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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42712

Does the virus cross the road? Viral phylogeographic patterns among bobcat populations reflect a history of urban development Does the virus cross the road? Viral phylogeographic patterns among bobcat populations reflect a history of urban development

Urban development has major impacts on connectivity among wildlife populations and is thus likely an important factor shaping pathogen transmission in wildlife. However, most investigations of wildlife diseases in urban areas focus on prevalence and infection risk rather than potential effects of urbanization on transmission itself. Feline immunodeficiency virus (FIV) is a directly...
Authors
Christopher P. Kozakiewicz, Christopher P. Burridge, W. Chris Funk, Meggan E. Craft, Kevin R. Crooks, Robert N. Fisher, Nicholas M. Fountain-Jones, Megan K. Jennings, Simona J Kraberger, Justin S. Lee, Lisa M. Lyren, Seth P.D. Riley, Laurel E K Serieys, Sue VandeWoude, Scott Carver

Spatiotemporal patterns of mineral and organic matter deposition across two San Francisco Bay-Delta tidal marshes Spatiotemporal patterns of mineral and organic matter deposition across two San Francisco Bay-Delta tidal marshes

Sediment deposition in tidal wetlands is a critical process that determines whether vertical growth will keep pace with sea-level rise. However, more information is needed on how sediment deposition varies spatially and temporally across wetlands, including the effects of elevation, tidal inundation, vegetation, and weather. We investigated variation in sediment deposition due to season...
Authors
Kevin Buffington, Christopher N. Janousek, Karen M. Thorne, Bruce D. Dugger

Catalogue of polar bear (Ursus maritimus) maternal den locations in the Beaufort and Chukchi Seas and nearby areas, 1910–2018 Catalogue of polar bear (Ursus maritimus) maternal den locations in the Beaufort and Chukchi Seas and nearby areas, 1910–2018

This report presents data on the approximate locations and methods of discovery of 530 polar bear (Ursus maritimus) maternal dens observed in the Beaufort and Chukchi Seas and neighboring areas from 1910 to 2018, and archived partly by the U.S. Geological Survey, Alaska Science Center, and partly by the U.S. Fish and Wildlife Service, Marine Mammals Management, in Anchorage, Alaska. A...
Authors
George M. Durner, Steven C. Amstrup, Todd C. Atwood, David C. Douglas, Anthony S. Fischbach, Jay W. Olson, Karyn D. Rode, Ryan H. Wilson

How "simple" methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish How "simple" methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish

Reduced representation (RRL) sequencing approaches (e.g., RADSeq, genotyping by sequencing) require decisions about how much to invest in genome coverage and sequencing depth, as well as choices of values for adjustable bioinformatics parameters. To empirically explore the importance of these “simple” methodological decisions, we generated two independent sequencing libraries for the...
Authors
Carly F. Graham, Douglas R. Boreham, Richard G. Manzon, Wendylee Stott, Joanna Y. Wilson, Christopher M. Somers

Herpetofauna occupancy and community composition along a tidal swamp salinity gradient Herpetofauna occupancy and community composition along a tidal swamp salinity gradient

Occupancy patterns of herpetofauna in most tidal freshwater swamps are unknown. Tidal freshwater swamps currently face multiple threats, including salinization, which can influence their associated plant and animal communities. The impacts of salinization to herpetofauna communities in tidal freshwater swamps have not been assessed. To improve predictions regarding these herpetofauna, we...
Authors
Sidney T Godfrey, J. Hardin Waddle, Robert F Baldwin, William H. Conner, William C Bridges, Jamie A. Duberstein

Uptake, metabolism, and elimination of fungicides from coated wheat seeds in Japanese quail (Coturnix japonica) Uptake, metabolism, and elimination of fungicides from coated wheat seeds in Japanese quail (Coturnix japonica)

Pesticides coated to the seed surface potentially pose an ecological risk to granivorous birds that consume incompletely buried or spilled seeds. To assess the toxicokinetics of seeds treated with current-use fungicides, Japanese quail (Coturnix japonica) were orally dosed with commercially coated wheat seeds. Quail were exposed to metalaxyl, tebuconazole, and fludioxonil at either a low...
Authors
Michael S. Gross, Thomas G. Bean, Michelle L. Hladik, Barnett A. Rattner, Kathryn Kuivila

Tidal wetland gross primary production across the continental United States, 2000–2019 Tidal wetland gross primary production across the continental United States, 2000–2019

We mapped tidal wetland gross primary production (GPP) with unprecedented detail for multiple wetland types across the continental United States (CONUS) at 16‐day intervals for the years 2000–2019. To accomplish this task, we developed the spatially explicit Blue Carbon (BC) model, which combined tidal wetland cover and field‐based eddy covariance tower data into a single Bayesian...
Authors
R.A. Feagin, I. Forbrich, T. P. Huff, J.G. Barr, J. Ruiz-Plancarte, J.D. Fuentes, R.G. Najjar, R. Vargas, A. Vazquez Lule, L. Windham-Myers, Kevin D. Kroeger, E. J. Ward, G. W. Moore, M. Leclerc, K. W. Krauss, C.L. Stagg, M. Alber, S. H. Knox, K. V. R. Schafer, T.S. Bianchi, J. A. Hutchings, H. Nahrawi, A. Noormets, B. Mitra, A. Jaimes, A.L. Hinson, Brian A. Bergamaschi, J.S. King, G. Miao

Evaluating contributions of recent tracking-based animal movement ecology to conservation management Evaluating contributions of recent tracking-based animal movement ecology to conservation management

The use of animal-born sensors for location-based tracking and bio-logging in terrestrial systems has expanded dramatically in the past 10 years. This rapid expansion has generated new data on how animals interact with and respond to variation in their environment, resulting in important ecological, physiological, and evolutionary insights. Although understanding the finer details of...
Authors
Todd E. Katzner, Raphael Arlettaz

The clock keeps ticking: Circadian rhythms of free-ranging polar bears The clock keeps ticking: Circadian rhythms of free-ranging polar bears

Life in the Arctic presents organisms with multiple challenges, including extreme photic conditions, cold temperatures, and annual loss and daily movement of sea ice. Polar bears (Ursus maritimus) evolved under these unique conditions, where they rely on ice to hunt their main prey, seals. However, very little is known about the dynamics of their daily and seasonal activity patterns. For...
Authors
Jasmine V. Ware, Karyn D. Rode, Charles T. Robbins, T. Leise, C.R. Weil, Heiko T. Jansen

Website usability differences between males and females: An eye-tracking evaluation of a climate decision support system Website usability differences between males and females: An eye-tracking evaluation of a climate decision support system

Decision support systems, which are collections of related information located in a central place, can be used as platforms from which climate information can be shared with decision-makers. In this study, a web-based climate decision support system (DSS) for foresters in the Southeast United States was evaluated using eye-tracking technology. The initial study design was exploratory and...
Authors
Lindsay C. Mauldin, Karen McNeal, Heather D Aldridge, Corey Davis, Ryan Boyles, Rachel M. Atkins

The historical context of contemporary climatic adaptation: A case study in the climatically dynamic and environmentally complex southwestern United States The historical context of contemporary climatic adaptation: A case study in the climatically dynamic and environmentally complex southwestern United States

The process of adaptation can be highly dependent upon historical and contemporary factors, especially in environmentally and topographically complex regions affected by Pleistocene glaciations. Here, we investigate Hilaria jamesii (Poaceae), a dryland C4 graminoid, to test how patterns of adaptive genetic variation are linked to its glacial and post‐glacial history. We show that the...
Authors
Robert Massatti, L. Lacey Knowles

Final Alabama Barrier Island restoration assessment report, appendix A: Data management plan Final Alabama Barrier Island restoration assessment report, appendix A: Data management plan

The Alabama Barrier Island Restoration Assessment project focused exclusively on Dauphin Island, a significant barrier island along the northern Gulf of Mexico. This restoration feasibility study effort required data collection and analysis of many data types (e.g., hydro, sediment, currents, etc.) through the project’s life cycle to assess restoration measures and their effects on the
Authors
Christina B. Hunnicutt, Craig Conzelmann
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