The California Water Science Center's Aquatic Ecology Group is making great strides in research and reporting.
The Aquatic Ecology Group at the US Geological Survey’s California Water Science Center is a team of scientists working to solve important natural science challenges facing society.
Our research covers all aspects of aquatic ecology with a focus on freshwater, estuarine and marine fishes and environments. Particular topics include:
- Water resources
- Threatened and endangered species
- Fish habitat
- Food web dynamics
- Climate change
- Drought
We work closely with scientists in other disciplines at USGS to tackle challenges with comprehensive, interdisciplinary research. A particular strength of our group is the ability to use new technology to generate novel solutions to natural resource problems. We also maintain active collaborations with many federal, state, and local agencies, and universities.
We pursue innovative solutions to a diverse array of natural resource problems through applied research. A large portion of our research is field-based and incorporates elements of behavioral, population, and community ecology. Individual projects range from the biology and ecology of individual species to the effects of climate change on ecosystems.
Studying Threatened Fish Species in Clear Lake, CA
Longfin Smelt Distribution in the Coastal Pacific Ocean
Development of a spatially explicit ecosystem model to explore physiochemical drivers of step changes in POD species abundance and distribution in the Sacramento-San Joaquin Delta and Suisun Bay
Mapping Sturgeon Spawning Habitat in the Lower San Joaquin River
Delta sediment measurements to support numerical modeling of turbidity
Modeling in support of development of biocriteria for wadeable California streams and rivers
The role of the alien clam Corbicula fluminea in the regulation of organic carbon in the San Joaquin River watershed
Implementing New Acoustic Monitoring Techniques in the Trinity River
Role Nutrients Play in Fish Death Rates at Rodeo Lagoon
Estimating Natural Flows for Hydrologic Reference Streams
Application of the SmeltCam to Describe Processes Influencing Delta Smelt Distribution and Movements
Understanding Influences on Habitat Quality for Delta Smelt and Other Imperiled Fish Populations
Below are publications associated with the Aquatic Ecology Group
Synthesis of data and studies relating to Delta Smelt biology in the San Francisco Estuary, emphasizing water year 2017
Disentangling stationary and dynamic estuarine fish habitat to inform conservation: Species-specific responses to physical habitat and water quality in San Francisco Estuary
Toward improved decision-support tools for Delta Smelt management actions
Eye lenses reveal ontogenetic trophic and habitat shifts in an imperiled fish, Clear Lake hitch (Lavinia exilicauda chi)
Use of the smeltCam as an efficient fish sampling alternative within the San Francisco Estuary
Estuarine habitat use by White Sturgeon (Acipenser transmontanus)
Resistance and resilience of pelagic and littoral fishes to drought in the San Francisco Estuary
Hydrodynamics drive pelagic communities and food web structure in a tidal environment
Sacramento pikeminnow migration record
Characterizing benthic macroinvertebrate and algal biological condition gradient models for California wadeable Streams, USA
Cryptic lives of conspicuous animals: Otolith chemistry chronicles life histories of coastal lagoon fishes
Below are news stories associated with this project.
The following list of partners have helped make the work of the Aquatic Ecology Group possible.
- Overview
The California Water Science Center's Aquatic Ecology Group is making great strides in research and reporting.
Members of USGS Aquatic Ecology Group pull a "SmeltCam" from the waters of the Sacramento Deepwater Ship Channel. A SmeltCam is an underwater camera that indentifies fish passing through a net. This data is used to study the presence, population, and daily movement of fish. The Aquatic Ecology Group at the US Geological Survey’s California Water Science Center is a team of scientists working to solve important natural science challenges facing society.
Our research covers all aspects of aquatic ecology with a focus on freshwater, estuarine and marine fishes and environments. Particular topics include:
- Water resources
- Threatened and endangered species
- Fish habitat
- Food web dynamics
- Climate change
- Drought
We work closely with scientists in other disciplines at USGS to tackle challenges with comprehensive, interdisciplinary research. A particular strength of our group is the ability to use new technology to generate novel solutions to natural resource problems. We also maintain active collaborations with many federal, state, and local agencies, and universities.
- Science
We pursue innovative solutions to a diverse array of natural resource problems through applied research. A large portion of our research is field-based and incorporates elements of behavioral, population, and community ecology. Individual projects range from the biology and ecology of individual species to the effects of climate change on ecosystems.
Filter Total Items: 19Studying Threatened Fish Species in Clear Lake, CA
The Clear Lake Hitch (Lavinia exilicauda chi) population, which once flourished in great abundance, has been decimated by loss of spawning habitat, nursery areas, and the encroachment of non-native species. In order to make an informed decision, the California Water Science Center has been asked by the U.S. Fish and Wildlife Service to conduct studies into the fish’s habitat, specifically changes...Longfin Smelt Distribution in the Coastal Pacific Ocean
Longfin Smelt (Spirinchus thaleichthys) is a pelagic fish species found in waters along the Pacific coast, from Alaska to central California. Its complex life cycle makes it vulnerable to threats in both freshwater and at sea. Longfin Smelt is listed as a threatened species by the state of California.Development of a spatially explicit ecosystem model to explore physiochemical drivers of step changes in POD species abundance and distribution in the Sacramento-San Joaquin Delta and Suisun Bay
Prior to 2000, the four most abundant resident pelagic fishes in the study area included two native species, delta smelt (Hypomesus transpacificus) a federal listed endangered species, and longfin smelt (Spirinchus thaleicthys) a state listed endangered species, and two introduced species, threadfin shad (Dorosoma petenense) and age-0 striped bass (Morone saxatilis).Mapping Sturgeon Spawning Habitat in the Lower San Joaquin River
The spawning of adult white sturgeon (Acipenser transmontanus) in the lower San Joaquin River was documented recently by the United States Fish and Wildlife Service (USFWS) (Gruber and others, 2012; Jackson and Eenennaam, 2013). Streamflow on the San Joaquin River has been modified by State and Federal water project operations, and there are a variety of questions regarding the effects on fish...Delta sediment measurements to support numerical modeling of turbidity
The purpose of the proposed work is to collect data that will support the development, calibration, and validation of numerical models of sediment transport and turbidity in the Sacramento-San Joaquin Delta.Modeling in support of development of biocriteria for wadeable California streams and rivers
The State Water Resources Control Board (SWRCB) of California has initiated a process to develop biological objectives for wadeable freshwater streams and rivers for the entire state.The role of the alien clam Corbicula fluminea in the regulation of organic carbon in the San Joaquin River watershed
Sources and fate of various forms of organic carbon in the Sacramento-San Joaquin Delta (Delta) and San Joaquin River watershed are of concern because of the importance of identifying the sources of carbon contributing to the oxygen depletion zone on the San Joaquin River near the city of Stockton, the need to understand the causes of the low primary and secondary production in the Delta, and the...Implementing New Acoustic Monitoring Techniques in the Trinity River
Accurate river-sediment data is fundamental to planning and managing river restoration efforts on the Trinity River, and throughout the world’s waterways. The USGS has developed a “hydrophone” that enables scientists to listen to sediment particles as they move along the riverbed in order to inexpensively and reliably record near-continuous sediment-bedload-transport data. For this study...Role Nutrients Play in Fish Death Rates at Rodeo Lagoon
Scientists investigate excessive nutients levels in Rodeo Lagoon that are believed to be cause of dying fishEstimating Natural Flows for Hydrologic Reference Streams
Scientists develop metrics of expected hydrological conditions at ungaged sites throughout CalliforniaApplication of the SmeltCam to Describe Processes Influencing Delta Smelt Distribution and Movements
The California Water Science Center's "SmeltCam" helps describe processes influencing Delta Smelt distribution and movement.Understanding Influences on Habitat Quality for Delta Smelt and Other Imperiled Fish Populations
USGS scientists work to provide information needed to evaluate the efficacy of ongoing U.S. Burueau of Reclamation water management efforts in Bay-Delta. - Publications
Below are publications associated with the Aquatic Ecology Group
Filter Total Items: 28Synthesis of data and studies relating to Delta Smelt biology in the San Francisco Estuary, emphasizing water year 2017
In the San Francisco Estuary (SFE), the effects of freshwater flow on the aquatic ecosystem have been studied extensively over the years and remains a contentious management issue. It is especially contentious with regards to the Delta Smelt (Hypomesus transpacificus), a species endemic to the SFE that has been listed as threatened under the Federal Endangered Species Act and endangered by the StaDisentangling stationary and dynamic estuarine fish habitat to inform conservation: Species-specific responses to physical habitat and water quality in San Francisco Estuary
Estuaries represent critical aquatic habitat that connects surface water distributed between Earth’s landmasses and oceans. They are dynamic transitional ecosystems, which provide important habitat for fishes and other aquatic organisms. Effective conservation of species inhabiting estuaries requires knowledge of the habitat features that drive their abundance and distribution. We sought to elucidToward improved decision-support tools for Delta Smelt management actions
The Collaborative Science and Adaptive Management Program (CSAMP) has endorsed a goal of reversing the recent downward trajectory of the Delta Smelt population within 5-10 generations, with the long-term aim of establishing a self-sustaining population. An ambitious agenda of management actions is planned, and more management actions are being considered. This White Paper furthers one of the recomEye lenses reveal ontogenetic trophic and habitat shifts in an imperiled fish, Clear Lake hitch (Lavinia exilicauda chi)
Stable isotopes recorded in fish eye lenses are an emerging tool to track dietary shifts coincident with use of diverse habitats over the lifetime of individuals. Eye lenses are metabolically inert, sequentially deposited, archival tissues that can open avenues to chronicle contaminant exposures, diet histories, trophic dynamics and migratory histories of individual fishes. In this study, we demonUse of the smeltCam as an efficient fish sampling alternative within the San Francisco Estuary
Resource managers often rely on long-term monitoring surveys to detect trends in biological data. However, no survey gear is 100% efficient, and many sources of bias can be responsible for detecting or not detecting biological trends. The SmeltCam is an imaging apparatus developed as a potential sampling alternative to long-term trawling gear surveys within the San Francisco Estuary, California, tEstuarine habitat use by White Sturgeon (Acipenser transmontanus)
White Sturgeon (Acipenser transmontanus), a species of concern in the San Francisco Estuary, is in relatively low abundance due to a variety of factors. The purpose of our study was to identify the estuarine habitat used by White Sturgeon to aid in the conservation and management of the species locally and across its range. We seasonally sampled sub-adult and adult White Sturgeon in the central eResistance and resilience of pelagic and littoral fishes to drought in the San Francisco Estuary
Many estuarine ecosystems and the fish communities that inhabit them have undergone substantial changes in the past several decades, largely due to multiple interacting stressors that are often of anthropogenic origin. Few are more impactful than droughts, which are predicted to increase in both frequency and severity with climate change. In this study, we examined over five decades of fish monitoHydrodynamics drive pelagic communities and food web structure in a tidal environment
Hydrodynamic processes can lead to the accumulation and/or dispersal of water column constituents, including sediment, phytoplankton, and particulate detritus. Using a combination of field observations and stable isotope tracing tools, we identified how hydrodynamic processes influenced physical habitat, pelagic communities, and food web structure in a freshwater tidal system. The pelagic habitatSacramento pikeminnow migration record
Sacramento Pikeminnow Ptychocheilus grandis is a potamodromous species endemic to mid- and low-elevation streams and rivers of Central and Northern California. Adults are known to undertake substantial migrations, typically associated with spawning, though few data exist on the extent of these migrations. Six Sacramento Pikeminnow implanted with passive integrated transponder tags in the SacramentCharacterizing benthic macroinvertebrate and algal biological condition gradient models for California wadeable Streams, USA
The Biological Condition Gradient (BCG) is a conceptual model that describes changes in aquatic communities under increasing levels of anthropogenic stress. The BCG helps decision-makers connect narrative water quality goals (e.g., maintenance of natural structure and function) to quantitative measures of ecological condition by linking index thresholds based on statistical distributions (e.g., peCryptic lives of conspicuous animals: Otolith chemistry chronicles life histories of coastal lagoon fishes
Bar-built coastal lagoons are dynamic ecosystems at the land-sea interface that are important habitats for a variety of species. This study examined the habitat ecology of two lagoon species, the endangered Tidewater Goby (Eucyclogobius newberryi) and the Prickly Sculpin (Cottus asper) by reconstructing individual life histories from patterns in the concentration of the element Sr (as ratioed to C - News
Below are news stories associated with this project.
- Partners
The following list of partners have helped make the work of the Aquatic Ecology Group possible.