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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42874

Congruent population genetic structure but differing depths of divergence for three alpine stoneflies with similar ecology and geographic distributions Congruent population genetic structure but differing depths of divergence for three alpine stoneflies with similar ecology and geographic distributions

Comparative population genetic studies provide a powerful means for assessing the degree to which evolutionary histories may be congruent among taxa while also highlighting the potential for cryptic diversity within existing species.In the Rocky Mountains, three confamilial stoneflies (Zapada glacier , Lednia tumana , and Lednia tetonica ; Plecoptera, Nemouridae) occupy cold alpine...
Authors
Scott Hotaling, J. Joseph Giersch, Debra S. Finn, Lusha M. Tronstad, Steve Jordan, Larry Serpa, Ronald Call, Clint C. Muhlfeld, David W. Weisrock

Time-to-detection occupancy modeling: An efficient method for analyzing the occurrence of amphibians and reptiles Time-to-detection occupancy modeling: An efficient method for analyzing the occurrence of amphibians and reptiles

Occupancy models provide a reliable method of estimating species distributions while accounting for imperfect detectability. The cost of accounting for false absences is that detection and nondetection surveys typically require repeated visits to a site or multiple-observer techniques. More efficient methods of collecting data to estimate detection probabilities would allow additional...
Authors
Brian J. Halstead, Patrick M. Kleeman, Jonathan P. Rose

Development of new information to inform fish passage decisions at the Yale and Merwin hydro projects on the Lewis River, Washington—Final report, 2018 Development of new information to inform fish passage decisions at the Yale and Merwin hydro projects on the Lewis River, Washington—Final report, 2018

The reintroduction of extirpated salmonids to historically occupied areas is becoming increasingly common as a conservation and recovery strategy. Often, reintroductions are implemented after the factors that originally led to species extirpation have been reduced, eliminated, or mitigated. For anadromous Oncorhynchus spp. (Pacific salmon) and O. mykiss (steelhead), addressing barriers...
Authors
Robert K. Al-Chokhachy, Christopher L. Clark, Mark H. Sorel, David A. Beauchamp

A preliminary assessment of hyperspectral remote sensing technology for mapping submerged aquatic vegetation in the Upper Delaware River National Parks A preliminary assessment of hyperspectral remote sensing technology for mapping submerged aquatic vegetation in the Upper Delaware River National Parks

Hyperspectral remote sensing of submerged aquatic vegetation is a complex and difficult process that is affected by unique constraints on the energy flow profile near and below the water surface. In addition, shallow, winding, lotic systems, such as the Upper Delaware River, present additional remote sensing problems in the form of specular reflectance, variable depth and constituents in...
Authors
E. Terrence Slonecker, Siddiq Kalaly, John A. Young, Mary Ann Furedi, Kelly O. Maloney, Don Hamilton, Richard Evans, Elizabeth Zinecker

Southern Great Plains Rapid Ecoregional Assessment—Volume II. Species and assemblages Southern Great Plains Rapid Ecoregional Assessment—Volume II. Species and assemblages

The Southern Great Plains Rapid Ecoregional Assessment was conducted in partnership with the Bureau of Land Management (BLM) and the Great Plains Landscape Conservation Cooperative. The overall goal of the Rapid Ecoregional Assessments (REAs) is to compile and synthesize regional datasets to facilitate evaluation of the cumulative effects of change agents on priority ecological...
Authors
Gordon C. Reese, Natasha B. Carr, Lucy E. Burris

Vegetative and geomorphic complexity at tributary junctions on the Colorado and Dolores Rivers: a blueprint for riparian restoration Vegetative and geomorphic complexity at tributary junctions on the Colorado and Dolores Rivers: a blueprint for riparian restoration

Context Habitat complexity in rivers is linked to dynamic fluvial conditions acting at various spatial scales. On regulated rivers in the western United States, tributaries are regions of high energy and disturbance, providing important resource inputs for riparian ecosystems. Objectives This study investigated spatial patterns and extents of tributary influence on riparian habitat...
Authors
Margaret S. White, Brian G. Tavernia, Patrick B. Shafroth, Teresa B. Chapman, John S. Sanderson

Intensive oyster aquaculture can reduce disease impacts on sympatric wild oysters Intensive oyster aquaculture can reduce disease impacts on sympatric wild oysters

Risks associated with disease spread from fish and shellfish farming have plagued the growth and public perception of aquaculture worldwide. However, by processing nutrients and organic material from the water column, the culture of many suspension-feeding bivalves has been proposed as a novel solution toward mitigating problems facing coastal water quality, including the removal of...
Authors
Tal Ben-Horin, Colleen A. Burge, David Bushek, Maya L. Groner, Dina A. Proestou, Lauren I. Huey, Gorka Bidegain, Ryan B. Carnegie

Indicators of ecosystem structure and function for the Upper Mississippi River System Indicators of ecosystem structure and function for the Upper Mississippi River System

This report documents the development of quantitative measures (indicators) of ecosystem structure and function for use in a Habitat Needs Assessment (HNA) for the Upper Mississippi River System (UMRS). HNAs are led periodically by the U.S. Army Corps of Engineers’ Upper Mississippi River Restoration (UMRR) Program, which is the primary habitat restoration program on the UMRS. The UMRR...
Authors
Nathan R. De Jager, James T. Rogala, Jason J. Rohweder, Molly Van Appledorn, Kristen L. Bouska, Jeffrey N. Houser, Kathi Jo Jankowski

Optimization of salt marsh management at the Bombay Hook National Wildlife Refuge, Delaware, through use of structured decision making Optimization of salt marsh management at the Bombay Hook National Wildlife Refuge, Delaware, through use of structured decision making

Structured decision making is a systematic, transparent process for improving the quality of complex decisions by identifying measurable management objectives and feasible management actions; predicting the potential consequences of management actions relative to the stated objectives; and selecting a course of action that maximizes the total benefit achieved and balances tradeoffs among
Authors
Hilary A. Neckles, James E. Lyons, Jessica L. Nagel, Susan C. Adamowicz, Toni Mikula, Susan T. Guiteras, Laura R. Mitchell

Communicating information on nature-related topics: Preferred information channels and trust in sources Communicating information on nature-related topics: Preferred information channels and trust in sources

How information is communicated influences the public’s environmental perceptions and behaviors. Information channels and sources both play an important role in the dissemination of information. Trust in a source is often used as a proxy for whether a particular piece of information is credible. To determine preferences for information channels and trust in various sources for...
Authors
Emily J. Wilkins, Holly M. Miller, Elizabeth Tilak, Rudy Schuster

Identification of bees in southwest Idaho—A guide for beginners Identification of bees in southwest Idaho—A guide for beginners

This document was prepared to help scientists and the public, both of whom may not be familiar with bee taxonomy, learn how to practically identify bees in sagebrush steppe and shrubland habitats in southwest Idaho. We provide information to identify bees to the level of family and genus. A tentative list of the bee genera captured at sites used for insect community studies is included.
Authors
Emily R. Sun, David S. Pilliod

Observer-free experimental evaluation of habitat and distance effects on the detection of anuran and bird vocalizations Observer-free experimental evaluation of habitat and distance effects on the detection of anuran and bird vocalizations

Acoustic surveys of vocalizing animals are conducted to determine density, distribution, and diversity. Acoustic surveys are traditionally performed by human listeners, but automated recording devices (ARD) are becoming increasingly popular. Signal strength decays, or attenuates, with increasing distance between source and receiver and some habitat types may differentially increase...
Authors
Andrew R. MacLaren, Paul S. Crump, J. Andrew Royle, Michael R. J. Forstner
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