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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42878

Identification of novel hepaciviruses and Sylvilagus-associated viruses via metatranscriptomics in North American lagomorphs Identification of novel hepaciviruses and Sylvilagus-associated viruses via metatranscriptomics in North American lagomorphs

Cottontails (Sylvilagus spp.) and jackrabbits (Lepus spp.) within the Leporidae family are native to North America and are found in a wide range of habitats, including deserts, forests, and grasslands. Although there is a growing body of research describing the arrival of the highly virulent rabbit haemorrhagic disease virus 2 (RHDV2, GI.2) on this continent, and its impact on native...
Authors
Maria Jenckel, Wei-Shan Chang, Emily A. Wright, Robert D. Bradley, Robert J. Dusek, Hon S. Ip, Robyn Hall, Ina Smith, Tanja Strive

Expansion of aquatic and marsh area into once forest and agricultural area reflects changing hydrological conditions along the Upper Mississippi and Illinois rivers (1989-2020) Expansion of aquatic and marsh area into once forest and agricultural area reflects changing hydrological conditions along the Upper Mississippi and Illinois rivers (1989-2020)

We examined 30-year trends in the abundance and distribution of aquatic and floodplain vegetation, as well as human land uses in five study reaches of the Upper Mississippi River and one reach of the Illinois River using aerial photography collected in years 1989, 2000, 2010, and 2020. Permanently inundated area increased in all study reaches over the 30-year period. Increases ranged...
Authors
Nathan R. De Jager, Jason J. Rohweder

Living with wildfire in West Vail, Eagle County, Colorado: 2022 data report Living with wildfire in West Vail, Eagle County, Colorado: 2022 data report

Community wildfire readiness includes homeowner wildfire risk mitigation and wildfire evacuation preparedness. This report presents results from a household survey distributed to 725 households in West Vail, Colorado in 2022. Results indicate that West Vail survey respondents may not fully understand the risk of damage or property loss due to a wildfire and may benefit from further...
Authors
Colleen Donovan, Patricia A. Champ, Suzanne Wittenbrink, Paul Cada, Hannah Brenkert-Smith, James R. Meldrum, Christopher M. Barth, Carolyn Wagner, Chiara Forrester, Julia Goolsby

Living with wildfire in Chelan County Fire District #3, Chelan County, Washington: 2022 data report Living with wildfire in Chelan County Fire District #3, Chelan County, Washington: 2022 data report

Community wildfire readiness includes homeowner wildfire risk mitigation and wildfire evacuation preparedness. In 2021 and 2022, the Wildfire Research (WiRē) Center partnered with Chelan County Fire District #3 (CCFD #3) to learn how CCFD #3 can effectively engage with residents about preparing for a wildfire event and mitigating wildfire risk around the home. The CCFD #3 residents were...
Authors
Suzanne Wittenbrink, Colleen Donovan, Julia Goolsby, Patricia A. Champ, Dave Nalle, Hannah Brenkert-Smith, James R. Meldrum, Christopher M. Barth, Carolyn Wagner, Chiara Forrester

Angler dynamics in the St. Clair-Detroit River System after decades of change Angler dynamics in the St. Clair-Detroit River System after decades of change

Habitat and water quality were historically degraded within the St. Clair-Detroit River System (SCDRS). Beginning in 2004, extensive habitat restoration projects were implemented remediating losses of fish spawning beds and shoreline areas. Monitoring of post-restoration activities documented recovering fish populations; however, angler response remains unknown. Extensive creel surveys...
Authors
Dana Castle, T. Galarowitz, Edward Roseman, T. Claramunt, J. Chiotti, R. Dvorak

Lake Ontario spring prey fish bottom trawl survey and Alewife assessment, 2025 Lake Ontario spring prey fish bottom trawl survey and Alewife assessment, 2025

The multi-agency Lake Ontario spring prey fish survey quantifies changes in pelagic prey fish populations, in particular Alewife Alosa pseudoharengus, which are the primary prey supporting the lake’s sport fishes. The 2025 survey included 230 trawls in the main lake and embayments and sampled depths from 5.5 to 245 m (15 – 810 ft). The survey captured 504,541 fish from 33 species with a...
Authors
Brian Weidel, Jessica Goretzke, Jeremy P. Holden, Emma Bloomfield, Scott David Stahl, Olivia Margaret Mitchinson, Brian O’Malley, Nicole Lynn Berry, Katie Victoria Anweiler, Amanda Susanne Ackiss

Paralytic shellfish toxins and seabirds: Evaluating sublethal effects, behavioral responses, and ecological implications of saxitoxin ingestion by common murres (Uria aalge) Paralytic shellfish toxins and seabirds: Evaluating sublethal effects, behavioral responses, and ecological implications of saxitoxin ingestion by common murres (Uria aalge)

Paralytic shellfish toxins (PSTs), including saxitoxin (STX) and its congeners, are neurotoxins that can be produced during harmful algal blooms and cause illness or death in humans, fish, seabirds, and marine mammals. Since 2014, multiple large-scale seabird mortality events have occurred in Alaska waters, with STXs detected in some carcasses. To investigate the sublethal behavioral and
Authors
Matthew M. Smith, Robert J. Dusek, Tuula E. Hollmen, Sarah K. Schoen, Caroline R. Van Hemert, Kristen Steinmetzer, Aidan Lee, Jenna Schlenner, Vijay P. Patil, D. Ransom Hardison, David Kulis, Donald M. Anderson, Clark D. Ridge, Sherwood Hall

A molecular specimen bank for contemporary and future study captures landscape-scale biodiversity baselines before Klamath River dam removal A molecular specimen bank for contemporary and future study captures landscape-scale biodiversity baselines before Klamath River dam removal

Global restoration and conservation of freshwater biodiversity are represented in practice by works such as the Klamath River Renewal Project (KRRP), the largest dam removal and river restoration in the United States, which has reconnected 640 river kilometers. With dam removals, many biological outcomes remain understudied due to a lack of pre-impact data and complex ecosystem recovery...
Authors
Dylan J. Keel, Katie Karpenko, Scott M. Blankenship, Gregg Schumer, Oshun O’Rourke, Carl O. Ostberg, Daniel A. Chase, Jeffrey J. Duda

Assessing the potential for evaluation of wildland fire models using remotely sensed data—Summary proceedings from a U.S. Geological Survey workshop in 2024 Assessing the potential for evaluation of wildland fire models using remotely sensed data—Summary proceedings from a U.S. Geological Survey workshop in 2024

On September 19, 2024, the U.S. Geological Survey (USGS) held a virtual workshop titled “Potential for Evaluation of Fire Models with Remote Sensing Data Workshop” to assess the feasibility of using remotely sensed datasets to evaluate next-generation wildland fire behavior models. Remote sensing and fire modelling experts gathered to: (1) assess the suitability of a variety of...
Authors
Sophie R. Bonner, Kurtis Nelson, Peter G. Rinkleff, Chad M. Hoffman, Paul F. Steblein

Pyrethroid insecticides implicated in mass mortality of monarch butterflies at an overwintering site in California Pyrethroid insecticides implicated in mass mortality of monarch butterflies at an overwintering site in California

Since the 1980s, monarch butterfly (Danaus plexippus plexippus) populations across North America have declined by 80–95%. Although several studies have implicated pesticides as a contributing factor to their population declines, our understanding of monarch exposure levels in nature remains limited. In January 2024, a mass mortality event near an overwintering site in Pacific Grove...
Authors
Staci Cibotti, Michelle L. Hladik, Emily May, Emma Pelton, Timothy Bargar, Natalie Johnston, Aimee Code

Catalyzing change: A literature review on the implementation of the Nature Futures Framework Catalyzing change: A literature review on the implementation of the Nature Futures Framework

The Nature Futures Framework (NFF), developed under the Intergovernmental Science–Policy Platform on Biodiversity and Ecosystem Services (IPBES), serves as a catalyst for advancing new scenarios and models focused on biodiversity and ecosystem services within the broader research community. In particular, the framework facilitates the development of scenarios and models that can help...
Authors
Sana Okayasu, Jan J. Kuiper, Ghassen Halouani, HyeJin Kim, Brian W. Miller, America Paz Duran, Vermeer Angelique, Machteld Schoolenberg, Shizuka Hashimoto, Carolyn J. Lundquist

Isotopic niche plasticity of American alligators within the southern Everglades Isotopic niche plasticity of American alligators within the southern Everglades

Hydrologic alterations within the Everglades have degraded American alligator (Alligator mississippiensis) habitat, reduced prey base, and increased physiological stress. Alligator body condition declined across many management areas from 2000 through 2014, prompting us to investigate the relationship between their intraspecific isotopic niche dynamics and body condition. Alligators...
Authors
Mathew Denton, Michael Cherkiss, Frank J. Mazzotti, Laura A. Brandt, Sidney T. Godfrey, Darren Johnson, Kristen Hart
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