Publications

Environmental DNA (eDNA) analysis refers to the collection of bulk environmental samples such as water, sediment, or air, and studying the genetic remnants that organisms have shed into their environment to gain information about species presence.

The Permian Basin, in west Texas and southeastern New Mexico is one of the largest conventional oil and gas reservoirs in the United States and is becoming one of the world’s largest continuous oil and gas (COG) reservoirs. Advances in technology have enabled oil and gas to be extracted from reservoirs that historically were developed using conventional, or vertical, well drilling...

Black Carp (Mylopharyngodon piceus) has invaded the Mississippi River and is a potential threat to native mollusks. During prior diet research, we discovered that the fluke Aspidogaster conchicola, a mollusk parasite, occurs regularly in the gastrointestinal tract of Black Carp. The fluke remains in fish intestines for extended periods after the fish has consumed its host. Flukes were...

The U.S. Geological Survey, in cooperation with the Alabama Department of Transportation, evaluated the role of culvert construction in altering streams and habitats of benthic macroinvertebrate communities at selected study sites in the northern East Gulf Coastal Plain of Alabama during 2011–19. Analysis included examinations of changes in stream channel geometry, suspended sediment...

Sea turtle hatchlings face many natural and anthropogenic threats during their short journey to the water after emerging from nests. Reducing hatchling mortality is critical to population recovery of imperiled sea turtle species; however, protecting hatchlings is particularly challenging on beaches degraded by human development and disturbances, including artificial lighting. Managers...

Timber harvesting can influence headwater streams by altering stream productivity, with cascading effects on the food web and predators within, including stream salamanders. Although studies have examined shifts in salamander occupancy or abundance following timber harvest, few examine sublethal effects such as changes in growth and demography. To examine the effect of upland harvesting...

Elevated concentrations of per- and polyfluoroalkyl substances (PFAS) in drinking-water supplies are a major concern for human health. It is therefore essential to understand factors that affect PFAS concentrations in surface water and groundwater and the transformation of perfluoroalkyl acid (PFAA) precursors that degrade into terminal compounds. Surface-water/groundwater exchange can...

The whale shark (Rhincodon typus) is an endangered and highly migratory species, of which solitary individuals or aggregations are observed in oceans worldwide and for which conservation efforts are hindered by a lack of comprehensive data on genetic population connectivity. Tissue samples were collected from wandering whale sharks in Pacific Panama to determine genetic diversity...

A concentrated animal feeding operation (CAFO) established in Newton County, Arkansas, near Big Creek, a tributary of the Buffalo National River, raised concern about potential degradation of water quality in the karst watershed. In this study, isotopic tools were combined with standard geochemical approaches to characterize nutrient sources and dynamics in the Big Creek watershed. An...

We examined a study plot sampled in the Conecuh National Forest of southern Alabama in 1999 and again in 2016 after stand thinning and persistent prescribed fire were used to improve habitat quality. These management activities were designed, in part, to enhance habitat quality for the gopher tortoise (Gopherus polyphemus), a species considered for protection under the Endangered Species...

For several decades, white plagues (WPDs: WPD-I, II and III) and more recently, stony coral tissue loss disease (SCTLD) have significantly impacted Caribbean corals. These diseases are often difficult to separate in the field as they produce similar gross signs. Here we aimed to compare what we know about WPD and SCTLD in terms of: (1) pathology, (2) etiology, and (3) epizootiology. We...

The idea for this book, including its organization and contents, has its origin in the latest environmental and climate policy requirements in the United States, as well as science advances. In 2007, the U.S. Congress passed the Energy Independence and Security Act (EISA), from which Section 712 required U.S. Federal agencies to provide a better understanding of carbon and greenhouse gas...