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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42768

Three visualization approaches for communicating and exploring PIT tag data Three visualization approaches for communicating and exploring PIT tag data

As the number, size and complexity of ecological datasets has increased, narrative and interactive raw data visualizations have emerged as important tools for exploring and understanding these large datasets. As a demonstration, we developed three visualizations to communicate and explore passive integrated transponder tag data from two long-term field studies. We created three...
Authors
Benjamin H. Letcher, Jeffrey D. Walker, Matthew O'Donnell, Andrew R. Whiteley, Keith Nislow, Jason Coombs

Toxicity assessment of sediments collected upstream and downstream from the White Dam in Clarke County, Georgia Toxicity assessment of sediments collected upstream and downstream from the White Dam in Clarke County, Georgia

The White Dam in Clarke County, Georgia, has been proposed for breaching. Efforts to determine potential risks to downstream biota included assessments of sediment collected in the vicinity of the dam. Sediments collected from sites upstream and downstream from the dam were evaluated for toxicity in 42-day exposures using the freshwater amphipod Hyalella azteca. Endpoints of the study...
Authors
Peter J. Lasier

Warm water temperatures and shifts in seasonality increase trout recruitment but only moderately decrease adult size in western North American tailwaters Warm water temperatures and shifts in seasonality increase trout recruitment but only moderately decrease adult size in western North American tailwaters

Dams throughout western North America have altered thermal regimes in rivers, creating cold, clear “tailwaters” in which trout populations thrive. Ongoing drought in the region has led to highly publicized reductions in reservoir storage and raised concerns about potential reductions in downstream flows. Large changes in riverine thermal regimes may also occur as reservoir water levels...
Authors
Kimberly L. Dibble, Charles B. Yackulic, Theodore A. Kennedy

Columbia River Basin dreissenid mussel monitoring forum workshop Columbia River Basin dreissenid mussel monitoring forum workshop

To address actions identified in the Department of Interior’s “Safeguarding the West” strategy, the Pacific States Marine Fisheries Commission (PSMFC) and US Geological Survey (USGS) convened 43 invasive species coordinators and scientific experts June 5-6, 2018 in Portland, Oregon to assess the status of dreissenid monitoring efforts in the Columbia River Basin (CRB); identify key...
Authors
Lisa DeBruyckere, Timothy D. Counihan, Stephen Phillips

The role of fish in a globally changing food system The role of fish in a globally changing food system

Applied research and adaptive management techniques can assist with the necessary evolution of sustainable food systems to include a stronger emphasis on fish and other aquatic organisms. Fish provide key macro‐ and micronutrients and protein, are low in saturated fat, and have been linked to a wide array of health benefits for the developing fetus, infants, and adults. Diet quality is...
Authors
Abigail J. Lynch, J. Randy MacMillan

Extreme drought alters frequency and reproductive success of floaters in Willow Flycatchers Extreme drought alters frequency and reproductive success of floaters in Willow Flycatchers

Changes in habitat quality, including those caused by extreme events like droughts and floods, could alter costs and benefits of territoriality and thereby the prevalence and reproductive consequences for individuals capable of breeding that do not do so (floaters). We studied floating behavior in a population of Southwestern Willow Flycatchers (Empidonax traillii extimus) in central...
Authors
Tad Theimer, Mark K. Sogge, Suzanne N. Cardinal, Scott L. Durst, Eben H. Paxton

Ichthyophonus in sport-caught groundfishes from southcentral Alaska Ichthyophonus in sport-caught groundfishes from southcentral Alaska

This report of Ichthyophonus in common sport-caught fishes throughout the marine waters of southcentral Alaska represents the first documentation of natural Ichthyophonus infections in lingcod Ophiodon elongates and yelloweye rockfish Sebastes ruberrimus. In addition, the known geographic range of Ichthyophonus in black rockfish S. melanops has been expanded northward to include...
Authors
Bradley P. Harris, Sarah R. Webster, Nathan Wolf, Jacob L. Gregg, Paul Hershberger

Potential impacts of projected climate change on vegetation-management strategies in Hawai‘i Volcanoes National Park Potential impacts of projected climate change on vegetation-management strategies in Hawai‘i Volcanoes National Park

Climate change is expected to alter the seasonal and annual patterns of rainfall and temperature in the Hawaiian Islands. Land managers and other responsible agencies will need to know how plant-species habitats will change over the next century in order to manage these resources effectively. This issue is a major concern for resource managers at Hawai‘i Volcanoes National Park (HAVO)...
Authors
Richard J. Camp, S. Paul Berkowitz, Kevin W. Brink, James D. Jacobi, Rhonda Loh, Jonathan Price, Lucas B. Fortini

Monitoring riparian-vegetation composition and cover along the Colorado River downstream of Glen Canyon Dam, Arizona Monitoring riparian-vegetation composition and cover along the Colorado River downstream of Glen Canyon Dam, Arizona

Vegetation in the riparian zone (the area immediately adjacent to streams, such as stream banks) along the Colorado River downstream of Glen Canyon Dam, Arizona, supports many ecosystem and societal functions. In both Glen Canyon and Grand Canyon, this ecosystem has changed over time in response to flow alterations, invasive species, and recreational use. Riparian-vegetation cover and...
Authors
Emily C. Palmquist, Barbara E. Ralston, Daniel A. Sarr, Taylor C. Johnson

Freshwater mussel survey for the Columbia Dam removal, Paulins Kill, New Jersey Freshwater mussel survey for the Columbia Dam removal, Paulins Kill, New Jersey

Semi-quantitative mussel surveys, conducted by the U.S. Geological Survey and the Delaware Riverkeeper Network in cooperation with The Nature Conservancy, were completed in the vicinity of the Columbia Dam, on the Paulins Kill, New Jersey, in August 2017 in order to document the mussel species composition and relative abundance prior to removal of the dam. Surveys were conducted from the...
Authors
Heather S. Galbraith, Carrie J. Blakeslee, Jeffrey C. Cole, Erik L. Silldorff

Analytical and diagnostic performance of a qPCR assay for Ichthyophonus spp. compared to the tissue culture ‘gold standard’ Analytical and diagnostic performance of a qPCR assay for Ichthyophonus spp. compared to the tissue culture ‘gold standard’

Parasites of the genus Ichthyophonus infect many fish species and have a non-uniform distribution within host tissues. Due in part to this uneven distribution, the comparative sensitivity and accuracy of using molecular-based detection methods versus culture to estimate parasite prevalence is under debate. We evaluated the analytical and diagnostic performance of an existing qPCR assay...
Authors
Vanessa C. Lowe, Paul K. Hershberger, Carolyn S. Friedman

Climatic sensitivity of dryland soil CO2 fluxes differs dramatically with biological soil crust successional state Climatic sensitivity of dryland soil CO2 fluxes differs dramatically with biological soil crust successional state

Arid and semiarid ecosystems make up approximately 41% of Earth’s terrestrial surface and are suggested to regulate the trend and interannual variability of the global terrestrial carbon (C) sink. Biological soil crusts (biocrusts) are common dryland soil surface communities of bryophytes, lichens, and/or cyanobacteria that bind the soil surface together and that may play an important...
Authors
Colin Tucker, Scott Ferrenberg, Sasha C. Reed
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