Publications
Browse publications authored by our scientists. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
Filter Total Items: 5011
Behavioral trade-offs and multitasking by elk in relation to predation risk from Mexican gray wolves Behavioral trade-offs and multitasking by elk in relation to predation risk from Mexican gray wolves
Predator non-consumptive effects (NCE) can alter prey foraging time and habitat use, potentially reducing fitness. Prey can mitigate NCEs by increasing vigilance, chewing-vigilance synchronization, and spatiotemporal avoidance of predators. We quantified the relationship between Mexican wolf (Canis lupus baileyi) predation risk and elk (Cervus canadensis) behavior. We conducted...
Authors
Zachary J. Farley, Cara J. Thompson, Scott T. Boyle, Nicole M. Tatman, James W. Cain
Melded integrated population models Melded integrated population models
Integrated population models provide a framework for assimilating multiple datasets to understand population dynamics. Understanding drivers of demography is key to improving wildlife management, and integrated population models have informed conservation practices for many species of conservation concern. Motivated by multiple surveys of lesser prairie-chicken (Tympanuchus...
Authors
Justin J. Van Ee, Christian A. Hagen, David C. Pavlacky, David A. Haukos, Andrew J . Lawrence, Ashley M Tanner, Blake A. Grisham, Kent A. Fricke, Liza G. Rossi, Grant M. Beauprez, Kurt E. Kuklinski, Russell Martin, Matthew D. Koslovsky, Troy B. Rintz, Mevin B. Hooten
Genetic analysis of harvest samples reveals population structure in a highly mobile generalist carnivore Genetic analysis of harvest samples reveals population structure in a highly mobile generalist carnivore
Delineating wildlife population boundaries is important for effective population monitoring and management. The bobcat (Lynx rufus) is a highly mobile generalist carnivore that is ecologically and economically important. We sampled 1225 bobcats harvested in South Dakota, USA (2014–2019), of which 878 were retained to assess genetic diversity and infer population genetic structure using...
Authors
Stuart C. Fetherston, Robert Charles Lonsinger, Lora B. Perkins, Chadwick P. Lehman, Jennifer R. Adams, Lisette P. Waits
Evaluating the effectiveness of joint species distribution modeling for fresh water fish communities within large watersheds Evaluating the effectiveness of joint species distribution modeling for fresh water fish communities within large watersheds
Accurately predicting species’ distributions is critical for the management and conservation of fish and wildlife populations. Joint Species Distribution Models (JSDMs) account for dependencies between species often ignored by traditional species distribution models. We evaluated how a JSDM approach could improve predictive strength for stream fish communities within large watersheds...
Authors
Paul McLaughlin, Kevin Krause, Kelly O. Maloney, Taylor Woods, Tyler Wagner
Development and validation of a GT-seq panel for genetic monitoring in a threatened species using minimally invasive sampling Development and validation of a GT-seq panel for genetic monitoring in a threatened species using minimally invasive sampling
Minimally invasive samples are often the best option for collecting genetic material from species of conservation concern, but they perform poorly in many genomic sequencing methods due to their tendency to yield low DNA quality and quantity. Genotyping-in-thousands by sequencing (GT-seq) is a powerful amplicon sequencing method that can genotype large numbers of variable-quality samples...
Authors
Molly J. Garrett, Stacey A. Nerkowski, Shannon Kieran, Nathan R. Campbell, Soraia Barbosa, Courtney J. Conway, Paul A. Hohenlohe, Lisette P. Waits
Large-scale assessment of genetic structure to assess risk of populations of a large herbivore to disease Large-scale assessment of genetic structure to assess risk of populations of a large herbivore to disease
Chronic wasting disease (CWD) can spread among cervids by direct and indirect transmission, the former being more likely in emerging areas. Identifying subpopulations allows the delineation of focal areas to target for intervention. We aimed to assess the population structure of white-tailed deer (Odocoileus virginianus) in the northeastern United States at a regional scale to inform...
Authors
W. David Walter, Alberto Fameli, Kelly Russo-Petrick, Jessie E. Edson, Christopher S. Rosenberry, Krysten L. Schuler, Michael J. Tonkovich
Evaluation of DNA yield from various tissue and sampling sources for use in single nucleotide polymorphism panels Evaluation of DNA yield from various tissue and sampling sources for use in single nucleotide polymorphism panels
Genetics studies are used by wildlife managers and researchers to gain inference into a population of a species of interest. To gain these insights, microsatellites have been the primary method; however, there currently is a shift from microsatellites to single nucleotide polymorphisms (SNPs). With the different DNA requirements between microsatellites and SNPs, an investigation into...
Authors
David L. Pearce, Jessie E. Edson, Chris S. Jennelle, W. David Walter
An experimental study of benthic habitat selection in yellow-phase American eels (Anguilla rostrata) An experimental study of benthic habitat selection in yellow-phase American eels (Anguilla rostrata)
In a laboratory experiment, we quantified microhabitat use of small yellow-phase American eels (Anguilla rostrata, n = 130, 224–338 mm TL) conditional on five benthic substrate types common to rivers within their geographic range. During nine, 4-day trials replicated with three aquaria, American eels were given a choice to burrow into five equally available benthic substrates: cobble (90...
Authors
Melissa Braham, S.A. Welsh, Dustin M. Smith
Unexpected effect of geographic origin on post-translocation survival in a long-lived reptile, the gopher tortoise Unexpected effect of geographic origin on post-translocation survival in a long-lived reptile, the gopher tortoise
Mitigation translocations move wildlife from specific areas due to conflict with humans over land use at the site. A critical decision when carrying out mitigation translocation is the acceptable distance across which animals can be moved. This decision trades off logistical expediency of unrestricted translocation with the risk of reducing translocation success due to environmental...
Authors
Kevin J. Loope, Rebecca A. Cozad, Derek. B. Breakfield, Matthew J. Aresco, Elizabeth Ann Hunter
Vulnerability assessment of groundwater influenced ecosystems in the Northeastern United States Vulnerability assessment of groundwater influenced ecosystems in the Northeastern United States
Groundwater-influenced ecosystems (GIEs) are increasingly vulnerable due to groundwater extraction, land-use practices, and climate change. These ecosystems receive groundwater inflow as a portion of their baseflow or water budget, which can maintain water levels, water temperature, and chemistry necessary to sustain the biodiversity that they support. In some systems (e.g., springs...
Authors
Shawn D. Snyder, Cyndy Loftin, Andrew S. Reeve
Prototyping structured decision making for water resource management in the San Francisco Bay-Delta Prototyping structured decision making for water resource management in the San Francisco Bay-Delta
A structured decision making (SDM) approach can help evaluate tradeoffs between conservation and human-benefit objectives by fostering communication and knowledge transfer among stakeholders, decision makers, and the public. However, the process is iterative and completing the full process may take years. It can be difficult to initiate an SDM effort when problems seem insurmountable...
Authors
James Peterson, Erin McCreless, Adam Duarte, Patti Wohner, Scott Hamilton, Josue Medellin-Azuara, Alvar Escriva-Boue
A video monitoring and computational system for estimating migratory juvenile fish abundance in river systems A video monitoring and computational system for estimating migratory juvenile fish abundance in river systems
Diadromous fishes migrate between marine and fresh waters for reproduction. For anadromous species, which spawn in freshwater, improved access to freshwater spawning and nursery habitats and ability of juveniles to emigrate to the ocean may support population recovery. Despite the potentially enormous influence of early life stage survival on adult population size, managers and...
Authors
Meghna N. Marjadi, Sidney Batchelder, Ryan Govostes, Allison H. Roy, John J. Sheppard, Meghan-Grace Slocombe, Joel K. Llopiz