USGS Research Biologist Nathan Johnson’s son Bryce harvests his first white-tailed deer on private property near High Springs, Florida.
Nathan A Johnson, Ph.D.
Nathan Johnson is a Research Biologist at the USGS Wetland and Aquatic Research Center.
EDUCATION
Ph.D., Fisheries and Aquatic Sciences, University of Florida
M.S., Fisheries and Wildlife Sciences, Virginia Tech University
B.S., Fisheries Science, Virginia Tech University
RESEARCH
Nathan Johnson's research focuses on investigating species boundaries, distributions, and conservation priorities of freshwater mussels in the Southeast. Raised in eastern Virginia, Nate received both his bachelor’s and master’s degrees from the Fisheries and Wildlife Department at Virginia Tech and earned his Ph.D. at the University of Florida. His undergraduate research focused on conservation genetics and propagation of endangered freshwater mussels and fishes. For his master’s, Nate looked at the genetics of disease resistance in rainbow trout at the USDA-National Center for Cool and Coldwater Aquaculture in Leetown, WV. By developing new molecular markers to trace pedigrees and populations structure, he identified associations between major histocompatibility genes and disease resistance. His dissertation research resolved long-standing uncertainties about the systematics of freshwater mussels that will aid in the development of more effective conservation management strategies. This includes documenting mussel diversity in rivers of the North American Coastal Plain using DNA barcoding and evaluating the processes responsible for their current geographic distribution (phylogeography). He is active in a variety of professional societies including the American Fisheries Society and the Freshwater Mollusk Conservation Society and currently partnered with the Florida Museum, the Smithsonian Institute, Florida Fish and Wildlife Conservation Commission, and the US Fish and Wildlife Service. Outside of professional interests, he enjoys traveling, mountain biking, fishing, and surfing.
Science and Products
USGS National Vision for Native Freshwater Mussel Research: Completing a Bureau-wide Ecosystems Mission Area-led Science Strategy
Development and Implementation of Environmental DNA (eDNA) Tools to Aid Listing and Recovery Efforts for Imperiled and Common Freshwater Mussels
Using Molecular Tools to Recalibrate Freshwater Mussel Taxonomy with a Focus on Imperiled Species
Life History Characterization and Host Fish Identification for Federally Listed and Imperiled Freshwater Mussel Species in the Suwannee River Basin in Georgia and Florida
Evaluation of Stream Reaches for Mussel Reintroduction in the Upper Coosa Watershed, NW Georgia
Molecular resources combined with morphology and geography to provide insights into the evolutionary history of a wide-ranging freshwater mussel species complex (Unionida: Quadrula)
Environmental DNA (eDNA) Metabarcoding assessment of dead-end hollow fiber ultrafiltration (D-HFUF) and polyethylstyrene (PES) filters filtration methods on detection of freshwater mussel eDNA from Flint River and Spring Creek, Georgia and Big Piney River
Molecular data used to test species boundaries, characterize phylogeographic patterns of genetic diversity, and guide the Endangered Species Act listing decision for a North American freshwater mussel species complex
Molecular and distributional data used to investigate misidentifications, population genetic diversity, and spatiotemporal trends in distribution for Pleurobema riddellii to help guide ESA listing decisions
Molecular data and results needed to better understand codiversification of freshwater mussels (Unionidae: Quadrulini) and their parasitic larval hosts
Molecular, morphological, and distributional data supporting the recognition of an undescribed freshwater mussel endemic to the Edwards Plateau in the Colorado River basin
Molecular resources for investigating relationships among freshwater mussels (Bivalvia: Unionoida) with a focus on the genus Alasmidonta
Red Lionfish DNA data collected from Florida, USA and around the invasive distribution from 2007 to 2016
Novel genetic resources for Clubshell freshwater mussels (Pleurobema clava, P. oviforme) for enhanced conservation
Molecular data to investigate phylogeographic patterns, species boundaries, and demographic history of a North American freshwater mussel species complex (Bivalvia: Unionidae)
Novel genetic resources to facilitate future molecular studies in freshwater mussels (Bivalvia: Unionidae)
Molecular and morphological data to resolve species boundaries in the critically imperiled freshwater mussel species, Fusconaia mitchelli
USGS Research Biologist Nathan Johnson’s son Bryce harvests his first white-tailed deer on private property near High Springs, Florida.
Secondary contact erodes Pleistocene diversification in a wide-ranging freshwater mussel (Quadrula)
Integrative phylogenetic, phylogeographic and morphological characterisation of the Unio crassus species complex reveals cryptic diversity with important conservation implications
Glacial vicariance and secondary contact shape demographic histories in a freshwater mussel species complex
Molecular data validate historical and contemporary distributions of Pleurobema riddellii (Bivalvia: Unionidae) and help guide conservation and recovery efforts
Dead-end hollow fiber ultrafiltration capture of environmental DNA for freshwater mussel (Unionidae) species detection with metabarcoding
U.S. Geological Survey science vision for native freshwater mussel research in the United States
Coevolution with host fishes shapes parasitic life histories in a group of freshwater mussels (Unionidae: Quadrulini)
Environmental, morphological, and molecular data reveal a new species of freshwater mussel, Strophitus howellsi, endemic to the Edwards Plateau in Texas
A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida)
Hidden in the hills: Phylogeny of the freshwater mussel genus Alasmidonta (Bivalvia: Unionidae) and description of a new species
Biogeography of freshwater mussels (Bivalvia: Unionida) in Texas and implications on conservation biology
Using a multi-model ensemble approach to determine biodiversity hotspots with limited occurrence data in understudied areas: An example using freshwater mussels in México
Non-USGS Publications**
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
Science and Products
USGS National Vision for Native Freshwater Mussel Research: Completing a Bureau-wide Ecosystems Mission Area-led Science Strategy
Development and Implementation of Environmental DNA (eDNA) Tools to Aid Listing and Recovery Efforts for Imperiled and Common Freshwater Mussels
Using Molecular Tools to Recalibrate Freshwater Mussel Taxonomy with a Focus on Imperiled Species
Life History Characterization and Host Fish Identification for Federally Listed and Imperiled Freshwater Mussel Species in the Suwannee River Basin in Georgia and Florida
Evaluation of Stream Reaches for Mussel Reintroduction in the Upper Coosa Watershed, NW Georgia
Molecular resources combined with morphology and geography to provide insights into the evolutionary history of a wide-ranging freshwater mussel species complex (Unionida: Quadrula)
Environmental DNA (eDNA) Metabarcoding assessment of dead-end hollow fiber ultrafiltration (D-HFUF) and polyethylstyrene (PES) filters filtration methods on detection of freshwater mussel eDNA from Flint River and Spring Creek, Georgia and Big Piney River
Molecular data used to test species boundaries, characterize phylogeographic patterns of genetic diversity, and guide the Endangered Species Act listing decision for a North American freshwater mussel species complex
Molecular and distributional data used to investigate misidentifications, population genetic diversity, and spatiotemporal trends in distribution for Pleurobema riddellii to help guide ESA listing decisions
Molecular data and results needed to better understand codiversification of freshwater mussels (Unionidae: Quadrulini) and their parasitic larval hosts
Molecular, morphological, and distributional data supporting the recognition of an undescribed freshwater mussel endemic to the Edwards Plateau in the Colorado River basin
Molecular resources for investigating relationships among freshwater mussels (Bivalvia: Unionoida) with a focus on the genus Alasmidonta
Red Lionfish DNA data collected from Florida, USA and around the invasive distribution from 2007 to 2016
Novel genetic resources for Clubshell freshwater mussels (Pleurobema clava, P. oviforme) for enhanced conservation
Molecular data to investigate phylogeographic patterns, species boundaries, and demographic history of a North American freshwater mussel species complex (Bivalvia: Unionidae)
Novel genetic resources to facilitate future molecular studies in freshwater mussels (Bivalvia: Unionidae)
Molecular and morphological data to resolve species boundaries in the critically imperiled freshwater mussel species, Fusconaia mitchelli
USGS Research Biologist Nathan Johnson’s son Bryce harvests his first white-tailed deer on private property near High Springs, Florida.
USGS Research Biologist Nathan Johnson’s son Bryce harvests his first white-tailed deer on private property near High Springs, Florida.
Secondary contact erodes Pleistocene diversification in a wide-ranging freshwater mussel (Quadrula)
Integrative phylogenetic, phylogeographic and morphological characterisation of the Unio crassus species complex reveals cryptic diversity with important conservation implications
Glacial vicariance and secondary contact shape demographic histories in a freshwater mussel species complex
Molecular data validate historical and contemporary distributions of Pleurobema riddellii (Bivalvia: Unionidae) and help guide conservation and recovery efforts
Dead-end hollow fiber ultrafiltration capture of environmental DNA for freshwater mussel (Unionidae) species detection with metabarcoding
U.S. Geological Survey science vision for native freshwater mussel research in the United States
Coevolution with host fishes shapes parasitic life histories in a group of freshwater mussels (Unionidae: Quadrulini)
Environmental, morphological, and molecular data reveal a new species of freshwater mussel, Strophitus howellsi, endemic to the Edwards Plateau in Texas
A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida)
Hidden in the hills: Phylogeny of the freshwater mussel genus Alasmidonta (Bivalvia: Unionidae) and description of a new species
Biogeography of freshwater mussels (Bivalvia: Unionida) in Texas and implications on conservation biology
Using a multi-model ensemble approach to determine biodiversity hotspots with limited occurrence data in understudied areas: An example using freshwater mussels in México
Non-USGS Publications**
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.