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Publications

This is a list of publications written by Patuxent employees since Patuxent opened in 1939.  To search for Patuxent's publications by author or title, please click below to go to the USGS Publication Warehouse.

Filter Total Items: 8128

Variability in marsh migration potential determined by topographic rather than anthropogenic constraints in the Chesapeake Bay region Variability in marsh migration potential determined by topographic rather than anthropogenic constraints in the Chesapeake Bay region

Sea level rise (SLR) and saltwater intrusion are driving inland shifts in coastal ecosystems. Here, we make high-resolution (1 m) predictions of land conversion under future SLR scenarios in 81 watersheds surrounding Chesapeake Bay, United States, a hotspot for accelerated SLR and saltwater intrusion. We find that 1050–3748 km2 of marsh could be created by 2100, largely at the expense of...
Authors
Grace Molino, Joel A. Carr, Neil K. Ganju, Matt L. Kirwan

Estimating occupancy from autonomous recording unit data in the presence of misclassifications and detection heterogeneity Estimating occupancy from autonomous recording unit data in the presence of misclassifications and detection heterogeneity

1. Autonomous Recording Units (ARUs) are now widely used to survey communities of species. These surveys generate spatially and temporally replicated counts of unmarked animals, but such data typically include false negatives and misclassified detections, both of which may vary across sites in proportion to abundance. These data challenges can bias estimates of occupancy, and the typical...
Authors
Matt Clement, Andy Royle, Ronald Mixan

Exposure to crop production alters cecal prokaryotic microbiota, inflates virulome and resistome in wild prairie grouse Exposure to crop production alters cecal prokaryotic microbiota, inflates virulome and resistome in wild prairie grouse

Chemically intensive crop production depletes wildlife food resources, hinders animal development, health, survival, and reproduction, and it suppresses wildlife immune systems, facilitating emergence of infectious diseases with excessive mortality rates. Gut microbiota is crucial for wildlife's response to environmental stressors. Its composition and functionality are sensitive to diet...
Authors
Serguei Vyacheslavovich Drovetski, Brian K. Schmidt, Jonas Ethan Lai, Michael S. Gross, Michelle L. Hladik, Kenan Oguz Matterson, Natalie Karouna-Renier

Amphibian mucus triggers a developmental transition in the frog-killing chytrid fungus Amphibian mucus triggers a developmental transition in the frog-killing chytrid fungus

The frog-killing chytrid fungus Batrachochytrium dendrobatidis (Bd) is decimating amphibian populations around the world. Bd has a biphasic life cycle, alternating between motile zoospores that disperse within aquatic environments and sessile sporangia that grow within the mucus-coated skin of amphibians. Zoospores lack cell walls and swim rapidly through aquatic environments using a...
Authors
Kristyn A. Robinson, Sarah M. Prostak, Evan H. Campbell Grant, Lillian K. Fritz-Laylin

Evaluating the risk of SARS-CoV-2 transmission to bats in the context of wildlife research, rehabilitation, and control Evaluating the risk of SARS-CoV-2 transmission to bats in the context of wildlife research, rehabilitation, and control

Preventing wildlife disease outbreaks is a priority for natural resource agencies, and management decisions can be urgent, especially in epidemic circumstances. With the emergence of SARS-CoV-2, wildlife agencies were concerned whether the activities they authorize might increase the risk of viral transmission from humans to North American bats, but had a limited amount of time in which...
Authors
Jonathan D. Cook, Evan H. Campbell Grant, Jeremy T. H. Coleman, Jonathan M. Sleeman, Michael C. Runge

Collaborative hubs: Making the most of predictive epidemic modeling Collaborative hubs: Making the most of predictive epidemic modeling

The COVID-19 pandemic has made it clear that epidemic models play an important role in how governments and the public understand and respond to infectious disease crises. In the early days of the COVID-19 pandemic, models were used first to estimate the true number of infections, then to provide estimates of key parameters, to generate short-term forecasts of outbreak trends, and to...
Authors
Nicholas G. Reich, Justin Lessler, Sebastian Funk, Cecile Viboud, Alessandro Vespignani, Ryan J Tibshirani, Katriona Shea, Melanie Schienle, Michael C. Runge, Roni Rosenfeld, Evan L Ray, Rene Niehus, Helen C Johnson, Michael A Johansson, Harry Hochheiser, Lauren Gardner, Johannes Bracher, Rebecca K. Borchering, Matthew Biggerstaff

Estimating species misclassification with occupancy dynamics and encounter rates: A semi-supervised, individual-level approach Estimating species misclassification with occupancy dynamics and encounter rates: A semi-supervised, individual-level approach

1. Large-scale, long-term biodiversity monitoring is essential to conservation, land management, and identifying threats to biodiversity. However, multispecies surveys are prone to various types of observation error, including false positive/negative detection, and misclassification, where a species is thought to have been encountered but not correctly identified. Previous methods assume...
Authors
Anna Spiers, Andy Royle, Christa Torrens, Maxwell Joseph

Atmospheric river storm flooding influences tidal marsh elevation building processes Atmospheric river storm flooding influences tidal marsh elevation building processes

Disturbances are a key component of ecological processes in coastal ecosystems. Investigating factors that affect tidal marsh accretion and elevation change is important, largely due to accelerating sea-level rise and the ecological and economic value of wetlands. Sediment accumulation rates, elevation change, and flooding were examined at five marshes along a riverine-tidal gradient in...
Authors
Karen M. Thorne, Scott Jones, Chase M. Freeman, Kevin Buffington, Christopher N. Janousek, Glenn R. Guntenspergen

Temperature optimum for marsh resilience and carbon accumulation revealed in a whole ecosystem warming experiment Temperature optimum for marsh resilience and carbon accumulation revealed in a whole ecosystem warming experiment

Coastal marshes are globally important, carbon dense ecosystems simultaneously maintained and threatened by sea-level rise. Warming temperatures may increase wetland plant productivity and organic matter accumulation, but temperature-modulated feedbacks between productivity and decomposition make it difficult to assess how wetlands and their thick, organic rich soils will respond to...
Authors
Alexander J. Smith, Genevieve L. Noyce, J. Patrick Megonigal, Glenn R. Guntenspergen, Matthew L. Kirwan

Summary and synthesis of 15 years of the Amphibian Vital Sign monitoring in the National Capital Region Inventory and Monitoring Network Summary and synthesis of 15 years of the Amphibian Vital Sign monitoring in the National Capital Region Inventory and Monitoring Network

The amphibian monitoring program, designed and conducted by the U.S. Geological Survey’s Amphibian Research and Monitoring Initiative program, is designed to estimate the status and trends of amphibian populations to assist management decisions in individual parks and across the National Capital Region Network. Detection/non-detection data for stream and wetland habitats has been...
Authors
Evan H. Campbell Grant, Adrianne Brand, AD Wright

Optimization of salt marsh management at the Petit Manan National Wildlife Refuge of the Maine Coastal Islands National Wildlife Refuge Complex, Maine, through use of structured decision making Optimization of salt marsh management at the Petit Manan National Wildlife Refuge of the Maine Coastal Islands National Wildlife Refuge Complex, Maine, through use of structured decision making

Structured decision making is a systematic, transparent process for improving the quality of complex decisions by identifying measurable management objectives and feasible management actions; predicting the potential consequences of management actions relative to the stated objectives; and selecting a course of action that maximizes the total benefit achieved and balances tradeoffs among
Authors
Hilary A. Neckles, James E. Lyons, Jessica L. Nagel, Susan C. Adamowicz, Toni Mikula, Sara Williams

Evaluating the effect of expert elicitation techniques on population status assessment in the face of large uncertainty Evaluating the effect of expert elicitation techniques on population status assessment in the face of large uncertainty

Population projection models are important tools for conservation and management. They are often used for population status assessments, for threat analyses, and to predict the consequences of conservation actions. Although conservation decisions should be informed by science, critical decisions are often made with very little information to support decision-making. Conversely...
Authors
Jennifer F. Moore, Julien Martin, Hardin Waddle, Evan H. Campbell Grant, Jillian Elizabeth Fleming, Eve Bohnett, Thomas S.B. Akre, Donald J. Brown, Michael T. Jones, Jessica R. Meck, Kevin J. Oxenrider, Anthony Tur, Lisabeth L. Willey, Fred A Johnson
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