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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42999

Phylogeography and evolution of infectious hematopoietic necrosis virus in China Phylogeography and evolution of infectious hematopoietic necrosis virus in China

Infectious hematopoietic necrosis virus (IHNV) is a well-known rhabdoviral pathogen of salmonid fish. In this study, a comprehensive analysis of 40 IHNV viruses isolated from thirteen fish farms in nine geographically dispersed Chinese provinces during 2012 to 2017 is presented. Identity of nucleotide and amino acid sequences among all the complete glycoprotein (G) genes from Chinese...
Authors
Liming Xu, Jingzhuang Zhao, Miao Liu, Gael Kurath, Rachel B. Breyta, Guangming Ren, Jiasheng Yin, Hongbai Liu, Tongyan Lu

Occupancy models for citizen-science data Occupancy models for citizen-science data

Large‐scale citizen‐science projects, such as atlases of species distribution, are an important source of data for macroecological research, for understanding the effects of climate change and other drivers on biodiversity, and for more applied conservation tasks, such as early‐warning systems for biodiversity loss.However, citizen‐science data are challenging to analyse because the...
Authors
Res Altwegg, James D. Nichols

Per- and polyfluoroalkyl substances (PFAS) in plasma of the West Indian manatee (Trichechus manatus) Per- and polyfluoroalkyl substances (PFAS) in plasma of the West Indian manatee (Trichechus manatus)

Per- and polyfluoroalkyl substances (PFAS) are ubiquitous, synthetic anthropogenic chemicals known to infiltrate and persist in biological systems as a result of their stability and bioaccumulation potential. This study investigated 15 PFAS, including short-chain carboxylic and sulfonic acids, and their presence in a threatened herbivore, the West Indian manatee (Trichechus manatus)...
Authors
Kady Palmer, Jacqueline T. Bangma, Jessica L. Reiner, Robert K. Bonde, Jeffrey E. Korte, Ashley S. P. Boggs, John A. Bowden

Wasting disease and static environmental variables drive sea star assemblages in the northern Gulf of Alaska Wasting disease and static environmental variables drive sea star assemblages in the northern Gulf of Alaska

Sea stars are ecologically important in rocky intertidal habitats where they can play an apex predator role, completely restructuring communities. The recent sea star die-off throughout the eastern Pacific, known as Sea Star Wasting Disease, has prompted a need to understand spatial and temporal patterns of sea star assemblages and the environmental variables that structure these...
Authors
Brenda Konar, Timothy J. Mitchell, K. Iken, Thomas Dean, Daniel Esler, Mandy Lindeberg, Benjamin Pister, Ben P. Weitzman

Micro-geographic population genetic structure within Arctic cod (Boreogadus saida) in Beaufort Sea of Alaska Micro-geographic population genetic structure within Arctic cod (Boreogadus saida) in Beaufort Sea of Alaska

Many marine organisms show significant levels of genetic heterogeneity on local spatial scales despite exhibiting limited genetic structure at large geographic scales which can be produced through a variety of mechanisms. The Arctic cod (Boreogadus saida) is a circumpolar species and is a vital species in Arctic food webs. To examine population genetic structure of Arctic cod at macro-...
Authors
Robert E. Wilson, George K. Sage, Kate Wedemeyer, Sarah A. Sonsthagen, Damian M. Menning, Megan C. Gravley, R. John Nelson, Sandra L. Talbot

Estimating uncertainty of North American landbird population sizes Estimating uncertainty of North American landbird population sizes

An important metric for many aspects of species conservation planning and risk assessment is an estimate of total population size. For landbirds breeding in North America, Partners in Flight (PIF) generates global, continental, and regional population size estimates. These estimates are an important component of the PIF species assessment process, but have also been used by others for a...
Authors
Jessica C. Stanton, Peter J. Blancher, Kenneth V. Rosenberg, Arvind O. Panjabi, Wayne E. Thogmartin

Assemblage structure, vertical distributions and stable‐isotope compositions of anguilliform leptocephali in the Gulf of Mexico Assemblage structure, vertical distributions and stable‐isotope compositions of anguilliform leptocephali in the Gulf of Mexico

In August 2007, October 2008 and September–October 2010, 241 Tucker trawl and plankton net tows were conducted at the surface to depths of 1377 m at six locations in the northern and eastern Gulf of Mexico (GOM) to document leptocephalus diversity and determine how assemblage structure, larval size, abundance and isotopic signatures differ across the region and with depth. Overall, 2696
Authors
Andrea M. Quattrini, Jennifer McClain Counts, Stephen J. Artabane, Adela Roa-Varon, Tara C. McIver, Michael Rhode, Steve W. Ross

The effects of topographic surveying technique and data resolution on the detection and interpretation of geomorphic change The effects of topographic surveying technique and data resolution on the detection and interpretation of geomorphic change

Change detection of high resolution topographic data is commonly used in river valleys to quantify reach- and site-scale sediment budgets by estimating the erosion/deposition volume, and to interpret the geomorphic processes driving erosion and deposition. Field survey data are typically collected as point clouds that are often converted to gridded raster datasets and the ultimate choice...
Authors
Alan Kasprak, Nathaniel D. Bransky, Joel B. Sankey, Joshua Caster, Temulen T. Sankey

Impact of prey occupancy and other ecological and anthropogenic factors on Tiger distribution in Thailand’s Western Forest Complex Impact of prey occupancy and other ecological and anthropogenic factors on Tiger distribution in Thailand’s Western Forest Complex

Despite conservation efforts, large mammals such as tigers (Panthera tigris) and their main prey, gaur (Bos gaurus), banteng (Bos javanicus), and sambar (Rusa unicolor), are highly threatened and declining across their entire range. The only large viable source population of tigers in mainland Southeast Asia occurs in Thailand's Western Forest Complex (WEFCOM), an approximately 19,000 km...
Authors
Somphot Duangchatrasiri, Pornkamol Jornburom, Sitthichai Jinamoy, Anak Pattanvibool, James E. Hines, Todd W. Arnold, John Fieberg, James L D Smith

Water column nutrient processing rates in rivermouths of Green Bay (Lake Michigan) Water column nutrient processing rates in rivermouths of Green Bay (Lake Michigan)

Understanding the quantity and form of nutrient loads to large lakes is necessary to understand controls over primary production, phytoplankton community composition and the production of phytotoxins. Nutrient loading estimates to large lakes are primarily made at stream gages that are deliberately placed outside the direct influence of lake processes, but these estimates cannot take...
Authors
James H. Larson, Mary Anne Evans, Faith A. Fitzpatrick, Paul C. Frost, Sean Bailey, Robert J. Kennedy, William F. James, William B. Richardson, Paul C. Reneau

Description of disparate responses of two indoor feral bee colonies Description of disparate responses of two indoor feral bee colonies

As is sometimes the case, field research does not always go according to plan. This is especially true when the research involves free-ranging animals. We recently conducted a preliminary field study that involved placing a beehive in a tent and individually releasing marked honey bees (Apis mellifera) outdoors to study their ability to locate sugar water rewards by following olfactory...
Authors
Nimish B. Vyas, Amanda D. Plunkett

Simulating demography, genetics, and spatially explicit processes to inform reintroduction of a threatened char Simulating demography, genetics, and spatially explicit processes to inform reintroduction of a threatened char

The success of species reintroductions can depend on a combination of environmental, demographic, and genetic factors. Although the importance of these factors in the success of reintroductions is well‐accepted, they are typically evaluated independently, which can miss important interactions. For species that persist in metapopulations, movement through and interaction with the...
Authors
Meryl C. Mims, Casey C. Day, Jacob J. Burkhart, Matthew R. Fuller, Jameson Hinkle, Andrew Bearlin, Jason B. Dunham, Patrick W. DeHaan, Zachary A. Holden, Erin L. Landguth
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