Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42707
Bayesian applications in environmental and ecological studies with R and Stan Bayesian applications in environmental and ecological studies with R and Stan
Modern ecological and environmental sciences are dominated by observational data. As a result, traditional statistical training often leaves scientists ill-prepared for the data analysis tasks they encounter in their work. Bayesian methods provide a more robust and flexible tool for data analysis, as they enable information from different sources to be brought into the modelling process...
Authors
Song S. Qian, Mark Richard Dufour, Ibrahim Alameddine
Updates for Wake Atoll biosecurity management, biological control, survey, and management, and integrated pest management plans Updates for Wake Atoll biosecurity management, biological control, survey, and management, and integrated pest management plans
Pests and invasive species have been defined as any organism that can have real or perceived adverse effects on operations, or the well-being of personnel, native plants, animals, their environment and ecosystem processes; attack or damage real property, supplies, equipment, or are otherwise undesirable (paraphrased from many sources including 53 Federal Register [FR] 15975, May 4, 1988...
Authors
Stacie A. Hathaway, James D. Jacobi, Robert Peck, Robert N. Fisher
A recombinant rabies vaccine that prevents viral shedding in rabid common vampire bats (Desmodus rotundus) A recombinant rabies vaccine that prevents viral shedding in rabid common vampire bats (Desmodus rotundus)
Vampire bat transmitted rabies (VBR) is a continuing burden to public health and agricultural sectors in Latin America, despite decades-long efforts to control the disease by culling bat populations. Culling has been shown to disperse bats, leading to an increased spread of rabies. Thus, non-lethal strategies to control VBR, such as vaccination, are desired. Here, we evaluated the safety...
Authors
Elsa M. Cardenas-Canales, Andres Velasco-Villa, James A. Ellison, Panayampalli S. Satheshkumar, Jorge E. Osario, Tonie E. Rocke
Confirmation that eagle fatalities can be reduced by automated curtailment of wind turbines Confirmation that eagle fatalities can be reduced by automated curtailment of wind turbines
Automated curtailment is potentially a powerful technique to reduce collision mortality of wildlife with wind turbines. Previously, we used a before–after–control–impact framework to demonstrate that eagle fatalities declined after automated curtailment was implemented with the IdentiFlight system at a wind power facility in Wyoming, USA. We received substantial interest and feedback...
Authors
Christopher J. W. McClure, Brian W. Rolek, Leah Dunn, Jennifer D. McCabe, Luke Martinson, Todd E. Katzner
Modeling the spatial and temporal dynamics of land-based polar bear denning in Alaska Modeling the spatial and temporal dynamics of land-based polar bear denning in Alaska
Although polar bears (Ursus maritimus) of the Southern Beaufort Sea (SBS) subpopulation have commonly created maternal dens on sea ice in the past, maternal dens on land have become increasingly prevalent as sea ice declines. This trend creates conditions for increased human–bear interactions associated with local communities and industrial activity. Maternal denning is a vulnerable...
Authors
Vijay P. Patil, George M. Durner, David C. Douglas, Todd C. Atwood
Effects of formaldehyde (Parasite-S®) on biofilter nitrification from a cold- and a warm freshwater RAS Effects of formaldehyde (Parasite-S®) on biofilter nitrification from a cold- and a warm freshwater RAS
The effect of Parasite-S® (an aqueous formaldehyde solution) on the nitrification processes of biofilters was evaluated in two recirculating aquaculture systems (RASs). Rearing tanks in the warmwater RAS contained yellow perch (Perca flavescens) and grass carp (Ctenopharyngodon idella) with an initial weight of 166.8 kg and a mean density of 39.5 kg/m3. Rearing tanks in the coldwater RAS...
Authors
Kim T. Fredricks, Susan M. Schleis, Justin Smerud, Mark P. Gaikowski, Richard A. Erickson, Jillian Lee Hebert, Gregory J. Fischer, Kendall Holmes, Christopher F Hartleb
Genome resequencing clarifies phylogeny and reveals patterns of selection in the toxicogenomics model Pimephales promelas Genome resequencing clarifies phylogeny and reveals patterns of selection in the toxicogenomics model Pimephales promelas
Background The fathead minnow (Pimephales promelas) is a model species for toxicological research. A high-quality genome reference sequence is available, and genomic methods are increasingly used in toxicological studies of the species. However, phylogenetic relationships within the genus remain incompletely known and little population-genomic data are available for fathead minnow...
Authors
Katy E. Klymus, Robert A. Hrabik, Nathan Thompson, Robert S. Cornman
Range-wide sources of variation in reproductive rates of northern spotted owls Range-wide sources of variation in reproductive rates of northern spotted owls
We conducted a range-wide investigation of the dynamics of site level reproductive rate of northern spotted owls using survey data from 11 study areas across the sub-species geographic range collected during 1993–2018. Our analytical approach accounted for imperfect detection of owl pairs and misclassification of successful reproduction (i.e., at least one young fledged) and contributed...
Authors
Jeremy T. Rockweit, Julianna M Jenkins, James E. Hines, James D. Nichols, Katie Dugger, Alan B. Franklin, Peter C. Carlson, William L. Kendall, Damon B. Lesmeister, Christopher McCafferty, Steven H. Ackers, L. Steven Andrews, Larissa Bailey, Jesse Burgher, Kenneth P. Burnham, Tara E. Chestnut, Mary M Conner, Raymond J. Davis, Krista E. Dilione, Eric D. Forsman, Elizabeth M. Glenn, Scott A. Gremel, Keith A. Hamm, Dale R. Herter, J. Mark Higley, Rob B. Horn, David W Lamphear, Trent L. McDonald, Janice A Reid, Carl J. Schwarz, David C. Simon, Stan G Sovern, James K. Swingle, David Wiens, Heather Wise, Charles B. Yackulic
Variation in within-host replication kinetics among virus genotypes provides evidence of specialist and generalist infection strategies across three salmonid host species Variation in within-host replication kinetics among virus genotypes provides evidence of specialist and generalist infection strategies across three salmonid host species
Theory of the evolution of pathogen specialization suggests that a specialist pathogen gains high fitness in one host, but this comes with fitness loss in other hosts. By contrast, a generalist pathogen does not achieve high fitness in any host, but gains ecological fitness by exploiting different hosts, and has higher fitness than specialists in nonspecialized hosts. As a result...
Authors
David James Paez, Douglas G. McKenney, Maureen K. Purcell, Kerry A. Naish, Gael Kurath
Predicting physical and geomorphic habitat associated with historical lake whitefish and cisco spawning locations in Lakes Erie and Ontario Predicting physical and geomorphic habitat associated with historical lake whitefish and cisco spawning locations in Lakes Erie and Ontario
The Great Lakes basin was historically populated by multiple, coevolved coregonine species, but much of that diversity has been lost. In Lakes Erie and Ontario, both lake whitefish (Coregonus clupeaformis) and cisco (Coregonus artedi) occurred in high numbers before habitat degradation, overfishing, invasive species, and other factors caused significant declines. There is growing...
Authors
Hannah M Schaefer, Andrew Edgar Honsey, David Bunnell, Brian Weidel, Robin DeBruyne, James S. Diana, Dimitry Gorsky, Edward F. Roseman
Evaluation of Francisella orientalis ΔpdpA as a live attenuated vaccine against piscine Francisellosis in Nile tilapia Evaluation of Francisella orientalis ΔpdpA as a live attenuated vaccine against piscine Francisellosis in Nile tilapia
Francisella orientalis is an important bacterial pathogen of marine and freshwater fish with worldwide distribution. Fish francisellosis is a severe subacute to chronic granulomatous disease, with high mortalities and high infectivity rates in cultured and wild fish. To date, there is no approved vaccine for this disease. In this study, we evaluated the efficacy of a defined F...
Authors
Fernanda de Alexandre Sebastiao, John Hansen, Esteban Soto
Eimeria albigulae (Apicomplexa: Eimeriidae): New host and distributional record from the Bryant's woodrat, Neotoma bryanti (Rodentia: Cricetidae), from California, U.S.A. Eimeria albigulae (Apicomplexa: Eimeriidae): New host and distributional record from the Bryant's woodrat, Neotoma bryanti (Rodentia: Cricetidae), from California, U.S.A.
Fecal samples, collected in July 2020 and April–May 2021 from 17 Bryant's woodrats, Neotoma bryanti Merriam, from 3 sites in San Diego, Orange, and San Bernardino counties, California, were examined for coccidial parasites. Three of 8 (38%) woodrats from a single site in San Diego County were found to be passing oocysts of Eimeria albigulae Levine, Ivens, and Kruidenier, 1957...
Authors
Chris T. McAllister, John A. Hnida, Robert N. Fisher