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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 5011

The NorWeST summer stream temperature model and scenarios for the western U.S.: A crowd-sourced database and new geospatial tools foster a user-community and predict broad climate warming of rivers and streams The NorWeST summer stream temperature model and scenarios for the western U.S.: A crowd-sourced database and new geospatial tools foster a user-community and predict broad climate warming of rivers and streams

Thermal regimes are fundamental determinants of aquatic ecosystems, which makes description and prediction of temperatures critical during a period of rapid global change. The advent of inexpensive temperature sensors dramatically increased monitoring in recent decades, and although most monitoring is done by individuals for agency‐specific purposes, collectively these efforts constitute...
Authors
Daniel J. Isaak, Seth J. Wenger, Erin E. Peterson, Jay M Ver Hoef, David E Nagel, Charlie H. Luce, Steven W. Hostetler, Jason B. Dunham, Brett B. Roper, Sherry P Wollrab, Gwynne L Chandler, Dona L Horan, Sharon Parkes-Payne

Home range use and survival of southern flying squirrels in fragmented forest landscapes Home range use and survival of southern flying squirrels in fragmented forest landscapes

We studied home range use, spatial activity patterns, and annual survival of southern flying squirrels (SFS; Glaucomys volans) across fragmented landscapes of west-central Illinois. We calculated seasonal home range sizes and annual survival from 67 animals (36 males, 31 females) captured during 2014–2016. Home range and core area sizes were similar (P ≥ 0.46) among males and females...
Authors
Christopher N. Jacques, James S. Zweep, Sean E. Jenkins, Robert W. Klaver

CWDPRNP: A tool for cervid prion sequence analysis in program R CWDPRNP: A tool for cervid prion sequence analysis in program R

Chronic wasting disease is a fatal, neurological disease caused by an infectious prion protein, which affects economically and ecologically important members of the family Cervidae. Single nucleotide polymorphisms within the prion protein gene have been linked to differential susceptibility to the disease in many species. Wildlife managers are seeking to determine the frequencies of...
Authors
William L. Miller, W. David Walter

Estimating Mudpuppy (Necturus maculosus) abundance in the Lamoille River, Vermont, USA Estimating Mudpuppy (Necturus maculosus) abundance in the Lamoille River, Vermont, USA

The Mudpuppy (Necturus maculosus) is classified as a Species of Greatest Conservation Need by the state of Vermont. There is concern regarding status of populations in the Lake Champlain basin because of habitat alteration and potential effects of 3-trifluromethyl-4-nitrophenol (TFM), a chemical used to control Sea Lamprey (Petromyzon marinus). The purpose of our research was to assess...
Authors
Isaac C. Chellman, Donna L. Parrish, Therese M. Donovan

Future of Pacific salmon in the face of environmental change: Lessons from one of the world's remaining productive salmon regions Future of Pacific salmon in the face of environmental change: Lessons from one of the world's remaining productive salmon regions

Pacific salmon Oncorhynchus spp. face serious challenges from climate and landscape change, particularly in the southern portion of their native range. Conversely, climate warming appears to be allowing salmon to expand northwards into the Arctic. Between these geographic extremes, in the Gulf of Alaska region, salmon are at historically high abundances but face an uncertain future due...
Authors
Erik R. Schoen, Mark S. Wipfli, Jamie Trammell, Daniel J. Rinella, Angelica L. Floyd, Jess Grunblatt, Molly D. McCarthy, Benjamin E. Meyer, John M. Morton, James E. Powell, Anupma Prakash, Matthew N. Reimer, Svetlana L. Stuefer, Horacio Toniolo, Brett M. Wells, Frank D. W. Witmer

Enhancing hatch rate and survival in laboratory-reared hybrid Devils Hole Pupfish through application of antibiotics to eggs and larvae Enhancing hatch rate and survival in laboratory-reared hybrid Devils Hole Pupfish through application of antibiotics to eggs and larvae

We evaluated the effectiveness of four antibiotics in enhancing the hatch rate, larval survival, and adult survival of hybrid Devils Hole Pupfish Cyprinodon diabolis (hybridized with Ash Meadows Amargosa Pupfish C. nevadensis mionectes). Cephalexin (CEX; concentration = 6.6 mg/L of water), chloramphenicol (CAM; 50 mg/L), erythromycin (ERY; 12.5 mg/L), and trimethoprim sulfamethoxazole...
Authors
Olin Feuerbacher, Scott A. Bonar, Paul J. Barrett

Regime shifts and panarchies in regional scale social-ecological water systems Regime shifts and panarchies in regional scale social-ecological water systems

In this article we summarize histories of nonlinear, complex interactions among societal, legal, and ecosystem dynamics in six North American water basins, as they respond to changing climate. These case studies were chosen to explore the conditions for emergence of adaptive governance in heavily regulated and developed social-ecological systems nested within a hierarchical governmental...
Authors
Lance Gunderson, Barbara Cosens, Brian C. Chaffin, Craig Anthony Arnold, Alexander K. Fremier, Ahjond S. Garmestani, Robin Kundis Craig, Hannah Gosnell, Hannah E. Birge, Craig R. Allen, Melinda H. Benson, Ryan R. Morrison, Mark Stone, Joseph A. Hamm, Kristine T. Nemec, Edella Schlager, Dagmar Llewellyn

Using genetic pedigree reconstruction to estimate effective spawner abundance from redd surveys: an example involving Pacific lamprey (Entosphenus tridentatus) Using genetic pedigree reconstruction to estimate effective spawner abundance from redd surveys: an example involving Pacific lamprey (Entosphenus tridentatus)

Redd surveys are a commonly used technique for indexing the abundance of sexually mature fish in streams; however, substantial effort is often required to link redd counts to actual spawner abundance. In this study, we describe how genetic pedigree reconstruction can be used to estimate effective spawner abundance in a stream reach, using Pacific lamprey (Entosphenus tridentatus) as an...
Authors
S.L. Whitlock, L.D. Schultz, Carl B. Schreck, J.E. Hess

Resilience in ecotoxicology: Toward a multiple equilibrium concept Resilience in ecotoxicology: Toward a multiple equilibrium concept

The term resilience describes stress–response patterns across scientific disciplines. In ecology, advances have been made to clearly define resilience based on underlying mechanistic assumptions. Engineering resilience (rebound) is used to describe the ability of organisms to recover from adverse conditions (disturbances), which is termed the rate of recovery. By contrast, the ecological
Authors
Mirco Bundschuh, Ralf Schulz, Craig R. Allen, David G. Angeler

Ecological impacts of winter water level drawdowns on lake littoral zones: A review Ecological impacts of winter water level drawdowns on lake littoral zones: A review

Freshwater littoral zones harbor diverse ecological communities and serve numerous ecosystem functions that are controlled, in part, by natural water level fluctuations. However, human alteration of lake hydrologic regimes beyond natural fluctuations threaten littoral zone ecological integrity. One type of hydrologic alteration in lakes is winter water level drawdowns, which are...
Authors
Allison H. Roy

Is the impact of eutrophication on phytoplankton diversity dependent on lake volume/ecosystem size? Is the impact of eutrophication on phytoplankton diversity dependent on lake volume/ecosystem size?

Research focusing on biodiversity responses to the interactions of ecosystem size and anthropogenic stressors are based mainly on correlative gradient studies, and may therefore confound size-stress relationships due to spatial context and differences in local habitat features across ecosystems. We investigated how local factors related to anthropogenic stressors (e.g.,eutrophication)...
Authors
Didier L. Baho, Stina Drakare, Richard K. Johnson, Craig R. Allen, David G. Angeler

Spatially dependent responses of a large-river fish assemblage to bank stabilization and side channels Spatially dependent responses of a large-river fish assemblage to bank stabilization and side channels

The alteration of rivers by anthropogenic bank stabilization to prevent the erosion of economically valuable lands and structures has become commonplace. However, such alteration has ambiguous consequences for fish assemblages, especially in large rivers. Because most large, temperate rivers have impoundments, it can be difficult to separate the influences of bank stabilization...
Authors
Ann Marie Reinhold, Robert G. Bramblett, Alexander V. Zale, Geoffrey C. Poole, David W. Roberts
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