Daniel is a plant ecophysiologist and evolutionary ecologist studying how populations respond to global climate change. He is a Research Ecologist with USGS and works with the BLM's Native Plant Program where he studies adaptive traits of native plants. He also conducts research throughout the desert southwest and in alpine areas of Colorado, Mexico, and Japan.
Daniel aims to identify solutions and strategies to enhance conservation efforts and equip managers with the tools necessary to respond to global climate change. His research bridges ecological experimentation with modern restoration, molecular, and ecophysiological methods to understand native plant adaptation primarily in arid and semi-arid dryland ecosystems. Daniel also studies the evolutionary ecology of invasive species and their impacts in protected systems, including lands managed by the NPS, BLM, USFWS, and USFS. Congruent with his studies in global change, Daniel is also interested in the social dimensions of decision-making in management and conservation.
Professional Experience
Research Ecologist, United States Geological Survey, Southwest Biological Science Center, Moab, Utah, and Tucson, Arizona, 2017 - present
Fellow, National Park Service Young Leader in Climate Change, Saguaro National Park and Sonoran Desert Network, Arizona, 2015
Research Fellow, Water UCI Initiative, University of California, Irvine, 2014 - 2015
Fellow, NSF East Asia Pacific Summer Institute, Hokkaido University and Daisetsuzan National Park, Japan, 2014
Biological Science Technician, NPS Sonoran Desert Network, Tucson, Arizona, 2010 - 2011
Conservation and Land Management Intern, Bureau of Land Management, Vernal Field Office, Utah, 2009
Student Conservation Association Intern, Buenos Aires National Wildlife Refuge, Arizona, 2008
Research Fellow, Rocky Mountain Biological Laboratory, Colorado, 2008
Biological Anthropology Intern, American Museum of National History, New York, 2007
Education and Certifications
Ph.D., Ecology & Evolutionary Biology, 2017- University of California, Irvine
Advised by Travis E. HuxmanM.S., Environmental Systems, 2013 - University of California, Merced
Advised by Lara M. KueppersB.A., Biological Anthropology, 2008 - New York University
Science and Products
Restoration research actions to address rapid change in drylands: Insights from the Colorado Plateau
Perspectives on challenges and opportunities at the restoration-policy interface in the U.S.A.
Evolutionary dynamics inform management interventions of a hanging garden obligate, Carex specuicola
Spatially explicit management of genetic diversity using ancestry probability surfaces
Supporting the development and use of native plant materials for restoration on the Colorado Plateau (Fiscal Year 2021 Report)
Knowledge sharing for shared success in the decade on ecosystem restoration
Asynchronous flowering patterns in saguaro cacti (Carnegiea gigantea)
A common garden super-experiment: An impossible dream to inspire possible synthesis
How to increase the supply of native seed to improve restoration success: The US native seed development process
Demographic modeling informs functional connectivity and management interventions in Graham’s beardtongue
Solutions in microbiome engineering: Prioritizing barriers to organism establishment
Climate change and other factors influencing the saguaro cactus
Non-USGS Publications**
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
The iconic giant saguaro cactus in the Sonoran Desert
Informing seed transfer guidelines and native plant materials development: Research supporting restoration across the Colorado Plateau and beyond
Genetics for Western Restoration and Conservation (GWRC)
Genomic Research Supporting Western Conservation
Penstemon grahamii genetic data from a dryland region of the western United States
Astragalus species complex genetic data from southeast Utah (Grand County and San Juan County), USA
Seasonal ecophysiological measurement data from December 2015 to September 2016, southeastern Utah
'Viva' native plant material data in support of restoration and conservation
Science and Products
- Publications
Filter Total Items: 32
Restoration research actions to address rapid change in drylands: Insights from the Colorado Plateau
The rapid intensification of ecological extremes in response to climate change and human land use is perhaps nowhere more apparent than in drylands, including the semiarid region of the Colorado Plateau in the southwestern United States. Here, we describe research directions to aid in the restoration of Colorado Plateau ecosystems during the UN Decade on Ecosystem Restoration (2021–2030) that 1) aAuthorsKristina E. Young, Brooke Bossert Osborne, Michala Lee Phillips, Daniel E. WinklerPerspectives on challenges and opportunities at the restoration-policy interface in the U.S.A.
As we advance into the United Nations Decade on Ecosystem Restoration, understanding the relationship between science, management, and policy is increasingly important given the paucity of research evaluating the ability of existing policy to address contemporary environmental challenges. Despite their inherent interdependence, restoration ecology as a scientific discipline, ecological restorationAuthorsElla M. Samuel, Rachel M. Mitchell, Daniel E. WinklerEvolutionary dynamics inform management interventions of a hanging garden obligate, Carex specuicola
Uncovering the historical and contemporary processes shaping rare species with complex distributions is of growing importance due to threats such as habitat destruction and climate change. Species restricted to specialized, patchy habitat may persist by virtue of life history characteristics facilitating ongoing gene flow and dispersal, but they could also reflect the remnants of formerly widespreAuthorsKenneth James Chapin, Matthew R Jones, Daniel E. Winkler, Glenn Rink, Robert MassattiSpatially explicit management of genetic diversity using ancestry probability surfaces
1. Ecological restoration and conservation efforts are increasing worldwide and the management of intraspecific genetic variation in plants and animals, an important component of biodiversity, is increasingly valued. As a result, tailorable, spatially explicit approaches to map genetic variation are needed to support decision-making and management frameworks related to the recovery of threatened aAuthorsRobert Massatti, Daniel E. WinklerSupporting the development and use of native plant materials for restoration on the Colorado Plateau (Fiscal Year 2021 Report)
A primary focus of the Colorado Plateau Native Plant Program (CPNPP) is to identify and develop appropriate native plant materials (NPMs) for current and future restoration projects. Multiple efforts have characterized the myriad challenges inherent in providing appropriate seed resources to enable effective, widespread restoration and have identified a broad suite of research activities to providAuthorsRobert Massatti, Daniel E. Winkler, Sasha C. Reed, Michael C. Duniway, Seth M. Munson, John B. BradfordKnowledge sharing for shared success in the decade on ecosystem restoration
The Decade on Ecosystem Restoration aims to provide the means and incentives for upscaling restoration efforts worldwide. Although ecosystem restoration is a broad, interdisciplinary concept, effective ecological restoration requires sound ecological knowledge to successfully restore biodiversity and ecosystem services in degraded landscapes.We emphasize the critical role of knowledge and data shaAuthorsEmma Ladouceur, Nancy Shackelford, Karma Bouazza, Lars Brudvig, Anna Bucharova, Timo Conradi, Todd E. Erickson, Magda Garbowski, Kelly Garvy, W. Stanley Harpole, Holly P. Jones, Tiffany Knight, Mlungele M. Nsikani, Gustavo B. Paterno, Katharine Suding, Vicky M. Temperton, Péter Török, Daniel E. Winkler, Johnathan M. ChaseAsynchronous flowering patterns in saguaro cacti (Carnegiea gigantea)
The saguaro cactus (Carnegiea gigantea [Engelm.] Britton & Rose) is a keystone species endemic to the Sonoran Desert of northern Mexico and the southwestern United States. The saguaro produces large white flowers near its stem apex (crown) during April–June, which bloom at night and close the following day. In 1924, Duncan Johnson reported that saguaro floral buds are likely to have an asymmetricaAuthorsTheresa Foley, Don E. Swann, Guadalupe Sotelo, Nicholas Perkins, Daniel E. WinklerA common garden super-experiment: An impossible dream to inspire possible synthesis
Global change threatens plant diversity and disrupts its interrelationship with ecosystem structure and function. This disruption in turn undermines confidence in the knowledge ecologists produce, and whether it will translate into multidisciplinary research settings or guide the effective management of natural lands.To address this challenge, ecology needs to consider the interactions between difAuthorsTravis E. Huxman, Daniel E. Winkler, Kailen A. MooneyHow to increase the supply of native seed to improve restoration success: The US native seed development process
With the United Nations Decade on Ecosystem Restoration, restoration of damaged ecosystems is turning into a global movement. Restoration actions that are not based on science and an understanding of ecosystem function can thwart desired restoration outcomes at best and cause further damage to ecosystems at worst. Restoration often includes revegetation using seed. Where we source seed for restoraAuthorsMolly Lutisha Mccormick, Amanda N. Carr, Robert Massatti, Daniel E. Winkler, Patricia De Angelis, Peggy OlwellDemographic modeling informs functional connectivity and management interventions in Graham’s beardtongue
Functional connectivity (i.e., the movement of individuals across a landscape) is essential for the maintenance of genetic variation and persistence of rare species. However, illuminating the processes influencing functional connectivity and ultimately translating this knowledge into management practice remains a fundamental challenge. Here, we combine various population structure analyses with paAuthorsMatthew Richard Jones, Daniel E. Winkler, Robert MassattiSolutions in microbiome engineering: Prioritizing barriers to organism establishment
Microbiome engineering is increasingly being employed as a solution to challenges in health, agriculture, and climate. Often manipulation involves inoculation of new microbes designed to improve function into a preexisting microbial community. Despite, increased efforts in microbiome engineering inoculants frequently fail to establish and/or confer long-lasting modifications on ecosystem function.AuthorsMichaeline B.N. Albright, Stilianos Louca, Daniel E. Winkler, Kelli L. Feeser, Sarah-Jane Haig, Katrine L. Whiteson, Joanne B. Emerson, John M. DunbarClimate change and other factors influencing the saguaro cactus
The saguaro cacti (Carnegiea gigantea [Engelm.] Britton & Rose) is one of the world’s most iconic plants and a symbol of the desert Southwest. It is the namesake of Saguaro National Park, which was created (initially as a national monument) in 1933 to study, interpret, and protect the “giant cactus” and other unique Sonoran Desert species. Research on saguaros over the past century has revealed muAuthorsDon E. Swann, Daniel E. Winkler, Joshua L. Conver, Theresa FoleyNon-USGS Publications**
Winkler, D.E., Brooks, E. Tracing Extremes across Iconic Desert Landscapes: Socio-Ecological and Cultural Responses to Climate Change, Water Scarcity, and Wildflower Superblooms. Human Ecology (2020). https://doi.org/10.1007/s10745-020-00145-5
Kattge, J., Bönisch, G., Díaz, S., Lavorel, S., Prentice, I. C., Leadley, P., ... Winkler, D. et al. (2020). TRY plant trait database–enhanced coverage and open access. Global Change Biology. 26(1):119-188.
Winkler DE, Lin MY, Delgadillo J, Chapin KJ, Huxman TE. 2019. Early life history responses and phenotypic shifts in a rare endemic plant responding to climate change. Conservation Physiology 7(1): coz076. doi: 10.1093/conphys/coz076
Winkler, D. E., Chapin, K. J., François, O., Garmon, J. D., Gaut, B. S., & Huxman, T. E. (2019). Multiple introductions and population structure during the rapid expansion of the invasive Sahara mustard (Brassica tournefortii). Ecology and Evolution, 9(14), 7928-7941.
Winkler, D. E., Lubetkin, K. C., Carrell, A. A., Jabis, M. D., Yang, Y., & Kueppers, L. M. 2019. Responses of alpine plant communities to climate warming. In: Mohan, J.E. (ed), Ecosystem Consequences of Soil Warming, pp. 297-346. Academic Press.
Mohan, J. E., Wadgymar, S. M., Winkler, D. E., Anderson, J. T., Frankson, P. T., Hannifin, R., ... & Melillo, J. M. 2019. Plant reproductive fitness and phenology responses to climate warming: Results from native populations, communities, and ecosystems. In: Mohan, J.E. (ed), Ecosystem Consequences of Soil Warming, pp. 61-102. Academic Press.
Winkler, D. E., Butz, R. J., Germino, M. J., Reinhardt, K., & Kueppers, L. M. (2018). Snowmelt timing regulates community composition, phenology, and physiological performance of alpine plants. Frontiers in plant science, 9, 1140.
Chapin, K. J., Winkler, D. E., Wiencek, P., & Agnarsson, I. (2018). Island biogeography and ecological modeling of the amblypygid Phrynus marginemaculatus in the Florida Keys archipelago. Ecology and evolution, 8(18), 9139-9151.
Winkler, D. E., J. R. Gremer, K. J. Chapin, M. Kao, and T. E. Huxman. 2018. Rapid alignment of functional trait variation with locality across the invaded range of Sahara mustard (Brassica tournefortii). American Journal of Botany 105(7): 1188–1197.
Kudo G, Y Aoshima, R Miyata, DE Winkler. 2018. Altered morphologies and physiological compensation in a rapidly expanding dwarf bamboo in alpine ecosystems. Arctic, Antarctic, and Alpine Research 50(1): e1463733. doi: 10.1080/15230430.2018.1463733.
Winkler, D. E., Conver, J. L., Huxman, T. E. and Swann, D. E. 2018. The interaction of drought and habitat explain space–time patterns of establishment in saguaro (Carnegiea gigantea). Ecology 99(3):621-631. doi:10.1002/ecy.2124
Conver, JL, T Foley, DE Winkler, DE Swann. 2017. Demographic changes over > 70 yr in a population of saguaro cacti (Carnegiea gigantea) in the northern Sonoran Desert. Journal of Arid Environments 139:41–48. doi: 10.1016/j.jaridenv.2016.12.008
Kudo G, Y Kawai, Y Amagai, DE Winkler. 2017. Degradation and recovery of an alpine plant community: experimental removal of an encroaching dwarf bamboo. Alpine Botany 127:75–83. doi: 10.1007/s00035-016-0178-2
Winkler DE, Y Amagai, TE Huxman, M Kaneko, G Kudo. 2016. Seasonal dry-down rates and high stress tolerance promote bamboo invasion above and below treeline. Plant Ecology 217(10): 1219–1234. doi: 10.1007/s11258-016-0649-y
Winkler, D. E., Chapin, K. J., & Kueppers, L. M. (2016). Soil moisture mediates alpine life form and community productivity responses to warming. Ecology, 97(6), 1553-1563.
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
- Science
The iconic giant saguaro cactus in the Sonoran Desert
The saguaro cactus (Carnegiea gigantea) is a keystone species that grows only in the Sonoran Desert of northern Mexico and the southwestern United States. The USGS’ Southwest Biological Science Center is working to better understand the species’ biological features, its role as a keystone species that supports greater than 100 other plant and animal species, and its responses to climate change...Informing seed transfer guidelines and native plant materials development: Research supporting restoration across the Colorado Plateau and beyond
As restoration needs for natural landscapes grow due to higher frequency and/or intensity disturbances, pressure from invasive species, and impacts resulting from changing climates, considerable time and resources are being invested to guide the development and deployment of native plant materials (NPMs). Across lower elevations of the Colorado Plateau, a region composed primarily of public land...Genetics for Western Restoration and Conservation (GWRC)
Research using genetic principles, methods, and data provides critical information for restoration and conservation science. Genetic research may rely only upon genomic sequencing techniques, which generate abundant, genome-wide DNA sequences that can provide a glimpse into a species’ evolutionary history and adaptations. Genetic research may also look at an organism’s physical traits to...Genomic Research Supporting Western Conservation
In the western United States (U.S.), there are many regionally restricted, rare species resulting from complex demographic and ecological processes through time. In addition to the inherent risks associated with being rare (i.e., having few individuals spread over a limited area that could be disproportionately affected by chance events), anthropogenic disturbances are increasing in magnitude... - Data
Penstemon grahamii genetic data from a dryland region of the western United States
These data were compiled to investigate the evolutionary history of Graham's beardtongue (Penstemon grahamii). Objective(s) of our study were to determine the evolutionary history of P. grahamii, including ancestral population sizes, the history of population divergences, and historical connectivity. In addition, we characterized population structure, genetic diversity summary statistics, and landAstragalus species complex genetic data from southeast Utah (Grand County and San Juan County), USA
These data were compiled to investigate the evolutionary history of Astragalus iselyi, A. sabulosus var. sabulosus, and A. sabulosus var. vehiculus. The data release consists of six text files. One file is a bash script (astragalus_MLE_msms.sh) for generating simulated genetic data. Four files contain individual-level (astragalus.fasta, astragalus.nothin.recode.vcf, astragalus.recode.vcf) or populSeasonal ecophysiological measurement data from December 2015 to September 2016, southeastern Utah
These data were compiled to investigate differentiation in physiological activity varies through time for different functional groups. These include the seasonal progress of 13 plant species representing perennial C3 shrub, C3 grass, C4 grass, and annual forb functional groups of the Colorado Plateau, USA. These data can be used to test for differences in carbon assimilation strategies (SeasonalEc'Viva' native plant material data in support of restoration and conservation
These data were compiled to investigate the evolutionary history of Hilaria jamesii, Hilaria mutica, and Hilaria rigida. The data release consists of two tab delimited text files that may be used to infer population structure (viva_structure.stru) or relationships among sampling localities (viva.phylip). Files record genetic variation on an individual (.stru) or sampling locality (.phylip) level. - Multimedia
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