Publications
Browse publications authored by our scientists. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
Filter Total Items: 5294
Why the whole is greater than the sum of its parts: A case for population-level management Why the whole is greater than the sum of its parts: A case for population-level management
Catch-and-release regulations in recreational fisheries have been implemented for decades with the intention of allowing fishing while reducing fishing mortality. In addition, voluntary catch-and-release behaviors are increasingly common. Social and scientific interest in fish handling practices in catch-and-release fisheries as they relate to stress, reflex impairment, reproductive...
Authors
Matthew P. Corsi, Michael C. Quist, Joseph Kozfkay, Curtis J. Roth, Daniel J. Schill
Overview of North American isolates of chronic wasting disease used for strain research Overview of North American isolates of chronic wasting disease used for strain research
Chronic Wasting Disease (CWD) is a prion disease that affects Cervidae species, and is the only known prion disease transmitted among wildlife species. The key pathological feature is the conversion of the normal prion protein (PrPC) misfolding into abnormal forms (PrPSc), triggering the onset of CWD infections. The misfolding can generate distinct PrPSc conformations (strains) giving...
Authors
W. David Walter, Allen Jeffrey Herbst, Chia-Hua Lue, Jason C. Bartz, M. Camille Hopkins
Genetics of wild, whirling disease resistant rainbow trout populations in Colorado Genetics of wild, whirling disease resistant rainbow trout populations in Colorado
Introduction: Myxobolus cerebralis, the parasite responsible for salmonid whirling disease, was unintentionally introduced to and became established in Colorado in the 1990s. Mortality of young-of-year fish due to infection by M. cerebralis resulted in recruitment failure and subsequent significant declines in Rainbow Trout (Oncorhynchus mykiss) populations. The complex multistage...
Authors
Brian W. Avila, Eric R. Fetherman, Dana L. Winkelman, Melinda R. Baerwald
Thamnophis eques megalops (Northern Mexican Gartersnake). Longevity Thamnophis eques megalops (Northern Mexican Gartersnake). Longevity
No abstract available.
Authors
Mason J Ryan, Matt Goode, Anthony Pawlicki, Javan Mathias Bauder, C. Drew Foster, Damien Renner, Bradley Lawrence
Freshwater and diadromous Fishes of Puerto Rico Freshwater and diadromous Fishes of Puerto Rico
Freshwater and Diadromous Fishes of Puerto Rico describes the diversity of fishes in Puerto Rico’s freshwater environments and provides information on the history of research, management and conservation, and culture of fish and fisheries in Puerto Rico. This book’s catalog of fishes guides the reader in the identification of more than 50 native and nonnative species of fish from 22...
Authors
Thomas J. Kwak, Augustin C. Engman, Craig G. Lilyestrom, J. Wesley Neal, M. de Lourdes Olmeda
Living on the edge: Identifying demographic bottlenecks in an isolated sage-grouse population Living on the edge: Identifying demographic bottlenecks in an isolated sage-grouse population
The greater sage-grouse (Centrocercus urophasianus: hereafter sage-grouse) population in Modoc County California is geographically isolated and contains a single lek (from 56 leks in the 1940s), despite significant efforts to increase the population through translocations and habitat improvement. Repeated wildfire within the landscape has led to an increase in invasive annual grasses and...
Authors
Chelsea E. Sink, Katie M. Dugger, Christian A. Hagen, John N. Vradenburg
Urbanization and host relatedness shape virome composition in a widespread, generalist carnivore Urbanization and host relatedness shape virome composition in a widespread, generalist carnivore
Urban wildlife species have the potential to serve as links in disease transmission between wildlife, humans and domestic animals at the wildland–urban interface (WUI), contributing to both sustained cross-species transmission of pathogens and the emergence of diseases in susceptible populations. However, the relative roles of host and environmental factors in shaping the composition of...
Authors
Natalie Payne, Desiree Andersen, Cheryl Mollohan, Koenraad Van Doorslaer, Leigh Combrink, Melanie Culver
Spatiotemporal causal inference with mechanistic ecological models: Evaluating targeted culling on chronic wasting disease dynamics in cervids Spatiotemporal causal inference with mechanistic ecological models: Evaluating targeted culling on chronic wasting disease dynamics in cervids
Spatiotemporal causal inference methods are needed to detect the effect of interventions on indirectly measured epidemiological outcomes that go beyond studying spatiotemporal correlations. Chronic wasting disease (CWD) causes neurological degeneration and eventual death to white-tailed deer (Odocoileus virginianus) in Wisconsin. Targeted culling involves removing deer after traditional...
Authors
Juan Francisco Mandujano Reyes, Ting Fung Ma, Ian P. McGahan, Daniel J. Storm, Daniel P. Walsh, Jun Zhu
Development and evaluation of the remote passive integrated transponder tag reader for customizable monitoring of wildlife Development and evaluation of the remote passive integrated transponder tag reader for customizable monitoring of wildlife
Increasing the quantity and quality of mark-reencounter data can be important when individual identification data are needed to address research or management questions. Physical recapture methods tend to be labor-intensive and therefore expensive, while remote detection methods are not easily applied to all taxa or are proprietary and thus difficult to customize. However, partnerships...
Authors
Staci M. Amburgey, Aadithya Prakash, Amy A. Yackel Adams, Shane R. Siers, Sarah J. Converse
Landscape transcriptomic analysis detects thermal stress responses and potential adaptive variation in wild brook trout (Salvelinus fontinalis) during successive heatwaves Landscape transcriptomic analysis detects thermal stress responses and potential adaptive variation in wild brook trout (Salvelinus fontinalis) during successive heatwaves
Extreme weather events, such as heatwaves, are becoming more frequent and intense as a result of climate change. Critically, such extreme weather events can be more important drivers of extirpation and selection than changes in annual or seasonal averages and they pose a particularly large threat to poikilothermic organisms. In this study, we evaluated the transcriptomic response of a...
Authors
Justin Waraniak, Sarah Batchelor, Tyler Wagner, Jason Keagy
When the wild things are: Defining mammalian diel activity and plasticity When the wild things are: Defining mammalian diel activity and plasticity
Circadian rhythms are a mechanism by which species adapt to environmental variability and fundamental to understanding species behavior. However, we lack data and a standardized framework to accurately assess and compare temporal activity for species during rapid ecological change. Through a global network representing 38 countries, we leveraged 8.9 million mammalian observations to...
Authors
Kadambari Devarajan, Mason Fidino, Zach J. Farris, Solny A. Adalsteinsson, Gabriel Andrade-Ponce, Julia Angstmann, Whitney Anthonysamy, Jesica Aquino, Addisu Asefa, Belen Avila, Larissa L. Bailey, Lyandra Maria de Sousa Barbosa, Marcela de Frias Barreto, Owain Barton, Chloe E Bates, Mayara Guimarães Beltrão, Tori Bird, Elizabeth G Biro, Francesco Bisi, Daniel Bohórquez, Mark S. Boyce, Justin S. Brashares, Grace Bullington, Phoebe Burns, Jessica Burr, Andrew R. Butler, Kendall L. Calhoun, Tien Trung Cao, Natalia Casado, Juan Camilo Cepeda-Duque, Jonathon D. Cepek, Adriano Garcia Chiarello, Merri Collins, Pedro Cordeiro-Estrela, Sebastian Costa, Giacomo Cremonesi, Bogdan Cristescu, Paula Cruz, Anna Carolina Figueiredo de Albuquerque, Carlos De Angelo, Cláudia Bueno De Campos, Liana Mara Mendes De Sena, Mario Di Bitetti, Douglas de Matos Dias, Duane R. Diefenbach, Tim S. Doherty, Thais P dos Santos, Gabriela Teixeira Duarte, Timothy M. Eppley, John Erb, Carolina Franco Esteves, Bryn Evans, Maria L.M. Falcão, Hugo Fernandes-Ferreira, John R. Fieberg, Luiz Carlos Firmino de Souza Filho, Jason Fisher, Marie-Josee Fortin, George A. Gale, Travis Gallo, Laken S Ganoe, Rony Garcia-Anleu, Kaitlyn M. Gaynor, Tiziana A. Gelmi-Candusso, Phillys N. Gichuru, Quimey Gomez, Austin M. Green, Luiza Neves Guimarães, Jeffrey D. Haight, Lavendar R. Harris, Zachary D. Hawn, Jordan Heiman, Huy Quoc Hoang, Sarah Huebner, Fabiola Iannarilli, María Eugenia Iezzi, Jacob S. Ivan, Kodi J. Jaspers, Mark J Jordan, Jason Kamilar, Mamadou Kane, Mohammad Hosein Karimi, Marcella J. Kelly, Michel T. Kohl, William P. Kuvlesky, Andrew Ladle, Rachel N. Larson, Quy Tan Le, Duy Le, Van Son Le, Elizabeth W. Lehrer, Patrick E Lendrum, Jesse S. Lewis, Andrés Link, Diego J. Lizcano, Jason V. Lombardi, Robert Long, Eva López-Tello, Camile Lugarini, David Lugo, Paula MacKay, Maria Madadi, Rodolfo Assis Magalhães, Seth B. Magle, Ludmila Hufnagel Regis Diniz Maia, Salvador Mandujano, Taisiia Marchenkova, Paulo Henrique Marinho, Laurie Marker, Julia Martinez Pardo, Adriano Martinoli, Rodrigo Lima Massara, Juliana Masseloux, Dina Matiukhina, Amy E. Mayer, Luis Mazariegos, Maureen R. McClung, Alex McInturff, Darby McPhail, Amy Mertl, Christopher R. Middaugh, David Miller, David Mills, Dale Miquelle, Vivianna Miritis, Remington J. Moll, Peter K. Molnar, Robert Montgomery, Toni Lyn Morelli, Alessio Mortelliti, Rachael I. Mueller, Anna S. Mukhacheva, Kayleigh Mullen, Asia Murphy, Vance Nepomuceno, Dusit Ngoprasert, An Nguyen, Thanh Van Nguyen, Van Thai Nguyen, Hoa Anh Nguyen Quang, Rob Nipko, Ana Clarissa Costa Nobre, Joseph Northrup, Megan A. Owen, Adriano Pereira Paglia, Meredith S. Palmer, Gabriela Palomo-Munoz, Lain E. Pardo, Chrystina Parks, Ana Maria de Oliveira Paschoal, Brent Patterson, Agustin Paviolo, Liba Pejchar, Mary E. Pendergast, Humberto L. Perotto-Baldivieso, Timofei Petrov, Mairi K.P. Poisson, Daiana Jeronimo Polli, Morteza Pourmirzai, Alexander Reebin, Katie R. Remine, Lindsey Rich, Christopher S. Richardson, Facundo Robino, Daniel G Rocha, Fabiana Lopes Rocha, Flávio Henrique Guimarães Rodrigues, Adam T. Rohnke, Travis J. Ryan, Carmen M. Salsbury, Heather A. Sander, Nadia Maria da Cruz Santos-Cavalcante, Cagan H. Sekercioglu, Ivan Seryodkin, Dede Hendra Setiawan, Shabnam Shadloo, Mahsa Shahhosseini, Graeme Shannon, Catherine J. Shier, G. Bradley Smith, Tom Snyder, Rahel Sollmann, Kimberly L. Sparks, Kriangsak Sribuarod, Colleen Cassady St. Claire, Theodore Stankowich, Robert Steinmetz, Cassondra J Stevenson, Sunarto Sunarto, Thilina D. Surasinghe, Svetlana V. Sutyrina, Ronald R. Swaisgood, Atie Taktehrani, Kanchan Thapa, Matthew Thorton, Andrew Tilker, Mathias W. Tobler, Van Bang Tran, Jody Tucker, Russell C. Van Horn, Juan S. Vargas-Soto, Karen L. Velásquez, Jan Venter, Eduardo M. Venticinque, Stijn Verschueren, Erin Wampole, Darcy J. Watchorn, Oliver R. Wearn, Katherine Weiss, Alejandro Welschen, Febri Anggriawan Widodo, Jacque Williamson, Andreas Wilting, George Wittemyer, Arturo Zavaleta, Amanda J. Zellmer, Brian Daniel Gerber
Prevalence of pelagic diatoms and harmful algae in tellinid bivalve diets during record low sea ice in the Pacific Arctic determined by DNA metabarcoding Prevalence of pelagic diatoms and harmful algae in tellinid bivalve diets during record low sea ice in the Pacific Arctic determined by DNA metabarcoding
Understanding changes at the base of the marine food web in the rapidly transforming Arctic is essential for predicting and evaluating ecosystem dynamics. The northern Bering Sea experienced record low sea ice in 2018, followed by the second lowest in 2019, highlighting the urgency of the issue for this region. In this study, we investigated the diet of the clam Macoma calcarea in the...
Authors
Chelsea W. Koch, Sarah A. Sonsthagen, Lee W. Cooper, Jacqueline M. Grebmeier, Ann Elizabeth Riddle-Berntsen, Robert S. Cornman