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Fundamental Science Practices Frequently Asked Questions

The frequently asked questions (FAQs) represent a Bureau consensus to ensure interpretations of Fundamental Science Practices (FSP) policies are uniformly applied throughout the USGS. These FAQs provide further explanation of the FSP and related publishing policies, as well as describe the procedures and decision making necessary to meet the policy requirements.

FSP Background

FSP Background

Authorship

Authorship

Review

Review

Approval

Approval

USGS Publication Series

USGS Publication Series

Journal Publications

Journal Publications

Metadata

Metadata

Data

Data

Software

Software

Project Reporting and Cooperator Publications

Project Reporting and Cooperator Publications

Web Pages, Conferences, Abstracts, and Presentations

Web Pages, Conferences, Abstracts, and Presentations

Preprints

Preprints

The FAQs will be updated as necessary and changes in the form of additions or revisions are reflected by date (month/year) as they occur. Questions about the FSP that are not addressed here should be directed to gs_fspac@usgs.gov.

 

FSP Frequently Asked Questions

Filter Total Items: 217
Do USGS scientific software information products require a Digital Object Identifier (DOI)? [139]

Do USGS scientific software information products require a Digital Object Identifier (DOI)? [139]

Yes. USGS scientific software information products must be assigned a DOI with the 10.5066 prefix. [Read more]
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When should software not be developed publicly? [140] When should software not be developed publicly? [140]

Department of the Interior, including USGS, applies strict requirements and platform authorizations for sharing software in public repositories. To avoid potential violations, policy-compliant and secure internal code repositories are available for sharing and releasing software. [Read more]
When should software not be developed publicly? [140]

When should software not be developed publicly? [140]

Department of the Interior, including USGS, applies strict requirements and platform authorizations for sharing software in public repositories. To avoid potential violations, policy-compliant and secure internal code repositories are available for sharing and releasing software. [Read more]
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What is the distinction in USGS scientific software information products between libraries, scripts, workflows, or other packages of source code? [141] What is the distinction in USGS scientific software information products between libraries, scripts, workflows, or other packages of source code? [141]

Author should work together with their supervisor and Science Center Director to determine if a set of source code is appropriate for release as a USGS scientific software release or if the algorithms or statistical methods would alternatively be more appropriate for inclusion in an associated manuscript or the metadata of a data release. [Read more]
What is the distinction in USGS scientific software information products between libraries, scripts, workflows, or other packages of source code? [141]

What is the distinction in USGS scientific software information products between libraries, scripts, workflows, or other packages of source code? [141]

Author should work together with their supervisor and Science Center Director to determine if a set of source code is appropriate for release as a USGS scientific software release or if the algorithms or statistical methods would alternatively be more appropriate for inclusion in an associated manuscript or the metadata of a data release. [Read more]
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Where must USGS scientific software information products be hosted? [142] Where must USGS scientific software information products be hosted? [142]

The authoritative or original reference copy of all USGS scientific software information products must be maintained on an approved platform. As of the writing of this FAQ, these the two platforms options were (1) https://code.usgs.gov/ or (2) https://github.com/doi-usgs/. [Read more]
Where must USGS scientific software information products be hosted? [142]

Where must USGS scientific software information products be hosted? [142]

The authoritative or original reference copy of all USGS scientific software information products must be maintained on an approved platform. As of the writing of this FAQ, these the two platforms options were (1) https://code.usgs.gov/ or (2) https://github.com/doi-usgs/. [Read more]
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What if a USGS coauthor finds out from the non-USGS lead author that the scientific information product has been accepted by the journal and will be published more quickly than expected? [144] What if a USGS coauthor finds out from the non-USGS lead author that the scientific information product has been accepted by the journal and will be published more quickly than expected? [144]

Inform your supervisor, Center Director, and BAO to expedite review and approvals; BAOs may be able to move the product up in their queues. Manuscripts that will be posted online as soon as they are received by the journal should obtain Bureau approval prior to submission. To avoid these situations, discuss the USGS FSP process with coauthors before a manuscript is sent to a journal. [Read more]
What if a USGS coauthor finds out from the non-USGS lead author that the scientific information product has been accepted by the journal and will be published more quickly than expected? [144]

What if a USGS coauthor finds out from the non-USGS lead author that the scientific information product has been accepted by the journal and will be published more quickly than expected? [144]

Inform your supervisor, Center Director, and BAO to expedite review and approvals; BAOs may be able to move the product up in their queues. Manuscripts that will be posted online as soon as they are received by the journal should obtain Bureau approval prior to submission. To avoid these situations, discuss the USGS FSP process with coauthors before a manuscript is sent to a journal. [Read more]
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Why must the accepted manuscript be placed in the IPDS after it is published by the journal? [145] Why must the accepted manuscript be placed in the IPDS after it is published by the journal? [145]

The IPDS serves as an archive for short-term, temporary records. In the event the journal does not provide free public access, the accepted manuscript that is placed in the IPDS can be provided to the public through the USGS Publications Warehouse. This will ensure the USGS meets the OSTP public access requirement for federally funded research. [Read more]
Why must the accepted manuscript be placed in the IPDS after it is published by the journal? [145]

Why must the accepted manuscript be placed in the IPDS after it is published by the journal? [145]

The IPDS serves as an archive for short-term, temporary records. In the event the journal does not provide free public access, the accepted manuscript that is placed in the IPDS can be provided to the public through the USGS Publications Warehouse. This will ensure the USGS meets the OSTP public access requirement for federally funded research. [Read more]
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Under what circumstances should products in the Restricted-File Federal Interagency Report (RFFIR) series (formerly Administrative Report series) be prepared? [146] Under what circumstances should products in the Restricted-File Federal Interagency Report (RFFIR) series (formerly Administrative Report series) be prepared? [146]

These limited-use publication series products are prepared when directed by USGS management in concert with or independent of a request from a U.S. Government agency, foreign government or agency, or international entity funding partner. RFFIRs are directed and (or) requested when investigations involve threatened or endangered species or are in support of confidential negotiations or litigation.
Under what circumstances should products in the Restricted-File Federal Interagency Report (RFFIR) series (formerly Administrative Report series) be prepared? [146]

Under what circumstances should products in the Restricted-File Federal Interagency Report (RFFIR) series (formerly Administrative Report series) be prepared? [146]

These limited-use publication series products are prepared when directed by USGS management in concert with or independent of a request from a U.S. Government agency, foreign government or agency, or international entity funding partner. RFFIRs are directed and (or) requested when investigations involve threatened or endangered species or are in support of confidential negotiations or litigation.
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What are the possible format options for RFFIRs? [147] What are the possible format options for RFFIRs? [147]

A letter report is one possible format for a Restricted-File Federal Interagency Report (RFFIR). An optional template for RFFIRs is available. [Read more]
What are the possible format options for RFFIRs? [147]

What are the possible format options for RFFIRs? [147]

A letter report is one possible format for a Restricted-File Federal Interagency Report (RFFIR). An optional template for RFFIRs is available. [Read more]
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As an author, what is my responsibility for maintaining official copies of my Bureau-approved RFFIR? [149] As an author, what is my responsibility for maintaining official copies of my Bureau-approved RFFIR? [149]

A printed copy of each Restricted-File Federal Interagency Report (RFFIR) must be sent to the USGS Library (Reston) for the Library’s limited-access storage. Another copy of the RFFIR should be maintained with other project material in accordance with the Department’s policy regarding official records. [Read more]
As an author, what is my responsibility for maintaining official copies of my Bureau-approved RFFIR? [149]

As an author, what is my responsibility for maintaining official copies of my Bureau-approved RFFIR? [149]

A printed copy of each Restricted-File Federal Interagency Report (RFFIR) must be sent to the USGS Library (Reston) for the Library’s limited-access storage. Another copy of the RFFIR should be maintained with other project material in accordance with the Department’s policy regarding official records. [Read more]
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How can I convert an RFFIR publicly released by the receiving U.S. Government agency, foreign government or agency, or international entity funding partner into a USGS Open-File Report (OFR) to be cited and indexed in the Publications Warehouse? [150] How can I convert an RFFIR publicly released by the receiving U.S. Government agency, foreign government or agency, or international entity funding partner into a USGS Open-File Report (OFR) to be cited and indexed in the Publications Warehouse? [150]

Restricted-File Federal Interagency Reports (RFFIRs) are not public and cannot be cited, it may be worthwhile to publicly release these reports in other USGS series, such as Open File Report (OFR), once deemed appropriate to do so. A new IPDS record for OFR should be created, following the standard process for review, approval, and coordination with the Science Publishing Network. [Read more]
How can I convert an RFFIR publicly released by the receiving U.S. Government agency, foreign government or agency, or international entity funding partner into a USGS Open-File Report (OFR) to be cited and indexed in the Publications Warehouse? [150]

How can I convert an RFFIR publicly released by the receiving U.S. Government agency, foreign government or agency, or international entity funding partner into a USGS Open-File Report (OFR) to be cited and indexed in the Publications Warehouse? [150]

Restricted-File Federal Interagency Reports (RFFIRs) are not public and cannot be cited, it may be worthwhile to publicly release these reports in other USGS series, such as Open File Report (OFR), once deemed appropriate to do so. A new IPDS record for OFR should be created, following the standard process for review, approval, and coordination with the Science Publishing Network. [Read more]
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Can I cite or index RFFIRs on a USGS public-facing web page? [151] Can I cite or index RFFIRs on a USGS public-facing web page? [151]

Restricted-File Federal Interagency Reports (RFFIRs) are not to be referenced, posted, or indexed on USGS public-facing web pages or included in a list of publications on individual staff profile pages. Because RFFIRs are not citable, they are not to be indexed in the USGS Publications Warehouse or included in a list of publications on individual staff profile pages.
Can I cite or index RFFIRs on a USGS public-facing web page? [151]

Can I cite or index RFFIRs on a USGS public-facing web page? [151]

Restricted-File Federal Interagency Reports (RFFIRs) are not to be referenced, posted, or indexed on USGS public-facing web pages or included in a list of publications on individual staff profile pages. Because RFFIRs are not citable, they are not to be indexed in the USGS Publications Warehouse or included in a list of publications on individual staff profile pages.
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What are the entities for which I can and cannot prepare RFFIRs? [152] What are the entities for which I can and cannot prepare RFFIRs? [152]

The Restricted-File Federal Interagency Reports (RFFIR) series is to be used for confidential communication between USGS and a U.S. Government agency, foreign government or agency, or international entity funding partner. RFFIRs cannot be produced for private communications. [Read more]
What are the entities for which I can and cannot prepare RFFIRs? [152]

What are the entities for which I can and cannot prepare RFFIRs? [152]

The Restricted-File Federal Interagency Reports (RFFIR) series is to be used for confidential communication between USGS and a U.S. Government agency, foreign government or agency, or international entity funding partner. RFFIRs cannot be produced for private communications. [Read more]
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What types of project progress information can be reported and why is that important? [153] What types of project progress information can be reported and why is that important? [153]

Project progress reporting can involve noninterpretive scientific information, previously published interpretive scientific information, or new interpretive scientific. The type of content dictates how the FSP apply and whether tracking in the IPDS is required. [Read more]
What types of project progress information can be reported and why is that important? [153]

What types of project progress information can be reported and why is that important? [153]

Project progress reporting can involve noninterpretive scientific information, previously published interpretive scientific information, or new interpretive scientific. The type of content dictates how the FSP apply and whether tracking in the IPDS is required. [Read more]
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What formats can be used for reports of project progress? [154] What formats can be used for reports of project progress? [154]

Reports of project progress that contain non-interpretive or previously published interpretive information can be delivered in slides, summaries, correspondence, emails, or oral communications; conversely, new interpretive content must be tracked in IPDS and may include: (1) abstract, poster, presentation, exhibit, newsletter, (2) USGS publication series product, or (3) outside publication. [Read...
What formats can be used for reports of project progress? [154]

What formats can be used for reports of project progress? [154]

Reports of project progress that contain non-interpretive or previously published interpretive information can be delivered in slides, summaries, correspondence, emails, or oral communications; conversely, new interpretive content must be tracked in IPDS and may include: (1) abstract, poster, presentation, exhibit, newsletter, (2) USGS publication series product, or (3) outside publication. [Read...
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Is there a product type for reports of project progress in IPDS? [155]

Is there a product type for reports of project progress in IPDS? [155]

No. There is not a product type in the IPDS for reports of project progress.
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What are the requirements for communicating unpublished interpretive content in reports of project progress among collaborators? [157] What are the requirements for communicating unpublished interpretive content in reports of project progress among collaborators? [157]

Project progress reports with new interpretive information must include disclaimers indicating preliminary/provisional, deliberative, predecisional nature of information; requirement to not disclose or release information; and waiving of USGS and U.S. Government liability. These reports must be labeled “Preliminary Information Subject to Revision. Not for Citation or Distribution." [Read more]
What are the requirements for communicating unpublished interpretive content in reports of project progress among collaborators? [157]

What are the requirements for communicating unpublished interpretive content in reports of project progress among collaborators? [157]

Project progress reports with new interpretive information must include disclaimers indicating preliminary/provisional, deliberative, predecisional nature of information; requirement to not disclose or release information; and waiving of USGS and U.S. Government liability. These reports must be labeled “Preliminary Information Subject to Revision. Not for Citation or Distribution." [Read more]
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What are the FSP requirements for reports of project progress that contain new interpretations and are released to the greater stakeholder community, steering councils, or cooperating groups who are not directly contributing to project activities? [158]

What are the FSP requirements for reports of project progress that contain new interpretations and are released to the greater stakeholder community, steering councils, or cooperating groups who are not directly contributing to project activities? [158]

If the project progress reports contain new interpretations, then the reports of project progress also require peer reviews, Bureau approval, and publication before being delivered to the greater community of stakeholders, steering councils, or cooperating groups who are not directly contributing to project activities. [Read more]
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Which reports of project progress are subject to FSP review and approval requirements? [159] Which reports of project progress are subject to FSP review and approval requirements? [159]

FSP review and approval of project progress depends on the content (new and interpretive findings versus noninterpretive or previously published information) and intended distribution of the report. [Read more]
Which reports of project progress are subject to FSP review and approval requirements? [159]

Which reports of project progress are subject to FSP review and approval requirements? [159]

FSP review and approval of project progress depends on the content (new and interpretive findings versus noninterpretive or previously published information) and intended distribution of the report. [Read more]
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May reports of project progress be discussed in conference presentations? [160] May reports of project progress be discussed in conference presentations? [160]

Reports of project progress may be presented at a scientific conference, but sensitive, confidential, or proprietary information cannot be discussed. Peer review is at the discretion of the Science Center Director. FSP requirements for presentation materials that are left or not left at scientific meetings and conferences apply.
May reports of project progress be discussed in conference presentations? [160]

May reports of project progress be discussed in conference presentations? [160]

Reports of project progress may be presented at a scientific conference, but sensitive, confidential, or proprietary information cannot be discussed. Peer review is at the discretion of the Science Center Director. FSP requirements for presentation materials that are left or not left at scientific meetings and conferences apply.
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How is reporting of project progress related to courtesy reviews by collaborating cooperators? [161] How is reporting of project progress related to courtesy reviews by collaborating cooperators? [161]

Reports of project progress are not related to the collaborator/partner courtesy reviews. While both types of reporting may contain new, interpretive content, a progress report discusses the status of project work and a draft of a final project report provided to collaborators for courtesy review discusses the results of the project. [Read more]
How is reporting of project progress related to courtesy reviews by collaborating cooperators? [161]

How is reporting of project progress related to courtesy reviews by collaborating cooperators? [161]

Reports of project progress are not related to the collaborator/partner courtesy reviews. While both types of reporting may contain new, interpretive content, a progress report discusses the status of project work and a draft of a final project report provided to collaborators for courtesy review discusses the results of the project. [Read more]
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Does a report of project progress that is noninterpretive or that includes interpretations only from previously published sources require a disclaimer statement before it is delivered to a cooperator, steering council, or stakeholder group? [162]

Does a report of project progress that is noninterpretive or that includes interpretations only from previously published sources require a disclaimer statement before it is delivered to a cooperator, steering council, or stakeholder group? [162]

A nonendorsement disclaimer statement, if appropriate, is the only statement that may be needed in a report of project progress that is noninterpretive or that includes interpretations only from previously published sources. Note, however, that published sources must always be cited.
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