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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 5011

A mosaic-based approach is needed to conserve biodiversity in disturbed freshwater ecosystems A mosaic-based approach is needed to conserve biodiversity in disturbed freshwater ecosystems

Conserving native biodiversity in the face of human‐ and climate‐related impacts is a challenging and globally important ecological problem that requires an understanding of spatially connected, organismal‐habitat relationships. Globally, a suite of disturbances (e.g., agriculture, urbanization, climate change) degrades habitats and threatens biodiversity. A mosaic approach (in which...
Authors
Sean M. Hitchman, Martha E. Mather, Joseph M. Smith, Jane S. Fencl

The role of density-dependent and –independent processes in spawning habitat selection by salmon in an Arctic riverscape The role of density-dependent and –independent processes in spawning habitat selection by salmon in an Arctic riverscape

Density-dependent (DD) and density-independent (DI) habitat selection is strongly linked to a species’ evolutionary history. Determining the relative importance of each is necessary because declining populations are not always the result of altered DI mechanisms but can often be the result of DD via a reduced carrying capacity. We developed spatially and temporally explicit models...
Authors
Brock M. Huntsman, Jeffrey A. Falke, James W. Savereide, Katrina E. Bennett

Editorial Editorial

No abstract available.
Authors
Abigail Lynch, R. G. Asch, William W. L. Cheung, Craig P. Paukert, Ryan R. Rykaczewski, Warwick H. H. Sauer

Occupancy and abundance of Eleutherodactylus frogs in coffee plantations in Puerto Rico Occupancy and abundance of Eleutherodactylus frogs in coffee plantations in Puerto Rico

Shaded coffee plantations are of conservation value for many taxa, particularly for resident avifauna in the face of extensive landscape changes. Yet, little is known about the value of coffee plantations for amphibians because there are scant demographic data to index their value among species with different habitat preferences. We estimated the probability of occupancy of three frog...
Authors
Kelen D. Monroe, Jaime A. Collazo, Krishna Pacifici, Brian J. Reich, Alberto R. Puente-Rolon, Adam J. Terando

Sources, composition and spatial distribution of marine debris along the Mediterranean coast of Israel Sources, composition and spatial distribution of marine debris along the Mediterranean coast of Israel

Marine debris (litter) is a complex problem that affects human activities and the marine environment worldwide. The Clean Coast Program in Israel has had some success in keeping most of the coasts clean most of the time, but without understanding the mechanisms of accumulation of marine debris on the coasts of Israel. In 2012, we initiated a study to characterize the types of marine...
Authors
Galia Pasternak, Dov Zviely, Christine Ribic, Asaf Ariel, Ehud Spanier

Designing a global assessment of climate change on inland fishes and fisheries: knowns and needs Designing a global assessment of climate change on inland fishes and fisheries: knowns and needs

To date, there are few comprehensive assessments of how climate change affects inland finfish, fisheries, and aquaculture at a global scale, but one is necessary to identify research needs and commonalities across regions and to help guide decision making and funding priorities. Broadly, the consequences of climate change on inland fishes will impact global food security, the livelihoods...
Authors
Craig P. Paukert, Abigail J. Lynch, T. Douglas Beard, Yushun Chen, Steven J. Cooke, Michael S. Cooperman, Ian G. Cowx, Dana M. Infante, Lilian Ibengwe, Bonnie Myers, Phu Hoa Nguyen, Ian J. Winfield

Functional visual sensitivity to ultraviolet wavelengths in the Pileated Woodpecker (Dryocopus pileatus), and its influence on foraging substrate selection Functional visual sensitivity to ultraviolet wavelengths in the Pileated Woodpecker (Dryocopus pileatus), and its influence on foraging substrate selection

Most diurnal birds are presumed visually sensitive to near ultraviolet (UV) wavelengths, however, controlled behavioral studies investigating UV sensitivity remain few. Although woodpeckers are important as primary cavity excavators and nuisance animals, published work on their visual systems is limited. We developed a novel foraging-based behavioral assay designed to test UV sensitivity...
Authors
Sean T. O’Daniels, Dylan C. Kesler, Jeanne D. Mihail, Elisabeth B. Webb, Scott J. Werner

A dynamic spatio-temporal model for spatial data A dynamic spatio-temporal model for spatial data

Analyzing spatial data often requires modeling dependencies created by a dynamic spatio-temporal data generating process. In many applications, a generalized linear mixed model (GLMM) is used with a random effect to account for spatial dependence and to provide optimal spatial predictions. Location-specific covariates are often included as fixed effects in a GLMM and may be collinear...
Authors
Trevor J. Hefley, Mevin Hooten, Ephraim M. Hanks, Robin Russell, Daniel P. Walsh

Using variance structure to quantify responses to perturbation in fish catches Using variance structure to quantify responses to perturbation in fish catches

We present a case study evaluation of gill-net catches of Walleye Sander vitreus to assess potential effects of large-scale changes in Oneida Lake, New York, including the disruption of trophic interactions by double-crested cormorants Phalacrocorax auritus and invasive dreissenid mussels. We used the empirical long-term gill-net time series and a negative binomial linear mixed model to...
Authors
Tiffany E. Vidal, Brian J. Irwin, Tyler Wagner, Lars G. Rudstam, James R. Jackson, James R. Bence

Response of fish population dynamics to mitigation activities in a large regulated river Response of fish population dynamics to mitigation activities in a large regulated river

Extensive water development in large rivers has precipitated many negative ecological effects on native fish populations. Mitigation for such development often focuses on restoring biological integrity through remediation of the physical and chemical properties of regulated rivers. However, evaluating and defining the success of those programs can be difficult. We modeled the influence...
Authors
Carson J. Watkins, Tyler J. Ross, Michael C. Quist, Ryan S. Hardy

White-cheeked Pintail duckling and brood survival across wetland types at Humacao Nature Reserve, Puerto Rico White-cheeked Pintail duckling and brood survival across wetland types at Humacao Nature Reserve, Puerto Rico

Duckling survival is an important influence on recruitment in several North American Anas species. White-cheeked Pintail (Anas bahamensis) breeding in Puerto Rico encounter a variety of wetland types that may influence duckling survival. We monitored fates of 92 radio-tagged ducklings in 31 broods in 5 wetland habitat types at Humacao Nature Reserve in southeastern Puerto Rico from 2000...
Authors
J. Brian Davis, Francisco Vilella, Joseph D. Lancaster, Marisel Lopez-Flores, Richard M. Kaminski, Jose A. Cruz-Burgos

Effect of substrate size on sympatric sand darter benthic habitat preferences Effect of substrate size on sympatric sand darter benthic habitat preferences

The western sand darter, Ammocrypta clara, and the eastern sand darter, A. pellucida, are sand-dwelling fishes that have undergone range-wide population declines, presumably owing to habitat loss. Habitat use studies have been conducted for the eastern sand darter, but literature on the western sand darter remains sparse. To evaluate substrate selection and preference, western and...
Authors
Patricia A. Thompson, Stuart A. Welsh, Austin A. Rizzo, Dustin M. Smith
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