports these ecosystems by providing inflow, which can maintain water levels, water temperature, and chemistry necessary to sustain the biodiversity that they support. Many aquatic systems receive groundwater as a portion of base flow, and in some...
Population Structure and Genetic Diversity of Eastern North American Moose Population Structure and Genetic Diversity of Eastern North American Moose
Hair samples were collected in discrete areas during radio-collar studies in Vermont under the auspices of University of Vermont IACUC protocol #17-035 (n=106), New Hampshire (n=34), and Maine (n=57). Hair and tissue samples were opportunistically collected from animals that were harvested, died in vehicle collisions, or translocated throughout Vermont (n = 105), Quebec (n = 198)...
Wyoming crayfish assemblages 1969 - 2020 Wyoming crayfish assemblages 1969 - 2020
Crayfish have experienced extensive community reorganization as a result of global change, with some species becoming globally invasive while others have become rare or extinct. We combined historical and contemporary sampling data to determine temporal trends of crayfish assemblages of Wyoming, United States (1969–2020). The dataset includes previous statewide surveys and more narrow...
Inferring pathogen presence when sample misclassification and partial observation occur Inferring pathogen presence when sample misclassification and partial observation occur
This software contains four separate R scripts and one Matlab script that comprise an analysis to estimate the posterior probability of pathogen presence when sample misclassification and partial observations occur. We develop a Bayesian hierarchal framework that accommodates false negative, false positive, and uncertain detections and apply this framework to a case study of the fungal...
White-tailed deer and sharp-tailed grouse data used in constrained generalized additive models to enhance survival analyses and incorporate ecological theory White-tailed deer and sharp-tailed grouse data used in constrained generalized additive models to enhance survival analyses and incorporate ecological theory
Grouse: These data on sharp-tailed grouse survival times are provided for individuals wanting to run an age-period survival analysis. Entry and exit times are expressed in integer days from the start of the study. Entry age and exit age expressed in integer days are also included. Data are structured to implement survival analysis. White-tailed Deer: These data on white-tailed deer...
Code for Assimilating ecological theory with empiricism: Using constrained generalized additive models to enhance survival analyses Code for Assimilating ecological theory with empiricism: Using constrained generalized additive models to enhance survival analyses
Code will be submitted to the Dryad repository upon acceptance of the manuscript. These R code are used for simulations and case studies. Simulations include data for generating age-period survival data. We have provided code for each of the 10 models that were fit using NIMBLE, where each model has four R scripts including: 1) A script to execute and run all the additional R scripts for...
Code for Rapid prototyping for quantifying belief weights of competing hypotheses about emergent diseases Code for Rapid prototyping for quantifying belief weights of competing hypotheses about emergent diseases
Code submitted to Journal of Environmental Management and ScienceBase for running Bayesian hierarchical models on a dataset that was collected using expert elicitation of a panel of 15 experts on the etiology of stony coral tissue loss disease and its impacts on coral reefs. The code is for a rapid prototyping method for quantifying belief weights for competing hypotheses about the...