Tyler Wagner, PhD (Former Employee)
Science and Products
Filter Total Items: 15
Predicting climate change impacts on poikilotherms Predicting climate change impacts on poikilotherms
This software involves files to fit the physiologically-guided abundance (PGA) model ('fish_predictions_pga.R'), a naive model ('fish_predictions_naive.R'), and a PGA model using simulated data ('PGA_sim.R'). Each R file calls as associated .stan file that contains the model code that is executed by stan when running the R code ('fish_prediction.stan', 'fish_prediction_naive.stan', and...
Predicting climate change impacts on poikilotherms using physiologically guided species abundance models Predicting climate change impacts on poikilotherms using physiologically guided species abundance models
R code and .stan files for fitting physiologically guided abundance models for predicting climate change impacts on poikilotherms.
Population genetic data for flathead catfish from the Susquehanna and Delaware River basins in Pennsylvania and Maryland, USA Population genetic data for flathead catfish from the Susquehanna and Delaware River basins in Pennsylvania and Maryland, USA
This dataset includes microsatellite genotypes for 137 flathead catfish from the Susquehanna River and Delaware River basins in Pennslyvania and Maryland, USA. Each individual was genotyped at 13 loci. Additional information about sex, capture date, and size are also provided for most individuals.
Filter Total Items: 124
The effects of wastewater reuse on smallmouth bass (Micropterus dolomieu) relative abundance in the Shenandoah River Watershed, USA The effects of wastewater reuse on smallmouth bass (Micropterus dolomieu) relative abundance in the Shenandoah River Watershed, USA
Municipal and industrial wastewater effluent is an important source of water for lotic systems, especially during periods of low flow. The accumulated wastewater effluent flows—expressed as a percentage of total streamflow (ACCWW%)—contain chemical mixtures that pose a risk to aquatic life; fish may be particularly vulnerable when chronically exposed. Although there has been considerable...
Authors
Tyler Wagner, Paul McLaughlin, Kaycee E. Faunce, Samuel H. Austin, Kelly L. Smalling
Movement beyond the mean: decoupling sources of individual variation in brook trout movement across seasons Movement beyond the mean: decoupling sources of individual variation in brook trout movement across seasons
Movement is an important eco-evolutionary process that can shape population and ecosystem structure and function. Accordingly, a firm understanding of species movement ecology is often foundational to effective management and conservation. However, despite movement being an inherently individual-level behavior, there remains a tendency to describe dispersal and migration patterns using...
Authors
Shannon L. White, Jason Keagy, Sarah Batchelor, Julia Langlois, Natalie Thomas, Tyler Wagner
A continuous classification of the 476,697 lakes of the conterminous US based on geographic archetypes A continuous classification of the 476,697 lakes of the conterminous US based on geographic archetypes
A variety of classification approaches are used to facilitate understanding, prediction, monitoring, and the management of lakes. However, broad-scale applicability of current approaches is limited by either the need for in situ lake data, incompatibilities among approaches, or a lack of empirical testing of approaches based on ex situ data. We developed a new geographic classification...
Authors
Jean-Francois Lapierre, Katherine E. Webster, Ephraim Hanks, Tyler Wagner, Patricia A. Soranno, Ian M. McCullough, Kaitlin L. Reinl, Marcella Domka, Noah R. Lotting
Accounting for spatiotemporal sampling variation in joint species distribution models Accounting for spatiotemporal sampling variation in joint species distribution models
Estimating relative abundance is critical for informing conservation and management efforts and for making inferences about the effects of environmental change on populations. Freshwater fisheries span large geographic regions, occupy diverse habitats and consist of varying species assemblages. Monitoring schemes used to sample these diverse populations often result in populations being...
Authors
Joshua S. North, Erin M. Schliep, Gretchen J.A. Hansen, Holly Kundel, Christopher A. Custer, Paul McLaughlin, Tyler Wagner
Fire characteristics and hydrologic connectivity influence short-term responses of north temperate lakes to wildfire Fire characteristics and hydrologic connectivity influence short-term responses of north temperate lakes to wildfire
Despite increasing wildfires, few studies have investigated seasonal water quality responses to wildfire characteristics (e.g., burn severity) across a large number of lakes. We monitored 30 total lakes (15 burned, 15 control) monthly following the Greenwood Fire in Minnesota, USA, a lake-rich region with historically prevalent wildfire. We found increases in median concentrations of...
Authors
Ian M. McCullough, Jennifer A. Brentrup, Tyler Wagner, Jean-Francois Lapierre, Jerald Henneck, Andrea M. Paul, Mathilde Belair, Max. A. Moritz, Christopher T. Filstrup
Per- and polyfluoroalkyl substances (PFAS) in United States tapwater: Comparison of underserved private-well and public-supply exposures and associated health implications Per- and polyfluoroalkyl substances (PFAS) in United States tapwater: Comparison of underserved private-well and public-supply exposures and associated health implications
Drinking-water quality is a rising concern in the United States (US), emphasizing the need to broadly assess exposures and potential health effects at the point-of-use. Drinking-water exposures to per- and poly-fluoroalkyl substances (PFAS) are a national concern, however, there is limited information on PFAS in residential tapwater at the point-of-use, especially from private-wells. We...
Authors
Kelly L. Smalling, Kristin M. Romanok, Paul M. Bradley, Matthew C. Morriss, James L. Gray, Leslie K. Kanagy, Stephanie E. Gordon, Brianna Williams, Sara E. Breitmeyer, Daniel K. Jones, Laura A. DeCicco, Collin A. Eagles-Smith, Tyler Wagner
By
Ecosystems Mission Area, Water Resources Mission Area, Cooperative Research Units, Forest and Rangeland Ecosystem Science Center, New Jersey Water Science Center, South Atlantic Water Science Center (SAWSC), Upper Midwest Environmental Sciences Center, Upper Midwest Water Science Center, Utah Water Science Center
Assembling the right pieces: Developing an interdisciplinary team to study disease, decline, and recovery of a world-class Smallmouth Bass fishery Assembling the right pieces: Developing an interdisciplinary team to study disease, decline, and recovery of a world-class Smallmouth Bass fishery
Managing and understanding fisheries dynamics are becoming more complex as new and seemingly more complicated environmental factors are identified. Often management requires resources beyond that of any one entity and calls for collaboration among partners with differing priorities and backgrounds to account for the complexity of factors influencing fisheries. We present a collaborative...
Authors
Megan K. Schall, Geoffrey Smith, Vicki S. Blazer, Heather L. Walsh, Timothy Wertz, Dustin R. Shull, Tyler Wagner
Predicting climate change impacts on poikilotherms using physiologically guided species abundance models Predicting climate change impacts on poikilotherms using physiologically guided species abundance models
Poikilothermic animals comprise most species on Earth and are especially sensitive to changes in environmental temperatures. Species conservation in a changing climate relies upon predictions of species responses to future conditions, yet predicting species responses to climate change when temperatures exceed the bounds of observed data is fraught with challenges. We present a...
Authors
Tyler Wagner, Erin M. Schliep, Joshua S. North, Holly Kundel, Christopher A. Custer, Jenna K. Ruzich, Gretchen J.A. Hansen
Landscape transcriptomics as a tool for addressing global change effects across diverse species Landscape transcriptomics as a tool for addressing global change effects across diverse species
Landscape transcriptomics is an emerging field studying how genome-wide expression patterns reflect dynamic landscape-scale environmental drivers, including habitat, weather, climate, and contaminants, and the subsequent effects on organismal function. This field is benefitting from advancing and increasingly accessible molecular technologies, which in turn are allowing the necessary
Authors
Jason Keagy, Chloe P. Drummond, Kadeem J. Gilbert, Christina Grozinger, Jill Hamilton, Heather M. Hines, Jesse Lasky, Cheryl A. Logan, Ruairidh Sawers, Tyler Wagner
Approaching the upper boundary of driver-response relationships: Identifying factors using a novel framework integrating quantile regression with interpretable machine learning Approaching the upper boundary of driver-response relationships: Identifying factors using a novel framework integrating quantile regression with interpretable machine learning
The identification of factors that may be forcing ecological observations to approach the upper boundary provides insight into potential mechanisms affecting driver-response relationships, and can help inform ecosystem management, but has rarely been explored. In this study, we propose a novel framework integrating quantile regression with interpretable machine learning. In the first...
Authors
Zhongyao Liang, Yaoyang Xu, Gang Zhao, Wentao Lu, Zhenghui Fu, Shuhang Wang, Tyler Wagner
Freshwater corridors in the conterminous US: A coarse-filter approach based on lake-stream networks Freshwater corridors in the conterminous US: A coarse-filter approach based on lake-stream networks
Maintaining regional-scale freshwater connectivity is challenging owing to the dendritic, easily fragmented structure of freshwater networks, but is essential for promoting ecological resilience under climate change. Although the importance of stream network connectivity has been recognized, lake-stream network connectivity has largely been ignored. Furthermore, protected areas are...
Authors
Ian M. McCullough, Patrick J. Hanly, Katelyn B.S. King, Tyler Wagner
Estrogenic activity response to best management practice implementation in agricultural watersheds in the Chesapeake Bay watershed Estrogenic activity response to best management practice implementation in agricultural watersheds in the Chesapeake Bay watershed
Best management practices (BMPs) have been predominantly used throughout the Chesapeake Bay watershed (CBW) to reduce nutrients and sediments entering streams, rivers, and the bay. These practices have been successful in reducing loads entering the estuary and have shown the potential to reduce other contaminants (pesticides, hormonally active compounds, pathogens) in localized studies...
Authors
Stephanie E. Gordon, Tyler Wagner, Kelly L. Smalling, Olivia H. Devereux
Filter Total Items: 23
Decadal changes in stream fish communities and contemporary ecological drivers of species occupancy in two Appalachian U.S. National Parks Decadal changes in stream fish communities and contemporary ecological drivers of species occupancy in two Appalachian U.S. National Parks
Although conserving fish biodiversity in lotic systems is challenging, protected areas can provide refuge from certain environmental stressors. In the Appalachian region, USA, the National Park Service manages Delaware Water Gap National Recreation Area (DEWA) and New River Gorge National Park & Preserve (NERI) which both contain abundant and diverse freshwater resources. To assess the
R and Python code for analysis of productivity in thousands of US lakes in response to climate over the last 30 years R and Python code for analysis of productivity in thousands of US lakes in response to climate over the last 30 years
Climate change is expected to increase lake productivity and algal blooms and cause regime shifts, particularly in human-impacted ecosystems. However, evidence is lacking for causal relationships between climate and lake productivity or for the nonlinear dynamics needed to demonstrate regime shifts. We modeled causal effects of climate on lake chlorophyll over 34 years in 24,452 US lakes...
Evaluating the effectiveness of joint species distribution modeling for riverine fish communities Evaluating the effectiveness of joint species distribution modeling for riverine fish communities
Species Distribution Models (JSDMs) allow for accounting for both environmental predictors and species dependencies within a single statistical modeling frameworks. However, it is unclear under what conditions incorporating residual species dependencies (conditional predictions) might outperform predictions made using only environmental information (marginal predictions). Here, we...
Feeding Habits and Ecological Implications of the Invasive Flathead Catfish, Pylodictis olivaris, in the Susquehanna River Basin, Pennsylvania Feeding Habits and Ecological Implications of the Invasive Flathead Catfish, Pylodictis olivaris, in the Susquehanna River Basin, Pennsylvania
Flathead Catfish _Pylodictis olivaris_ are a prominent aquatic invasive species within the United States and a recent invader in the Susquehanna River Basin, Pennsylvania. Flathead Catfish are piscivores known to consume native and recreationally important fish species. In the northeastern United States, it is unknown how this invader is impacting food webs and which species may be at...
Predicting fish responses to climate change using a joint species, spatially dependent physiologically guided abundance model Predicting fish responses to climate change using a joint species, spatially dependent physiologically guided abundance model
Predicting the effects of warming temperatures on the abundance and distribution of organisms under future climate scenarios often requires extrapolating species-environment correlations to thermal conditions not currently experienced by a species or to temperatures that exceed the range of observed data. For poikilotherms, incorporating species’ thermal physiology to inform...
The effects of wastewater reuse on smallmouth bass (Micropterus dolomieu) relative abundance in the Shenandoah River Watershed, USA The effects of wastewater reuse on smallmouth bass (Micropterus dolomieu) relative abundance in the Shenandoah River Watershed, USA
R code to evaluate the effects of wastewater reuse on smallmouth bass (Micropterus dolomieu) relative abundance in the Shenandoah River Watershed, USA
Modeling widespread declines in walleye recruitment following zebra mussel invasion in Minnesota lakes Modeling widespread declines in walleye recruitment following zebra mussel invasion in Minnesota lakes
Invasive zebra mussels (Dreissena polymorpha) alter lake ecosystems and can negatively affect first-year growth of walleye (Sander vitreus), potentially lowering walleye recruitment success. We quantified walleye recruitment responses to zebra mussel invasion in Minnesota lakes using data from 1,438 electrofishing surveys across 348 lakes collected between 1993 and 2019 to measure...
Accounting for spatio-temporal variation in catchability in joint species distribution models Accounting for spatio-temporal variation in catchability in joint species distribution models
1: Estimating relative abundance is critical for informing conservation and management efforts and for making inferences about the effects of environmental change on populations. Freshwater fisheries span large geographic regions, occupy diverse habitats, and consist of varying species assemblages. Monitoring schemes used to sample these diverse populations often result in populations...
Per- and Polyfluoroalkyl Substances (PFAS) in U.S. Tapwater: Comparison of Public-Supply and Underserved Private-Well Exposures and Associated Health Implications Per- and Polyfluoroalkyl Substances (PFAS) in U.S. Tapwater: Comparison of Public-Supply and Underserved Private-Well Exposures and Associated Health Implications
This software involves files to fit the statistical models described in Smalling et al. Specifically, there are R scripts and associated stan model files (when appropriate) for comparing PFAS concentrations among public-supply and private-wells and as a function of geospatial predictor variables. There is also an R script for modeling the number of PFAS chemicals detected among water...
Predicting climate change impacts on poikilotherms Predicting climate change impacts on poikilotherms
This software involves files to fit the physiologically-guided abundance (PGA) model ('fish_predictions_pga.R'), a naive model ('fish_predictions_naive.R'), and a PGA model using simulated data ('PGA_sim.R'). Each R file calls as associated .stan file that contains the model code that is executed by stan when running the R code ('fish_prediction.stan', 'fish_prediction_naive.stan', and...
Predicting climate change impacts on poikilotherms using physiologically guided species abundance models Predicting climate change impacts on poikilotherms using physiologically guided species abundance models
R code and .stan files for fitting physiologically guided abundance models for predicting climate change impacts on poikilotherms.
Science and Products
Filter Total Items: 15
Predicting climate change impacts on poikilotherms Predicting climate change impacts on poikilotherms
This software involves files to fit the physiologically-guided abundance (PGA) model ('fish_predictions_pga.R'), a naive model ('fish_predictions_naive.R'), and a PGA model using simulated data ('PGA_sim.R'). Each R file calls as associated .stan file that contains the model code that is executed by stan when running the R code ('fish_prediction.stan', 'fish_prediction_naive.stan', and...
Predicting climate change impacts on poikilotherms using physiologically guided species abundance models Predicting climate change impacts on poikilotherms using physiologically guided species abundance models
R code and .stan files for fitting physiologically guided abundance models for predicting climate change impacts on poikilotherms.
Population genetic data for flathead catfish from the Susquehanna and Delaware River basins in Pennsylvania and Maryland, USA Population genetic data for flathead catfish from the Susquehanna and Delaware River basins in Pennsylvania and Maryland, USA
This dataset includes microsatellite genotypes for 137 flathead catfish from the Susquehanna River and Delaware River basins in Pennslyvania and Maryland, USA. Each individual was genotyped at 13 loci. Additional information about sex, capture date, and size are also provided for most individuals.
Filter Total Items: 124
The effects of wastewater reuse on smallmouth bass (Micropterus dolomieu) relative abundance in the Shenandoah River Watershed, USA The effects of wastewater reuse on smallmouth bass (Micropterus dolomieu) relative abundance in the Shenandoah River Watershed, USA
Municipal and industrial wastewater effluent is an important source of water for lotic systems, especially during periods of low flow. The accumulated wastewater effluent flows—expressed as a percentage of total streamflow (ACCWW%)—contain chemical mixtures that pose a risk to aquatic life; fish may be particularly vulnerable when chronically exposed. Although there has been considerable...
Authors
Tyler Wagner, Paul McLaughlin, Kaycee E. Faunce, Samuel H. Austin, Kelly L. Smalling
Movement beyond the mean: decoupling sources of individual variation in brook trout movement across seasons Movement beyond the mean: decoupling sources of individual variation in brook trout movement across seasons
Movement is an important eco-evolutionary process that can shape population and ecosystem structure and function. Accordingly, a firm understanding of species movement ecology is often foundational to effective management and conservation. However, despite movement being an inherently individual-level behavior, there remains a tendency to describe dispersal and migration patterns using...
Authors
Shannon L. White, Jason Keagy, Sarah Batchelor, Julia Langlois, Natalie Thomas, Tyler Wagner
A continuous classification of the 476,697 lakes of the conterminous US based on geographic archetypes A continuous classification of the 476,697 lakes of the conterminous US based on geographic archetypes
A variety of classification approaches are used to facilitate understanding, prediction, monitoring, and the management of lakes. However, broad-scale applicability of current approaches is limited by either the need for in situ lake data, incompatibilities among approaches, or a lack of empirical testing of approaches based on ex situ data. We developed a new geographic classification...
Authors
Jean-Francois Lapierre, Katherine E. Webster, Ephraim Hanks, Tyler Wagner, Patricia A. Soranno, Ian M. McCullough, Kaitlin L. Reinl, Marcella Domka, Noah R. Lotting
Accounting for spatiotemporal sampling variation in joint species distribution models Accounting for spatiotemporal sampling variation in joint species distribution models
Estimating relative abundance is critical for informing conservation and management efforts and for making inferences about the effects of environmental change on populations. Freshwater fisheries span large geographic regions, occupy diverse habitats and consist of varying species assemblages. Monitoring schemes used to sample these diverse populations often result in populations being...
Authors
Joshua S. North, Erin M. Schliep, Gretchen J.A. Hansen, Holly Kundel, Christopher A. Custer, Paul McLaughlin, Tyler Wagner
Fire characteristics and hydrologic connectivity influence short-term responses of north temperate lakes to wildfire Fire characteristics and hydrologic connectivity influence short-term responses of north temperate lakes to wildfire
Despite increasing wildfires, few studies have investigated seasonal water quality responses to wildfire characteristics (e.g., burn severity) across a large number of lakes. We monitored 30 total lakes (15 burned, 15 control) monthly following the Greenwood Fire in Minnesota, USA, a lake-rich region with historically prevalent wildfire. We found increases in median concentrations of...
Authors
Ian M. McCullough, Jennifer A. Brentrup, Tyler Wagner, Jean-Francois Lapierre, Jerald Henneck, Andrea M. Paul, Mathilde Belair, Max. A. Moritz, Christopher T. Filstrup
Per- and polyfluoroalkyl substances (PFAS) in United States tapwater: Comparison of underserved private-well and public-supply exposures and associated health implications Per- and polyfluoroalkyl substances (PFAS) in United States tapwater: Comparison of underserved private-well and public-supply exposures and associated health implications
Drinking-water quality is a rising concern in the United States (US), emphasizing the need to broadly assess exposures and potential health effects at the point-of-use. Drinking-water exposures to per- and poly-fluoroalkyl substances (PFAS) are a national concern, however, there is limited information on PFAS in residential tapwater at the point-of-use, especially from private-wells. We...
Authors
Kelly L. Smalling, Kristin M. Romanok, Paul M. Bradley, Matthew C. Morriss, James L. Gray, Leslie K. Kanagy, Stephanie E. Gordon, Brianna Williams, Sara E. Breitmeyer, Daniel K. Jones, Laura A. DeCicco, Collin A. Eagles-Smith, Tyler Wagner
By
Ecosystems Mission Area, Water Resources Mission Area, Cooperative Research Units, Forest and Rangeland Ecosystem Science Center, New Jersey Water Science Center, South Atlantic Water Science Center (SAWSC), Upper Midwest Environmental Sciences Center, Upper Midwest Water Science Center, Utah Water Science Center
Assembling the right pieces: Developing an interdisciplinary team to study disease, decline, and recovery of a world-class Smallmouth Bass fishery Assembling the right pieces: Developing an interdisciplinary team to study disease, decline, and recovery of a world-class Smallmouth Bass fishery
Managing and understanding fisheries dynamics are becoming more complex as new and seemingly more complicated environmental factors are identified. Often management requires resources beyond that of any one entity and calls for collaboration among partners with differing priorities and backgrounds to account for the complexity of factors influencing fisheries. We present a collaborative...
Authors
Megan K. Schall, Geoffrey Smith, Vicki S. Blazer, Heather L. Walsh, Timothy Wertz, Dustin R. Shull, Tyler Wagner
Predicting climate change impacts on poikilotherms using physiologically guided species abundance models Predicting climate change impacts on poikilotherms using physiologically guided species abundance models
Poikilothermic animals comprise most species on Earth and are especially sensitive to changes in environmental temperatures. Species conservation in a changing climate relies upon predictions of species responses to future conditions, yet predicting species responses to climate change when temperatures exceed the bounds of observed data is fraught with challenges. We present a...
Authors
Tyler Wagner, Erin M. Schliep, Joshua S. North, Holly Kundel, Christopher A. Custer, Jenna K. Ruzich, Gretchen J.A. Hansen
Landscape transcriptomics as a tool for addressing global change effects across diverse species Landscape transcriptomics as a tool for addressing global change effects across diverse species
Landscape transcriptomics is an emerging field studying how genome-wide expression patterns reflect dynamic landscape-scale environmental drivers, including habitat, weather, climate, and contaminants, and the subsequent effects on organismal function. This field is benefitting from advancing and increasingly accessible molecular technologies, which in turn are allowing the necessary
Authors
Jason Keagy, Chloe P. Drummond, Kadeem J. Gilbert, Christina Grozinger, Jill Hamilton, Heather M. Hines, Jesse Lasky, Cheryl A. Logan, Ruairidh Sawers, Tyler Wagner
Approaching the upper boundary of driver-response relationships: Identifying factors using a novel framework integrating quantile regression with interpretable machine learning Approaching the upper boundary of driver-response relationships: Identifying factors using a novel framework integrating quantile regression with interpretable machine learning
The identification of factors that may be forcing ecological observations to approach the upper boundary provides insight into potential mechanisms affecting driver-response relationships, and can help inform ecosystem management, but has rarely been explored. In this study, we propose a novel framework integrating quantile regression with interpretable machine learning. In the first...
Authors
Zhongyao Liang, Yaoyang Xu, Gang Zhao, Wentao Lu, Zhenghui Fu, Shuhang Wang, Tyler Wagner
Freshwater corridors in the conterminous US: A coarse-filter approach based on lake-stream networks Freshwater corridors in the conterminous US: A coarse-filter approach based on lake-stream networks
Maintaining regional-scale freshwater connectivity is challenging owing to the dendritic, easily fragmented structure of freshwater networks, but is essential for promoting ecological resilience under climate change. Although the importance of stream network connectivity has been recognized, lake-stream network connectivity has largely been ignored. Furthermore, protected areas are...
Authors
Ian M. McCullough, Patrick J. Hanly, Katelyn B.S. King, Tyler Wagner
Estrogenic activity response to best management practice implementation in agricultural watersheds in the Chesapeake Bay watershed Estrogenic activity response to best management practice implementation in agricultural watersheds in the Chesapeake Bay watershed
Best management practices (BMPs) have been predominantly used throughout the Chesapeake Bay watershed (CBW) to reduce nutrients and sediments entering streams, rivers, and the bay. These practices have been successful in reducing loads entering the estuary and have shown the potential to reduce other contaminants (pesticides, hormonally active compounds, pathogens) in localized studies...
Authors
Stephanie E. Gordon, Tyler Wagner, Kelly L. Smalling, Olivia H. Devereux
Filter Total Items: 23
Decadal changes in stream fish communities and contemporary ecological drivers of species occupancy in two Appalachian U.S. National Parks Decadal changes in stream fish communities and contemporary ecological drivers of species occupancy in two Appalachian U.S. National Parks
Although conserving fish biodiversity in lotic systems is challenging, protected areas can provide refuge from certain environmental stressors. In the Appalachian region, USA, the National Park Service manages Delaware Water Gap National Recreation Area (DEWA) and New River Gorge National Park & Preserve (NERI) which both contain abundant and diverse freshwater resources. To assess the
R and Python code for analysis of productivity in thousands of US lakes in response to climate over the last 30 years R and Python code for analysis of productivity in thousands of US lakes in response to climate over the last 30 years
Climate change is expected to increase lake productivity and algal blooms and cause regime shifts, particularly in human-impacted ecosystems. However, evidence is lacking for causal relationships between climate and lake productivity or for the nonlinear dynamics needed to demonstrate regime shifts. We modeled causal effects of climate on lake chlorophyll over 34 years in 24,452 US lakes...
Evaluating the effectiveness of joint species distribution modeling for riverine fish communities Evaluating the effectiveness of joint species distribution modeling for riverine fish communities
Species Distribution Models (JSDMs) allow for accounting for both environmental predictors and species dependencies within a single statistical modeling frameworks. However, it is unclear under what conditions incorporating residual species dependencies (conditional predictions) might outperform predictions made using only environmental information (marginal predictions). Here, we...
Feeding Habits and Ecological Implications of the Invasive Flathead Catfish, Pylodictis olivaris, in the Susquehanna River Basin, Pennsylvania Feeding Habits and Ecological Implications of the Invasive Flathead Catfish, Pylodictis olivaris, in the Susquehanna River Basin, Pennsylvania
Flathead Catfish _Pylodictis olivaris_ are a prominent aquatic invasive species within the United States and a recent invader in the Susquehanna River Basin, Pennsylvania. Flathead Catfish are piscivores known to consume native and recreationally important fish species. In the northeastern United States, it is unknown how this invader is impacting food webs and which species may be at...
Predicting fish responses to climate change using a joint species, spatially dependent physiologically guided abundance model Predicting fish responses to climate change using a joint species, spatially dependent physiologically guided abundance model
Predicting the effects of warming temperatures on the abundance and distribution of organisms under future climate scenarios often requires extrapolating species-environment correlations to thermal conditions not currently experienced by a species or to temperatures that exceed the range of observed data. For poikilotherms, incorporating species’ thermal physiology to inform...
The effects of wastewater reuse on smallmouth bass (Micropterus dolomieu) relative abundance in the Shenandoah River Watershed, USA The effects of wastewater reuse on smallmouth bass (Micropterus dolomieu) relative abundance in the Shenandoah River Watershed, USA
R code to evaluate the effects of wastewater reuse on smallmouth bass (Micropterus dolomieu) relative abundance in the Shenandoah River Watershed, USA
Modeling widespread declines in walleye recruitment following zebra mussel invasion in Minnesota lakes Modeling widespread declines in walleye recruitment following zebra mussel invasion in Minnesota lakes
Invasive zebra mussels (Dreissena polymorpha) alter lake ecosystems and can negatively affect first-year growth of walleye (Sander vitreus), potentially lowering walleye recruitment success. We quantified walleye recruitment responses to zebra mussel invasion in Minnesota lakes using data from 1,438 electrofishing surveys across 348 lakes collected between 1993 and 2019 to measure...
Accounting for spatio-temporal variation in catchability in joint species distribution models Accounting for spatio-temporal variation in catchability in joint species distribution models
1: Estimating relative abundance is critical for informing conservation and management efforts and for making inferences about the effects of environmental change on populations. Freshwater fisheries span large geographic regions, occupy diverse habitats, and consist of varying species assemblages. Monitoring schemes used to sample these diverse populations often result in populations...
Per- and Polyfluoroalkyl Substances (PFAS) in U.S. Tapwater: Comparison of Public-Supply and Underserved Private-Well Exposures and Associated Health Implications Per- and Polyfluoroalkyl Substances (PFAS) in U.S. Tapwater: Comparison of Public-Supply and Underserved Private-Well Exposures and Associated Health Implications
This software involves files to fit the statistical models described in Smalling et al. Specifically, there are R scripts and associated stan model files (when appropriate) for comparing PFAS concentrations among public-supply and private-wells and as a function of geospatial predictor variables. There is also an R script for modeling the number of PFAS chemicals detected among water...
Predicting climate change impacts on poikilotherms Predicting climate change impacts on poikilotherms
This software involves files to fit the physiologically-guided abundance (PGA) model ('fish_predictions_pga.R'), a naive model ('fish_predictions_naive.R'), and a PGA model using simulated data ('PGA_sim.R'). Each R file calls as associated .stan file that contains the model code that is executed by stan when running the R code ('fish_prediction.stan', 'fish_prediction_naive.stan', and...
Predicting climate change impacts on poikilotherms using physiologically guided species abundance models Predicting climate change impacts on poikilotherms using physiologically guided species abundance models
R code and .stan files for fitting physiologically guided abundance models for predicting climate change impacts on poikilotherms.