Publications

In Chapter 1, we report on development and application of an integrated population model (IPM) for the natural-origin fall Chinook salmon population upstream of Lower Granite Dam. This year’s efforts represent the third update to the model. Initial efforts focused on generating juvenile and adult abundance estimates, with estimates of uncertainty, for informing the life-cycle model and...

Recovery of endangered salmon species in the Central Valley of California amidst prolonged drought and climate change necessitates innovative water management actions that balance species recovery and California's water demands. We describe an individual-based ecological particle tracking model (ECO-PTM) that can be used to assess the efficacy of proposed actions. Based on a random walk...

ObjectiveThe primary objective of this study was to determine the effects of temperature on viral erythrocytic necrosis (VEN) progression under controlled conditions. Secondarily, this study was intended to evaluate the combined effects of temperature and VEN on the Pacific Herring Clupea palasii transcriptome.MethodsThe effects of temperature on VEN progression were assessed by...

Imaging sonar was used to assess the influence of a fish guidance net, installed at the entrances to the selective water withdrawal (SWW) intake structure, in the forebay of Round Butte Dam, Oregon, on behavior, abundance, and timing of fish during the spring of 2022. The purposes of the SWW are (1) to direct surface currents in the forebay to attract and collect downriver migrating...

We assessed habitat suitability for salmonids across selected tributaries upstream from three hydroelectric dams on the upper Skagit River in Whatcom County, northern Washington. We used NetMap, a commercial toolset within the ArcMap geographic information system (GIS), to analyze stream attributes based upon a synthetic stream channel network derived from digital elevation models. The...

Smallmouth bass populations have expanded far beyond their native range and these predatory fish present a pervasive threat to native aquatic species throughout North America. In the western United States, smallmouth bass are now present in river and reservoir habitats where Pacific salmon are found and are considered a potential threat to salmon recovery in many locations. We conducted...

Efforts to ameliorate negative effects of diversion dams on aquatic species of concern are important in rivers where water withdrawal supports agricultural economies and are likely to become increasingly important with impending climate change. A multiyear study was conducted to evaluate the survival consequences of diversion dam passage for juvenile Chinook Salmon (Oncorhynchus...

Pacific herring (Clupea pallasii), a cornerstone of marine food webs, generally spawn on marine macroalgae in shallow nearshore areas that are disproportionately at risk from oil spills. Herring embryos are also highly susceptible to toxicity from chemicals leaching from oil stranded in intertidal and subtidal zones. The water-soluble components of crude oil trigger an adverse outcome...

The United States (U.S.) has over 90,000 dams listed in the National Inventory of Dams that provide vital infrastructure to support water management for municipal and industrial uses including irrigation, hydropower, flood control, navigation, recreation, and habitat, among other uses (NID 2023). The Bureau of Reclamation (Reclamation) and U.S. Army Corps of Engineers (USACE) operate and...

Improving rapid detection methods for pathogens is important for research as we collectively aim to improve the health of ecosystems globally. In the northern hemisphere, the success of salmon (Oncorhynchus spp.) populations is vitally important to the larger marine, aquatic, and terrestrial ecosystems they inhabit. This has led to managers cultivating salmon in hatcheries and...

Water clarity, defined in this study using measurements of the downwelling diffuse light attenuation coefficient (Kd) and turbidity, is an important indicator of lake trophic status and ecosystem health. We used in-situ measurements to evaluate existing semi-analytical models for Kd and turbidity, developed a regional turbidity model based on spectral shape, and evaluated the spatial and...

Large-scale dam removals provide opportunities to restore river function in the long-term and are massive disturbances to riverine ecosystems in the short-term. The removal of two dams on the Elwha River (WA, USA) between 2011 and 2014 was the largest dam removal project to be completed by that time and has since resulted in major changes to channel dynamics, river substrates, in-stream...