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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. 

 

**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 5026

DeepFaune New England: A species classification model for trail camera images in northeastern North America DeepFaune New England: A species classification model for trail camera images in northeastern North America

The DeepFaune New England model classifies wildlife species in trail camera images, identifying 24 taxa from northeastern North America with high (97%) accuracy. The model was adapted from the DeepFaune model for identifying European wildlife, demonstrating the practicality of transfer learning across continents. The majority of training data is openly licensed, and the model itself is...
Authors
Laurence A. Clarfeld, Katherine D. Gieder, Angela K. Fuller, Zhongqi Miao, Alexej P.K. Sirén, Shevenell M. Webb, Toni Lyn Morelli, Jillian R. Kilborn, Catherine B. Callahan, Leighlan S. Prout, Rachel Cliché, Riley K. Patry, Christopher Bernier, Susan Staats, Therese M. Donovan

A hidden heelsplitter: Distribution of an undescribed endemic freshwater mussel in the Barrens Plateau A hidden heelsplitter: Distribution of an undescribed endemic freshwater mussel in the Barrens Plateau

Malacologists generally acknowledge that the Alasminota holstonia (Tennessee Heelsplitter) populations in the Caney Fork, Elk, and Duck river drainages in the Barrens Plateau region of middle Tennessee likely represent a closely related, but distinct, species, collectively referred to as Alasminota sp. (Barrens Heelsplitter). Recent surveys indicate that the species persists in at least...
Authors
Kristin I. Womble, Amanda E. Rosenberger, Andrew R. Henderson

Satellite tracking supports hypotheses of breeding allochrony and allopatry in the Endangered Pterodroma hasitata (Black-capped Petrel, Diablotin) Satellite tracking supports hypotheses of breeding allochrony and allopatry in the Endangered Pterodroma hasitata (Black-capped Petrel, Diablotin)

Pterodroma hasitata, the Black-capped Petrel (locally known as Diablotin), is the only extant Pterodroma petrel nesting in the Caribbean. The species is listed as globally Endangered by the IUCN and was recently listed as endangered under the U.S. Endangered Species Act. Pterodroma hasitata show a phenotypic gradient, ranging from a darker, smaller form to a paler, heavier form, that is...
Authors
Yvan G. Satgé, J. Brian Patteson, Bradford S. Keitt, Chris P. Gaskin, Patrick G.R. Jodice

Too hot for comfort: Elevated temperatures influence gene expression and exceed thermal tolerance of bigmouth shiners, Ericymba dorsalis Too hot for comfort: Elevated temperatures influence gene expression and exceed thermal tolerance of bigmouth shiners, Ericymba dorsalis

Environmental and associated ecosystem change may affect the persistence of fish species based on their ability to adapt to changing conditions, including decreasing flows and rising water temperatures. Exceeding the thermal tolerances of stream fish will likely result in a loss of ability to maintain metabolic processes. We evaluated the critical thermal maximum (CTmax) of bigmouth...
Authors
Ella K. Humphrey, Jonathan J. Spurgeon, Lizabeth Bowen, Robert E. Wilson, Shannon C. Waters-Dynes, Braxton M. Newkirk, Sarah A. Sonsthagen

Predicting secretive species distribution using Bayesian networks with and without expert elicitation: A case study incorporating double-blind peer review Predicting secretive species distribution using Bayesian networks with and without expert elicitation: A case study incorporating double-blind peer review

1. Species that are secretive, imperilled and consequently data deficient often re-quire conservation action despite limited available information. In such scenarios, Bayesian networks (BNs) offer a versatile and intuitive approach for utilizing various information sources, including literature reviews, community science data sets and expert knowledge. Although it has been suggested that...
Authors
Dustin E. Brewer, Elisabeth B. Webb, Anne E. Mini, S. Keith McKnight

Freshwater turtle assemblages and densities in agricultural ditches and aquaculture ponds of eastern Arkansas Freshwater turtle assemblages and densities in agricultural ditches and aquaculture ponds of eastern Arkansas

The Mississippi Alluvial Plain (MAP) of Arkansas is a landscape where many wetlands have been altered for use as aquaculture ponds or agricultural ditches. Commercial harvest of freshwater turtles within the MAP is not restricted or limited, with reported harvest numbers for 2019 alone exceeding 4000 for spiny softshell turtles (Apalone spinifera) and 39,000 for red-eared sliders...
Authors
Andrhea D. Massey, John D. Willson, Brett Alexander DeGregorio

Application of fin tissue for nonlethal stable isotope analysis of small-bodied fishes Application of fin tissue for nonlethal stable isotope analysis of small-bodied fishes

Stable isotopes are commonly used to characterize food web structure and resource use by aquatic organisms. White muscle is generally preferred for stable isotope analysis of fishes. However, obtaining white muscle tissue typically requires lethal take or invasive sampling techniques, which are undesirable for small-bodied species or those of conservation concern. We assessed the use of...
Authors
Wade M. Wilson, Jane S. Rogosch, Scott F. Collins, Bart W. Durham, Kevin B. Mayes, Sarah M. Robertson

Control of a dominant predator influences the occurrence of a mesocarnivore of conservation concern Control of a dominant predator influences the occurrence of a mesocarnivore of conservation concern

Context Interspecific interactions shape ecological communities, influence community dynamics, and drive co-evolution. Despite their ecological significance, predation and competition remain understudied in plains spotted skunks (Spilogale interrupta), a species of conservation concern. Clarifying how predator management influences their occurrence is crucial for effective conservation...
Authors
Kara M. White, Amanda E. Cheeseman, Joshua D. Stafford, Robert Charles Lonsinger

Year-round daytime pCO2 undersaturation in an instream series of urban reservoirs with a history of harmful algal blooms Year-round daytime pCO2 undersaturation in an instream series of urban reservoirs with a history of harmful algal blooms

Daytime water quality was determined monthly over two years in an instream series of four urban reservoirs with recurring blooms of Prymnesium parvum—a cool-season toxigenic species. Temperature, pH, and laboratory-measured total alkalinity were used to estimate pCO2. System-wide, pCO2 was negatively associated with dissolved oxygen. Chlorophyll-a, phycocyanin (cyanobacterial pigment)...
Authors
Reynaldo Patino, Samantha Lehker

An approach to urban waterway assessment using holistic values and reciprocity An approach to urban waterway assessment using holistic values and reciprocity

Current aquatic ecosystem assessment methods and tools often focus on physical, chemical, and biological indicators of ecosystem health. This approach to ecosystem assessment is not always straightforward to execute in urban environments and ignores potential connectivity between social and environmental outcomes. During a workshop at the Symposium on Urbanization and Stream Ecology in...
Authors
Mateo Scoggins, Isabelle C. Barrett, Belinda I. Margetts, Eugenia Martí, Brian M. Murphy, Allison H. Roy, Ruth I. Shear, Sergia S. Sabat-Bonilla, Natalie A. Griffiths, Vinitha Nanjappa, Kate Mussett, Kasey M. Stirling, Susan Chiblow, Shayenna Nolan

Expression and mechanisms of behavioral plasticity in large mammals Expression and mechanisms of behavioral plasticity in large mammals

Behavioral plasticity, the alteration of behavior in response to stimuli, is becoming increasingly important in the context of human-induced rapid environmental change. Theoretical and empirical studies suggest that the expression and magnitude of behavioral plasticity are likely facilitated or constrained primarily by two factors: environmental variation and endogenous traits such as...
Authors
Rebecca R. Thomas-Kuzilik, Justine A. Becker, Jeffrey L. Beck, Justin G. Clapp, Alyson B. Courtemanch, Gary L. Fralick, Chris Geremia, L. Embere Hall, Matthew Kauffman, Blake Lowrey, Matthew C. Metz, Hollie M. Miyasaki, Kevin L. Monteith, Anna C. Ortega, Hall Sawyer, Douglas W. Smith, Erin E. Stahler, Daniel R. Stahler, Tana L. Verzuh, Jerod A. Merkle

Museum records provide unique information about the distribution of the Yellow Lampmussel Lampsilis cariosa (Unionidae) Museum records provide unique information about the distribution of the Yellow Lampmussel Lampsilis cariosa (Unionidae)

Natural history museum records may provide unique information on the distribution of species that can supplement survey data collected by resource managers. However, there can be challenges to using museum data for analyses, such as spurious geographic information, misidentifications, and incorrect labeling. Museum records have been centralized by open-source repositories with flags for...
Authors
Jillian Fedarick, Christina Amy Murphy, Sydne Record, Allison H. Roy
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