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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. 

 

**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

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Predicting responses to climate change using a joint species, spatially dependent physiologically guided abundance model Predicting responses to climate change using a joint species, spatially dependent physiologically guided abundance model

Predicting the effects of warming temperatures on the abundance and distribution of organisms under future climate scenarios often requires extrapolating species–environment correlations to climatic conditions not currently experienced by a species, which can result in unrealistic predictions. For poikilotherms, incorporating species' thermal physiology to inform extrapolations under...
Authors
Christopher A. Custer, Joshua S. North, Erin M. Schliep, Michael R. Verhoeven, Gretchen J.A. Hansen, Tyler Wagner

Fish beta diversity associated with hydrologic and anthropogenic disturbance gradients in contrasting stream flow regimes Fish beta diversity associated with hydrologic and anthropogenic disturbance gradients in contrasting stream flow regimes

Understanding the role of hydrologic variation in structuring aquatic communities is crucial for successful conservation and sustainable management of native freshwater biodiversity. Partitioning beta diversity into the additive components of spatial turnover and nestedness can provide insight into the forces driving variability in fish assemblages across stream flow regimes. We examined...
Authors
John Tyler Fox, Cyndy Loftin

Documenting historical anchorworm parasitism of introduced warmwater fishes in the Willamette River Basin, Oregon Documenting historical anchorworm parasitism of introduced warmwater fishes in the Willamette River Basin, Oregon

Anchorworms (Lernaea spp.) are freshwater parasitic copepods that use a wide range of hosts. Yet little is known about their prevalence, distribution, and which species are their primary fish hosts in the state of Oregon. Institutional fish collections serve as banks which allow investigators to look at historical fish specimens and ascertain their health status at the time of their...
Authors
Elena Eberhardt, Christina Amy Murphy, William J. Gerth, Peter Konstantinidis, Ivan Arismendi

Fish size structure analysis via ordination: A visualization aid Fish size structure analysis via ordination: A visualization aid

Objective Visual aids like length-frequency histograms are widely used to examine fish population status and trends; however, comparing multiple histograms simultaneously becomes cumbersome and inefficient. Complicating matters further, overlaying covariates on histograms to highlight connections with length frequencies can be challenging. An alternative, and the subject of this...
Authors
Leandro E. Miranda

Fish assemblage and functional trait responses to small-dam removal Fish assemblage and functional trait responses to small-dam removal

Dams are one of the greatest threats to freshwater biodiversity and efforts to remove dams to restore riverine systems are increasing. However, dam-removal studies have primarily focused on taxonomic responses to large dam removals with little work on the functional trait responses of fish to small-dam removals; such a focus limits the application of results in regions with different...
Authors
Luke Max Bower, C. A. Marion, M. K. Scott, Kevin Kubach, Andrew Gelder

Retention of p-Chip microtransponders and posttagging survival of small-bodied stream fishes Retention of p-Chip microtransponders and posttagging survival of small-bodied stream fishes

Objective Obtaining demographic rates often requires complex open-population capture–mark–recapture (CMR) study designs. Conducting such studies for small-bodied fishes has been limited in part by excessive mortality after tagging procedures and poor tag retention. As new tag types emerge, information regarding fish survival and tag retention over varying time scales may benefit resource...
Authors
Joseph Spooner, Jonathan J. Spurgeon

Helpers show plasticity in their responses to breeder turnover Helpers show plasticity in their responses to breeder turnover

Nonbreeding helpers can greatly improve the survival of young and the reproductive fitness of breeders in many cooperatively breeding species. Breeder turnover, in turn, can have profound effects on dispersal decisions made by helpers. Despite its importance in explaining group size and predicting the population demography of cooperative breeders, our current understanding of how...
Authors
David Edward Ausband, Sarah B. Bassing

Delayed positive responses of snowshoe hares to prescribed burning in a fire-adapted ecosystem Delayed positive responses of snowshoe hares to prescribed burning in a fire-adapted ecosystem

Wildlife populations near the periphery of a species’ range are vulnerable to changes in habitat conditions and climate. However, habitat management and maintenance can help with the persistence of these susceptible populations. Snowshoe hare (Lepus americanus) populations near the southern extent of their range are at risk of extirpation because of changing winter conditions, coupled...
Authors
Laura C. Gigliotti, Emily S. Boyd, Duane R. Diefenbach

Variation in Cooper's Hawk (Accipiter cooperii) eggshell thickness: DDT, measurement methods, and location Variation in Cooper's Hawk (Accipiter cooperii) eggshell thickness: DDT, measurement methods, and location

We collected Cooper's Hawk (Accipiter cooperii) eggshells from nests in the Tucson, Arizona, USA, area in the 1990s incidental to other activities and compared them to pre-DDT Cooper's Hawk eggshells (119 museum specimens from 14 states, 1894–1939) ranging from 0.284–0.402 mm (x̄= 0.348 mm, SD = 0.0243) and we also compared them to reported thicknesses found in the literature. We found...
Authors
G. M. Santolo, Clint W. Boal

Designing count-based studies in a world of hierarchical models Designing count-based studies in a world of hierarchical models

Advances in hierarchical modeling have improved estimation of ecological parameters from count data, especially those quantifying population abundance, distribution, and dynamics by explicitly accounting for observation processes, particularly incomplete detection. Even hierarchical models that account for incomplete detection, however, cannot compensate for data limitations stemming...
Authors
Quresh S. Latif, Jonathon Joseph Valente, Alison Johnston, Kayla L. Davis, Frank A. Fogarty, Adam W. Green, Gavin M. Jones, Matthias Leu, Nicole L. Michel, David C. Pavlacky, Elizabeth A. Rigby, Clark S. Rushing, Jamie S. Sanderlin, Morgan W. Tingley, Qing Zhao

Widespread occupancy of the endangered northern myotis on northeastern Atlantic Coastal Plain islands Widespread occupancy of the endangered northern myotis on northeastern Atlantic Coastal Plain islands

Northern myotis Myotis septentrionalis are one of the bat species most affected by white-nose syndrome (WNS), and disease-induced declines may cause compounding effects when combined with other threats such as habitat loss and fragmentation. Recent evidence suggests that peripheral populations are persisting in post-WNS years; however, the environmental factors that influence the...
Authors
Samantha Hoff, Brittany A. Mosher, Mandy Watson, Luanne Johnson, Elizabeth Olson, Danielle O’Dell, Casey J. Pendergast, Daniel A. Bogan, Carl J. Herzog, Wendy Christine Turner

Validation of a real-time quaking-induced conversion (RT-QuIC) assay protocol to detect chronic wasting disease using rectal mucosa of naturally infected, pre-clinical white-tailed deer (Odocoileus virginianus) Validation of a real-time quaking-induced conversion (RT-QuIC) assay protocol to detect chronic wasting disease using rectal mucosa of naturally infected, pre-clinical white-tailed deer (Odocoileus virginianus)

Chronic wasting disease (CWD) is a fatal prion disease of cervids spreading across North America. More effective mitigation efforts may require expansion of the available toolkit to include new methods that provide earlier antemortem detection, higher throughput, and less expense than current immunohistochemistry (IHC) methods. The rectal mucosa near the rectoanal junction is a site of...
Authors
Robert B. Piel III, Susan E. Veneziano, Eric M. Nicholson, Daniel P. Walsh, Aaron D. Lomax, Tracy A. Nichols, Christopher M. Seabury, David A. Schneider
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