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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42975

A hierarchical approach for finding undiscovered populations of an endangered bumble bee A hierarchical approach for finding undiscovered populations of an endangered bumble bee

Understanding the distributions of rare species is necessary to guide monitoring and inform species recovery efforts. The rusty patched bumble bee (RPBB; Bombus affinis, Cresson) is an endangered species with an extant, known distribution centered around urban areas of the Midwestern United States. We tested a novel approach for finding undocumented RPBBs outside of urban centers and...
Authors
Clint Otto, Alma Christa Schrage, Audrey Claire Lothspeich, Larissa L. Bailey, Tamara Smith, Robert Planman, Judy Cardin, Kristen S. Ellis, Bethany Dennis, Ralph Grundel

Modeling chronic wasting disease transmission risk in mule deer related to habitat characteristics Modeling chronic wasting disease transmission risk in mule deer related to habitat characteristics

Chronic wasting disease (CWD) is a prion disease of cervids that spreads to uninfected individuals through direct transmission (contact with infected individuals), vertical transmission (from mother to offspring), or indirect transmission (exposure to contaminated environments). The risk of indirect transmission is unevenly distributed on the landscape, and risk levels are expected to be
Authors
Erica Meta Christensen, Nathan J. Kleist, David R. Edmunds, Julie A. Heinrichs, D. Joanne Saher, Ashley L. Whipple, Melia DeVivo, Cameron L. Aldridge

Using structured decision-making to develop a communications strategy for the U.S. Geological Survey Cooperative Research Units Program Using structured decision-making to develop a communications strategy for the U.S. Geological Survey Cooperative Research Units Program

Communication regarding the mission of the U.S. Geological Survey (USGS) Cooperative Research Units Program (CRU) can take many forms, yet clear and concise messaging for various audiences is critical to highlight program accomplishments and increase visibility. Before the work described in this report, CRU did not have a communication strategy; therefore, CRU leadership supported a...
Authors
Kelly Filer Robinson, Sarah Nelson Sells, Conor P. McGowan, Elise R. Irwin

GT-Seq panel development for species identification and parentage analysis of closely related hybridising Scaphirhynchus sturgeons GT-Seq panel development for species identification and parentage analysis of closely related hybridising Scaphirhynchus sturgeons

Hatchery supplementation is vital for conserving dwindling fish populations. Effective augmentation requires distinguishing hatchery-origin from wild individuals and accurately identifying species, particularly in systems where closely related species coexist. Genetic monitoring is key to quantifying genetic differences, but conventional markers do not distinguish hybrids, especially...
Authors
Junman Huang, Richard Flamio Jr., Nathan R. Campbell, Aaron J. DeLonay, Amy C. Buhman, Edward J. Heist

Cumulative effects of multiple stressors on marine mammals: Elephant seals as a model system Cumulative effects of multiple stressors on marine mammals: Elephant seals as a model system

Noise exposure is a potential stressor for free-ranging marine mammals and is often studied in the absence of other environmental factors. Here, a multi-investigator, interdisciplinary effort was undertaken to examine the response of elephant seals to multiple stressors. An integrated physiological and ecological approach was taken, including immunology, stress physiology, toxicology...
Authors
Daniel P. Costa, Rachel R. Holser, Garrett T. Shipway, Arina B. Favilla, Birgitte I. McDonald, Daphne M. Shen, Amber R. Diluzio, Sarah H. Peterson, Joshua T. Ackerman, Daniel E. Crocker

Development of a two-stage lifecycle model to inform the trap-and-haul program for Oncorhynchus kisutch (coho salmon) in the Lewis River, Washington Development of a two-stage lifecycle model to inform the trap-and-haul program for Oncorhynchus kisutch (coho salmon) in the Lewis River, Washington

Restoration of salmon populations in the upper Lewis River Basin, Washington, depends on a trap-and-haul program owing to the Lewis River Hydroelectric Project (hereinafter referred to as “Project”) operated by PacifiCorp and Cowlitz Public Utilities District (hereinafter referred to as “Utilities”), which has been a barrier to salmon passage since the 1930s. Thus, sustaining the...
Authors
John M. Plumb, Russell W. Perry

A site prioritization tool for invasive species management: Integrating diverse spatial data to improve decision making A site prioritization tool for invasive species management: Integrating diverse spatial data to improve decision making

Resource managers are tasked with protecting natural areas from invasive species with limited resources. Further, invasive management goals can vary greatly based on different management priorities specific to management agencies or taxa of interest. The site prioritization tool for invasive species management addresses these challenges by creating a platform to view and combine diverse...
Authors
Janet S. Prevéy, Cameron J. Reimer, Peder S. Engelstad, Pairsa N. Belamaric, Terri Hogan, Jillian M. LaRoe, Colter J. Mumford, Jennifer L. Sieracki, Catherine S. Jarnevich

Non-native invasive beetle alters structure of a riparian bird community in a biodiversity hotspot Non-native invasive beetle alters structure of a riparian bird community in a biodiversity hotspot

A serious emerging threat to southern California riparian ecosystems is the invasive shot hole borer (Euwallacea spp.; SHB), a non-native beetle that cultivates a pathogenic fungus that kills trees of 66 reproductive host species. We examined the response of the bird community at the Tijuana River, California, to a massive SHB infestation in 2015 using data from a Monitoring Avian...
Authors
Barbara E. Kus, Julie L. Yee, Shannon M. Mendia

Annotated bibliography of scientific research on new world screwworm (Cochliomyia hominivorax) myiasis in wildlife Annotated bibliography of scientific research on new world screwworm (Cochliomyia hominivorax) myiasis in wildlife

The New World screwworm (Cochliomyia hominivorax; NWS) is a parasitic blowfly that lays its eggs in open wounds of live, warm-blooded animals including livestock, wildlife, and potentially humans. The larvae consume living animal tissue, and if untreated, the infestation can lead to death. Although NWS was eradicated in the United States in 1966, it has been moving northward from its...
Authors
Sarah Timbie, Shelby Jo Weidenkopf, Daniel A. Grear

Line transect distance sampling and genetic analyses reveal a small but genetically diverse coastal Gopher Tortoise (Gopherus polyphemus) population Line transect distance sampling and genetic analyses reveal a small but genetically diverse coastal Gopher Tortoise (Gopherus polyphemus) population

Gopher Tortoises inhabit coastal systems, including barrier islands, across the southeastern U.S. St. Vincent National Wildlife Refuge is an uninhabited barrier island located off the coast of northwestern Florida. Although tortoises have been observed on the island, no information is available on the status of the population. We conducted a line transect distance sampling survey to...
Authors
Margaret Lamont, Irlanda Gallardo-Alanis, Diya Chordia, Michael Palandri, Ylenia Chiari

A Bayesian hierarchical modeling approach for species diversity in ecology A Bayesian hierarchical modeling approach for species diversity in ecology

Species diversity is the foundation of many ecological disciplines. This metric is often approximated using species richness and evenness, even though actual richness likely exceeds observations due to imperfect sampling methods. Estimating the “true” species richness, which includes identifying the number of missing species, has intrigued ecologists for decades. We adopted a parametric...
Authors
Song S. Qian, Mark Richard Dufour, Sabrina Jaffe, Corbin David Hilling, William D. Hintz
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