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Data

Below, you can find our stand alone data releases. For contemporary articles and their associated data, please visit our publications tab. We include tools that were developed to streamline analysis using different mediums. For further information, please contact authors.

Filter Total Items: 246

Sediment deposition and accretion data from a tidal salt marsh in South San Francisco Bay, California 2021-2022

The U.S. Geological Survey, Western Ecological Research Center collected sediment and accretion data at a wave-exposed tidal salt marsh in South San Francisco Bay, California. Sediment traps and feldspar marker horizons (MH) were deployed along transects of increasing distance from the sediment source, at primary, secondary and tertiary marsh channels/bay. Data were collected bi-monthly over two m

Microsatellite Genetic Marker Genotypes from Southern Mule Deer (Odocoileus hemionus fuliginatus) Sampled in San Diego County, California

Collection of microsatellite genetic data from multiple projects involving southern mule deer (Odocoileus hemionus fuliginatus) in San Diego County, California. Samples were collected 2005-2007, 2010, 2012-2013, 2015, and 2018-2020. These data support the following publication: Mitelberg, A., Smith, J.G., and Vandergast, A.G., 2019, DNA Fingerprinting of Southern mule deer (Odocoileus hemionus fu

Capture Data and SNP Genotypes to Evaluate Subspecies Range Boundaries of the Bell’s vireo (Vireo bellii pusillus and V. b. arizonae) (2010-2022)

Genetic samples in the form of a small blood sample were collected from 263 Bell's vireos (Vireo bellii) in drainages throughout southern and central California, Arizona, southern Nevada, and southwestern Utah. We used population genomic techniques to delineate the range limit between the Least Bell's Vireo (V. b. pusillus) and its conspecific geographical neighbor, the Arizona Bell's Vireo (V. b

San Francisco Gartersnake Fecundity Data from San Mateo County, California Collected from 2019-2022

Adult female San Francisco gartersnakes (Thamnophis sirtalis tetrataenia) were captured and examined using an ultrasound device to determine if they were gravid and count the number of embryos in those that were. Morphological data including length and mass were collected for each snake, along with the date of capture and a study site identifier. These data support the following publication: Rose

Demographic Parameter Estimates for San Francisco Gartersnakes (Thamnophis sirtalis tetrataenia) for Fitting an Integral Projection Model

A study comparing reintroduction scenarios for the San Francisco gartersnake (Thamnophis sirtalis tetrataenia), an endangered subspecies native to San Mateo County and Santa Cruz County in northern California. Models for snake survival, growth, fecundity, and reproductive status were used to construct a demographic population model. Data are posterior distributions for demographic parameters from

Assessment of Giant Sequoia Mortality and Regeneration within Burned Groves in Sequoia and Kings Canyon National Parks (ver. 2.0, January 2024)

Provided are data containing condition assessments on individual giant sequoia (Sequoiadendron giganteum; SEGI) stems and post-fire regeneration counts within Board Camp, Suwanee, New Oriole Lake, and a subset of Redwood Mountain groves of Sequoia and Kings Canyon national parks, respectively. Stem data contain condition-related attributes (e.g., spatial location, diameter breast height, status -

Egg Mass Counts from Foothill Yellow-Legged Frogs (Rana boylii) in California from 1992-2021

We compiled time series of egg mass counts (an index of adult female abundance) from Rana boylii populations in 36 focal streams and fit a Multiple Population Viability Analysis (MPVA) model to quantify how streamflow metrics, stream temperature, and surrounding land cover affect population growth. In addition, data on streamflow, stream temperature, and surrounding land cover for each stream were

Survey Results for Temblor Legless Lizards (Anniella alexanderae) in the San Joaquin Valley of California, 2022 and 2023

Locations of sites at which U.S. Geological Survey (USGS) biologists surveyed for Temblor legless lizards (Anniella alexanderae) in 2022 and 2023 and the results of those surveys. At the time of the species description, little was known about the distribution of the Temblor legless lizard beyond a few localities. Surveys were designed to gather information on the distribution of Temblor legless li

Data to Support Hierarchical Models and Decision Support Maps to Guide Management of Subsidized Avian Predator Densities

We combined approximately 28,000 raven point count surveys with data from more than 900 sage-grouse nests between 2009 and 2019 within the Great Basin, USA. We modeled variation in raven density using a Bayesian hierarchical distance sampling approach with environmental covariates on detection and abundance. Concurrently, we modeled sage-grouse nest survival using a hierarchical frailty model as a

Greater Sage-Grouse Adult and Nest Observations Before and After Wildfire in Northwest Nevada (2008-2019)

Wildfire events are becoming more frequent and severe on a global scale. Rising temperatures, prolonged drought, and the presence of pyrophytic invasive grasses are contributing to the degradation of native vegetation communities. Within the Great Basin region of the Western United States, increasing wildfire frequency is transforming the ecosystem toward a higher degree of homogeneity, one domina

Nest Attendance, Incubation Constancy, and Onset of Incubation in Dabbling Ducks

This dataset includes daily nest attendance (proportion of time females spent at the nest), incubation constancy (proportion of time females maintained their nests at nest-specific incubation temperatures), nest temperature variation, and the duration of individual incubation bouts for three species of dabbling ducks (mallard, gadwall, and cinnamon teal) nesting in Suisun Marsh, California during

Stem and Needle Growth for Whitebark Pine in the Sierra Nevada

These data represent stem growth, needle length growth, and carbon stable isotope ratios from whitebark pine at 27 sites in the Sierra Nevada of California. Values for stem growth were derived from increment cores, processed following standard methods. Needle characteristics were captured for individual trees across all years needles were present on the internodes. Needle length was measured in th