Data
Access scientific datasets from the USGS National Wildlife Health Center below. Wildlife morbidity and mortality event data can be accessed through WHISPers. If you can't find the data you are looking for, contact whispers@usgs.gov.
Filter Total Items: 120
Determinants of Pseudogymnoascus destructans within bat hibernacula: data Determinants of Pseudogymnoascus destructans within bat hibernacula: data
This dataset includes data used to summarize trends and identify best-fit models to explain patterns in presence-absence and abundance of Pseudogymnoascus destructans (Pd) in environmental substrates and on bats within six bat hibernacula at different stages of white-nose syndrome (WNS). Data relating to environmental substrates include: dates and relative spatial locations of samples...
An examination of the effect of aerosolized Permanone insecticide on zebra finch susceptibility to West Nile virus An examination of the effect of aerosolized Permanone insecticide on zebra finch susceptibility to West Nile virus
Following building an aerosol exposure chamber in which we could expose domesticated zebra finches, we examined the effects of exposure to aerosolized Permanone® 30:30 insecticide (permethrin and piperonyl butoxide in soy oil vehicle) at ~103-106 x potential environmental concentrations on the response to experimental challenge with West Nile virus (WNV). Compared to vehicle control...
Pathogenic lineage of Perkinsea causes mass mortality of frogs across the USA: Data Pathogenic lineage of Perkinsea causes mass mortality of frogs across the USA: Data
Severe perkinsea data was based on the observation of characteristic gross and microscopic lesions and the morphological identification of Perkinsea organisms within the lesions. Necropsies and gross evaluation of carcasses were carried out under a dissecting microscope. Specimen were collected and submitted to the NWHC as part of mortality investigations and collection of specimen from...
Monkeypox challenge of rope squirrels: data Monkeypox challenge of rope squirrels: data
Monkeypox virus (MPXV) is a zoonotic disease endemic in Central and West Africa and is the most virulent orthopoxvirus affecting humans since the eradication of variola virus (VARV). In order to assess their reservoir potential, wild-caught rope squirrels were experimentally infected via intranasal and intradermal exposure with a recombinant MPXV strain from Central Africa engineered to...
Natural infections with Pigeon Paramyxovirus-1: Pathologic changes in Eurasian collared-doves (Streptopelia decaocto) and rock pigeons (Columba livia) in the USA: Data Natural infections with Pigeon Paramyxovirus-1: Pathologic changes in Eurasian collared-doves (Streptopelia decaocto) and rock pigeons (Columba livia) in the USA: Data
We reviewed pathological findings and to a lesser extent epidemiological data from 70 free-ranging columbiforms naturally infected with Pigeon paramyxovirus-1 (PPMV-1) from 25 different PPMV-1 mortality events in columbiforms in the USA. In a subset of 17 birds from 10 of the studied outbreaks, we carried out immunohistochemistry targeting PPMV-1 nucleoprotein to determine the tissue...
WNS Summer Surveillance: DATA WNS Summer Surveillance: DATA
Bats occupying hibernacula during summer months may play an important role in the epidemiology of white-nose syndrome (WNS). For example, bats exposed to viable Pseudogymnoascus destructans (Pd), the causative agent of WNS, in late summer could spread the fungus by transmitting it to other bats or to other locations suitable for establishment of new environmental reservoirs. To explore...
Field efficacy trials with sylvatic plague vaccine Field efficacy trials with sylvatic plague vaccine
These data were collected as part of a field trial to test the efficacy of a sylvatic plague vaccine. Treatment and control sites were selected randomly from the available sites at each location. Site pairs were a minimum of 20 acres, (with a few exceptions). Prairie dog trapping took place a minimum of two weeks post-baiting and trapping procedures were approved by the NWHC Animal Care...
Transcriptional response to West Nile virus infection in the zebra finch (Taeniopygia guttata), a songbird model for immune function: Data Transcriptional response to West Nile virus infection in the zebra finch (Taeniopygia guttata), a songbird model for immune function: Data
The data set contains paired-end, 100 nucleotide long RNA sequencing reads for each sample. Raw sequencing reads ranged from 18-30million reads per sample. Quality trimmed reads were mapped to the Zebra Finch reference genome with an average of 79.0-80.8% mapping rate, corresponding to 18,618 Ensembl gene IDs. Of these, 14,114 genes averaged at least 5 mapped reads across all samples and...
Serum biochemistries of Pacific black brant Serum biochemistries of Pacific black brant
The data set contains results for nine serum biochemistries in molting Pacific black brant (Branta bernicla nigricans). These data were used to calculate reference intervals (sometimes referred to as normal values) for the nine serum biochemistries. All brant were after-hatch year. All samples were collected in 2006 and 2007 in the Teshekpuk Lake Special Area, Alaska.
Pufferfish mortality data Pufferfish mortality data
In 2010, a mass mortality of pufferfish in Hawaii was dominated by Arothron hispidus showing aberrant neurological behaviors. Using pathology, toxinology, and field surveys, we implicated a series of novel, polar, marine toxins as a likely cause of this mass mortality. Our findings are striking in that 1) a marine toxin was associated with a kill of a fish species that is, itself, toxic...
Snake dermatitis data Snake dermatitis data
Snake fungal disease (SFD) is an emerging disease of wild snakes in eastern North America caused by the fungus Ophidiomyces ophiodiicola. The data presented here describe: 1) the types of fungi recovered in culture from the skin of snakes with and without fungal skin infections, 2) the presence or absence of skin lesions in populations of snakes surveyed at several sites in Wisconsin and...
Susceptibility and antibody response of the laboratory model zebra finch Susceptibility and antibody response of the laboratory model zebra finch
The data set contains the results of experimental challenge of captive zebra finches with an American crow isolate of West Nile virus. Data include infectivity, mortality, viremia, oral shedding of virus, and serology for anti- WNV antibodies. Australian and Timor zebra finches were used in this study and both are useful as a laboratory model of an avian species with moderate susceptib