Publications

We present a case study using trapping data and species accumulation theory to assess the sampling effort needed to detect species that are rare in habitats sampled as part of the management of invasive European green crab Carcinus maenas on the coast of Washington State and Salish Sea shorelines, such as is desired for early detection of invasive species. In response to detections of...

Infectious hematopoietic necrosis (IHN) is a disease of salmonid fish that is caused by the IHN virus (IHNV), which can cause substantial mortality and economic losses in rainbow trout aquaculture and fisheries enhancement hatchery programs. In a previous study on a commercial rainbow trout breeding line that has undergone selection, we found that genetic resistance to IHNV is controlled...

The alewife (Alosa pseudoharengus) is an anadromous herring that inhabits waters of northeastern North America. This prey species is a critical forage for piscivorous birds, mammals, and fishes in estuarine and oceanic ecosystems. During a discovery project tailored to identify potentially emerging pathogens of this species, we obtained the full genome of a novel hepadnavirus (ApHBV)...

The U.S. Geological Survey (USGS) delivers high-quality data, technologies, and decision-support tools to help managers both reduce existing populations and control the spread of dreissenid mussels. The USGS researches ecology, biology, risk assessment, and early detection and rapid response methods; provides decision support; and develops and tests control measures.

Benthic invertebrates play vital roles in estuarine ecosystems, but like other taxa they have been excluded from former marshlands by diking and land use conversion. Dike removal is one way of restoring marsh, but the response of benthic invertebrates has been little studied. Also understudied is variation in benthic invertebrate communities across entire deltas, particularly in the...

The U.S. Army Corps of Engineers American River Watershed Common Features project (ACRF) seeks to reduce flood risk for the City of Sacramento, California, and surrounding areas. The project includes levee-remediation measures to address seepage, stability, erosion, and height concerns as well as the widening of the Sacramento Weir and Bypass. The project reach is in the lower extent of...

Infectious hematopoietic necrosis virus (IHNV) and viral hemorrhagic septicemia virus (VHSV) are rhabdoviruses in two different species belonging to the Novirhabdovirus genus. IHNV has a narrow host range restricted to trout and salmon species, and viruses in the M genogroup of IHNV have high virulence in rainbow trout (Oncorhynchus mykiss). In contrast, the VHSV genotype IVb that...

Introducing anadromous fish upstream of migration barriers has frequently been proposed as a conservation strategy, but existing conditions and future changes to the ecosystems above barriers such as invasive species, climate change, and varying water operations influence the capacity to support such introductions. In the Upper Skagit River, Washington, USA, introduction of anadromous...

The tire rubber-derived ozonation product of N-(1,3-dimethylbutyl)-N'-phenyl-p-phenylenediamine (6PPD), N-(1,3-dimethylbutyl)-N'-phenyl-p-phenylenediamine-quinone (6PPD-Q), was recently discovered to cause acute mortality in Coho Salmon (Oncorhynchus kisutch). para-Phenylenediamines (PPDs) with variable side chains distinct from 6PPD have been identified as potential replacement...

Atlantic menhaden are a highly migratory marine species in the Eastern United States that suffer from seasonal chronic mortality. Affected fish show neurologic signs referred to as spinning disease, including circling at the surface and erratic corkscrew swimming before death. We investigated three similar menhaden mortality events consistent with spinning disease in coastal New Jersey...

Organisms naturalized outside their native range can reveal new life history patterns in new environments. Here, we compare life history patterns of American shad, Alosa sapidissima, from five rivers along the U.S. Pacific coast (introduced range) with contemporary data from the Atlantic coast source populations. The Pacific coast fish grew slower, matured at a younger age, and were less...

Predation can play an important role in structuring ecological communities, and predator–prey dynamics can be altered following the introduction of new species. An unauthorized introduction of redside shiner (Richardsonius balteatus) into reservoirs in the Upper Skagit River, Washington, USA created concern that a consequent shift in predator–prey dynamics in the reservoirs could reduce