Tidal Wetlands
Loss of tidal wetland habitat in the San Francisco Estuary affects fish and other aquatic organisms.
Longfin Smelt
Longfin Smelt is a threatened species found in waters along the Pacific coast. Its complex life cycle makes it vulnerable in both freshwater and at sea.
Sacramento Splittail
Spinal deformities in California native fish species, the Sacramento Splittail, are now attributed to exposure to the chemical element selenium.
The California Water Science Center's Aquatic Ecology Group is making great strides in research and reporting.
The Aquatic Ecology Group at the US Geological Survey’s California Water Science Center is a team of scientists working to solve important natural science challenges facing society.
Our research covers all aspects of aquatic ecology with a focus on freshwater, estuarine and marine fishes and environments. Particular topics include:
- Water resources
- Threatened and endangered species
- Fish habitat
- Food web dynamics
- Climate change
- Drought
We work closely with scientists in other disciplines at USGS to tackle challenges with comprehensive, interdisciplinary research. A particular strength of our group is the ability to use new technology to generate novel solutions to natural resource problems. We also maintain active collaborations with many federal, state, and local agencies, and universities.
We pursue innovative solutions to a diverse array of natural resource problems through applied research. A large portion of our research is field-based and incorporates elements of behavioral, population, and community ecology. Individual projects range from the biology and ecology of individual species to the effects of climate change on ecosystems.
Bay-Delta Catchability Study
Santa Ana River Native Fish Study
Hydrologic and Aquatic Ecology Studies at Clear Lake, California
Studying Threatened Fish Species in Clear Lake, CA
Longfin Smelt Distribution in the Coastal Pacific Ocean
Development of a spatially explicit ecosystem model to explore physiochemical drivers of step changes in POD species abundance and distribution in the Sacramento-San Joaquin Delta and Suisun Bay
Mapping Sturgeon Spawning Habitat in the Lower San Joaquin River
Delta sediment measurements to support numerical modeling of turbidity
Modeling in support of development of biocriteria for wadeable California streams and rivers
The role of the alien clam Corbicula fluminea in the regulation of organic carbon in the San Joaquin River watershed
Implementing New Acoustic Monitoring Techniques in the Trinity River
Role Nutrients Play in Fish Death Rates at Rodeo Lagoon
Abundance and Distribution of Fishes in Clear Lake, Lake County, California, 2017-2023
Fish distribution and tidal currents in the Upper San Francisco Estuary, 2022-2023 (ver. 2.0, March 2024)
Post Carr Fire Bioassessment Data, Whiskeytown National Recreation Area, Shasta County, California, 2020
Santa Ana River Native Fish Population and Habitat Data, Santa Ana River, California, 2022
Distribution and stomach contents of fishes in the northern Sacramento-San Joaquin Delta, 2020-2022
Detection range and efficiency of acoustic telemetry receivers in Clear Lake, Lake County, California
Vertical Distribution of Longfin Smelt in the San Francisco Estuary (ver. 2.1, August 2020)
SAR 2018 Native Fish Population and Habitat Study, Santa Ana and San Gabriel Rivers, California
Below are publications associated with the Aquatic Ecology Group
Wetland geomorphology and tidal hydrodynamics drive fine-scale fish community composition and abundance
Physics to fish—Understanding the factors that create and sustain native fish habitat in the San Francisco Estuary
Etiology of a fish kill, Including the endangered Tidewater Goby (Eucyclogobius newberryi), in a northeastern pacific coastal lagoon
Microhabitat use of native Santa Ana sucker and arroyo chub in an effluent-dominated southern California stream
Hydrodynamics structure plankton communities and interactions in a freshwater tidal estuary
Hydrodynamics and habitat interact to structure fish communities within terminal channels of a tidal freshwater delta
Joint-species analysis reveals potential displacement of native fishes by non-native fishes within the Santa Ana River, California
Synthesis of data and studies relating to Delta Smelt biology in the San Francisco Estuary, emphasizing water year 2017
Disentangling stationary and dynamic estuarine fish habitat to inform conservation: Species-specific responses to physical habitat and water quality in San Francisco Estuary
Toward improved decision-support tools for Delta Smelt management actions
Eye lenses reveal ontogenetic trophic and habitat shifts in an imperiled fish, Clear Lake hitch (Lavinia exilicauda chi)
Use of the smeltCam as an efficient fish sampling alternative within the San Francisco Estuary
Below are news stories associated with this project.
The following list of partners have helped make the work of the Aquatic Ecology Group possible.
The California Water Science Center's Aquatic Ecology Group is making great strides in research and reporting.
The Aquatic Ecology Group at the US Geological Survey’s California Water Science Center is a team of scientists working to solve important natural science challenges facing society.
Our research covers all aspects of aquatic ecology with a focus on freshwater, estuarine and marine fishes and environments. Particular topics include:
- Water resources
- Threatened and endangered species
- Fish habitat
- Food web dynamics
- Climate change
- Drought
We work closely with scientists in other disciplines at USGS to tackle challenges with comprehensive, interdisciplinary research. A particular strength of our group is the ability to use new technology to generate novel solutions to natural resource problems. We also maintain active collaborations with many federal, state, and local agencies, and universities.
We pursue innovative solutions to a diverse array of natural resource problems through applied research. A large portion of our research is field-based and incorporates elements of behavioral, population, and community ecology. Individual projects range from the biology and ecology of individual species to the effects of climate change on ecosystems.
Bay-Delta Catchability Study
Santa Ana River Native Fish Study
Hydrologic and Aquatic Ecology Studies at Clear Lake, California
Studying Threatened Fish Species in Clear Lake, CA
Longfin Smelt Distribution in the Coastal Pacific Ocean
Development of a spatially explicit ecosystem model to explore physiochemical drivers of step changes in POD species abundance and distribution in the Sacramento-San Joaquin Delta and Suisun Bay
Mapping Sturgeon Spawning Habitat in the Lower San Joaquin River
Delta sediment measurements to support numerical modeling of turbidity
Modeling in support of development of biocriteria for wadeable California streams and rivers
The role of the alien clam Corbicula fluminea in the regulation of organic carbon in the San Joaquin River watershed
Implementing New Acoustic Monitoring Techniques in the Trinity River
Role Nutrients Play in Fish Death Rates at Rodeo Lagoon
Abundance and Distribution of Fishes in Clear Lake, Lake County, California, 2017-2023
Fish distribution and tidal currents in the Upper San Francisco Estuary, 2022-2023 (ver. 2.0, March 2024)
Post Carr Fire Bioassessment Data, Whiskeytown National Recreation Area, Shasta County, California, 2020
Santa Ana River Native Fish Population and Habitat Data, Santa Ana River, California, 2022
Distribution and stomach contents of fishes in the northern Sacramento-San Joaquin Delta, 2020-2022
Detection range and efficiency of acoustic telemetry receivers in Clear Lake, Lake County, California
Vertical Distribution of Longfin Smelt in the San Francisco Estuary (ver. 2.1, August 2020)
SAR 2018 Native Fish Population and Habitat Study, Santa Ana and San Gabriel Rivers, California
Below are publications associated with the Aquatic Ecology Group
Wetland geomorphology and tidal hydrodynamics drive fine-scale fish community composition and abundance
Physics to fish—Understanding the factors that create and sustain native fish habitat in the San Francisco Estuary
Etiology of a fish kill, Including the endangered Tidewater Goby (Eucyclogobius newberryi), in a northeastern pacific coastal lagoon
Microhabitat use of native Santa Ana sucker and arroyo chub in an effluent-dominated southern California stream
Hydrodynamics structure plankton communities and interactions in a freshwater tidal estuary
Hydrodynamics and habitat interact to structure fish communities within terminal channels of a tidal freshwater delta
Joint-species analysis reveals potential displacement of native fishes by non-native fishes within the Santa Ana River, California
Synthesis of data and studies relating to Delta Smelt biology in the San Francisco Estuary, emphasizing water year 2017
Disentangling stationary and dynamic estuarine fish habitat to inform conservation: Species-specific responses to physical habitat and water quality in San Francisco Estuary
Toward improved decision-support tools for Delta Smelt management actions
Eye lenses reveal ontogenetic trophic and habitat shifts in an imperiled fish, Clear Lake hitch (Lavinia exilicauda chi)
Use of the smeltCam as an efficient fish sampling alternative within the San Francisco Estuary
Below are news stories associated with this project.
The following list of partners have helped make the work of the Aquatic Ecology Group possible.