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Publications

This is a list of publications written by Patuxent employees since Patuxent opened in 1939.  To search for Patuxent's publications by author or title, please click below to go to the USGS Publication Warehouse.

Filter Total Items: 8234

Inferring pathogen presence when sample misclassification and partial observation occur

Surveillance programmes are essential for detecting emerging pathogens and often rely on molecular methods to make inference about the presence of a target disease agent. However, molecular methods rarely detect target DNA perfectly. For example, molecular pathogen detection methods can result in misclassification (i.e. false positives and false negatives) or partial detection errors (i.e. detecti
Authors
Evan H. Campbell Grant, Riley O. Mummah, Brittany A. Mosher, Jonah Evans, Graziella Vittoria DiRenzo

A simplified method for value of information using constructed scales

The value of information is a central concept in decision analysis, used to quantify how much the expected outcome of a decision would be improved if epistemic uncertainty could be resolved prior to committing to a course of action. One of the challenges, however, in quantitative analysis of the value of information is that the calculations are demanding, especially in requiring predictions of out
Authors
Michael C. Runge, Clark S. Rushing, James E. Lyons, Madeleine A. Rubenstein

Observed and projected functional reorganization of riverine fish assemblages from global change

Climate and land-use/land-cover change (‘global change’) are restructuring biodiversity, globally. Broadly, environmental conditions are expected to become warmer, potentially drier (particularly in arid regions), and more anthropogenically developed in the future, with spatiotemporally complex effects on ecological communities. We used functional traits to inform Chesapeake Bay Watershed fish res
Authors
Taylor E Woods, Mary Freeman, Kevin P. Krause, Kelly O. Maloney

Does coat colour influence survival? A test in a cyclic population of snowshoe hares

Some mammal species inhabiting high-latitude biomes have evolved a seasonal moulting pattern that improves camouflage via white coats in winter and brown coats in summer. In many high-latitude and high-altitude areas, the duration and depth of snow cover has been substantially reduced in the last five decades. This reduction in depth and duration of snow cover may create a mismatch between coat co
Authors
Madan K. Oli, Alice J Kenny, Rudy Boonstra, Stan Boutin, Dennis L. Murray, Michael J.L. Peers, B. Scott Gilbert, Thomas S. Jung, Vratika Chaudhary, James E. Hines, Charles J Krebs

Population dynamics and harvest management of eastern mallards

Managing sustainable harvest of wildlife populations requires regular collection of demographic data and robust estimates of demographic parameters. Estimates can then be used to develop a harvest strategy to guide decision-making. Mallards (Anas platyrhynchos) are an important species in the Atlantic Flyway for many users and they exhibited exponential growth in the eastern United States between
Authors
Anthony J. Roberts, Jeffrey A. Hostetler, Joshua C. Stiller, Patrick K. Devers, William Link

Low estradiol production of non-laying whooping cranes (Grus americana) is associated with the failure of small follicles to enter follicular hierarchy

For endangered species managed ex situ, production of offspring is a key factor to ensure healthy and self-sustaining populations. However, current breeding goals for the whooping crane (Grus americana) are impeded by poor reproduction. Our study sought to better understand mechanisms regulating ovarian function in ex situ managed whooping cranes and the regulatory function of the hypothalamic-pit
Authors
Megan E. Brown, Budhan Pukazhenthi, Glenn H. Olsen, Chris Crowe, Warren Lynch, David E Wildt, Nucharin Songsasen

The pathogenesis of a 2022 North American highly pathogenic clade 2.3.4.4b H5N1 avian influenza virus in mallards (Anas platyrhynchos)

Highly pathogenic (HP) avian influenza viruses (AIVs) of the clade 2.3.4.4 goose/Guangdong/1996 H5 lineage continue to be a problem in poultry and wild birds in much of the world. The recent incursion of a H5N1 clade 2.3.4.4b HP AIV from this lineage into North America has resulted in widespread outbreaks in poultry and consistent detections of the virus across diverse families of birds and occasi
Authors
Erica Spackman, Mary J. Pantin-Jackwood, Scott A. Lee, Diann Prosser

Stream restoration produces transitory, not permanent, changes to fish assemblages at compensatory mitigation sites

There is inconsistent evidence that stream restoration projects lead to recovery of ecosystem attributes, especially stream biota. While some assessments have documented desired changes in fish community metrics in the first years following restoration, longer-term studies have not always corroborated these findings. In this study, we used data and monitoring reports submitted to federal regulator
Authors
Edward S. Stowe, Kelly N. Petersen, Shishir Rao, Eric J. Walther, Mary Freeman, Seth J. Wenger

Decision making for Centennial Valley Arctic Grayling conservation on Red Rocks Lake National Wildlife Refuge

This report describes a decision analysis process that was conducted in support of a U.S. Fish and Wildlife Service Environmental Assessment on Arctic grayling (Thymallus arcticus) on Red Rocks Lake National Wildlife Refuge in the Centennial Valley, Montana.
Authors
Jonathan D. Cook, Kyle Flynn, Donovan A. Bell, Matthew E. Jaeger, Jeff Warren, Ryan Kreiner, Jarrett Payne, Jaron Andrews, Andrew Brummond, Evan H. Campbell Grant, Sarah Nelson Sells

Qualitative value of information provides a transparent and repeatable method for identifying critical uncertainty

Conservation decisions are often made in the face of uncertainty because the urgency to act can preclude delaying management while uncertainty is resolved. In this context, adaptive management is attractive, allowing simultaneous management and learning. An adaptive program design requires the identification of critical uncertainties that impede the choice of management action. Quantitative evalua
Authors
Michelle L Stantial, Abigail Jean Lawson, Auriel M.V. Fournier, Peter J. Kappes, Chelsea S. Kross, Michael C. Runge, Mark S. Woodrey, James E. Lyons

Conservation genomics reveals low connectivity among populations of threatened roseate terns (Sterna dougallii) in the Atlantic Basin

While the effects of barriers to dispersal such as population declines, habitat fragmentation, and geographic distance have been well-documented in terrestrial wildlife, factors impeding the dispersal of highly vagile taxa such as seabirds are less well understood. The roseate tern (Sterna dougallii) is a globally distributed seabird species, but populations tend to be both fragmented and small, a
Authors
Paige A. Byerly, R. Terry Chesser, Robert C. Fleischer, Nancy McInerney, Natalia Przelomska, Paul S Leberg

Waterfowl recently infected with low pathogenic avian influenza exhibit reduced local movement and delayed migration

Understanding relationships between infection and wildlife movement patterns is important for predicting pathogen spread, especially for multispecies pathogens and those that can spread to humans and domestic animals, such as avian influenza viruses (AIVs). Although infection with low pathogenic AIVs is generally considered asymptomatic in wild birds, prior work has shown that influenza-infected b
Authors
Claire S. Teitelbaum, Michael L. Casazza, Fiona McDuie, Susan E. W. De La Cruz, Cory T. Overton, Laurie Anne Hall, Elliott Matchett, Josh T. Ackerman, Jeffery D. Sullivan, Andrew M. Ramey, Diann Prosser
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