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Publications

Below is a list of WERC's peer-reviewed publications. If you are searching for a specific publication and cannot find it in this list, please contact werc_web@usgs.gov

Filter Total Items: 3707

Pacific Continental Shelf Environmental Assessment (PaCSEA): Characterization of Seasonal Water Masses within the Northern California Current System Using Airborne Remote Sensing off Northern California, Oregon, and Washington, 2011–2012 Pacific Continental Shelf Environmental Assessment (PaCSEA): Characterization of Seasonal Water Masses within the Northern California Current System Using Airborne Remote Sensing off Northern California, Oregon, and Washington, 2011–2012

Here, we use ocean color measurements (Figure 1) and sea surface temperature (SST) data collected using sensors mounted on low-flying aircraft to characterize NCCS water masses and identify patterns among seasons and between years. To accomplish this, we applied k-means clustering to measured and derived ecologically-relevant physical and bio-optical variables (SST, Chla, absorbance by...
Authors
J A Schulien, Josh Adams, Jonathan J. Felis

Habitat affinities and at-sea ranging behaviors among main Hawaiian Island seabirds: Breeding seabird telemetry, 2013–2016 Habitat affinities and at-sea ranging behaviors among main Hawaiian Island seabirds: Breeding seabird telemetry, 2013–2016

Recent Hawaiʻi state clean energy policy mandates and federal interest in developing offshore renewable energy resources have prompted unsolicited lease requests for offshore wind energy infrastructure (OWEI) to be located in ocean waters off Hawaiʻi. This study describing at-sea ranging behaviors for five seabirds was intended to provide new information on Hawaiian breeding seabird...
Authors
Josh Adams, Jonathan J. Felis, Max Czapanskiy

Does the virus cross the road? Viral phylogeographic patterns among bobcat populations reflect a history of urban development Does the virus cross the road? Viral phylogeographic patterns among bobcat populations reflect a history of urban development

Urban development has major impacts on connectivity among wildlife populations and is thus likely an important factor shaping pathogen transmission in wildlife. However, most investigations of wildlife diseases in urban areas focus on prevalence and infection risk rather than potential effects of urbanization on transmission itself. Feline immunodeficiency virus (FIV) is a directly...
Authors
Christopher P. Kozakiewicz, Christopher P. Burridge, W. Chris Funk, Meggan E. Craft, Kevin R. Crooks, Robert N. Fisher, Nicholas M. Fountain-Jones, Megan K. Jennings, Simona J Kraberger, Justin S. Lee, Lisa M. Lyren, Seth P.D. Riley, Laurel E K Serieys, Sue VandeWoude, Scott Carver

Spatiotemporal patterns of mineral and organic matter deposition across two San Francisco Bay-Delta tidal marshes Spatiotemporal patterns of mineral and organic matter deposition across two San Francisco Bay-Delta tidal marshes

Sediment deposition in tidal wetlands is a critical process that determines whether vertical growth will keep pace with sea-level rise. However, more information is needed on how sediment deposition varies spatially and temporally across wetlands, including the effects of elevation, tidal inundation, vegetation, and weather. We investigated variation in sediment deposition due to season...
Authors
Kevin Buffington, Christopher N. Janousek, Karen M. Thorne, Bruce D. Dugger

Tree mortality in blue oak woodland during extreme drought in Sequoia National Park, California Tree mortality in blue oak woodland during extreme drought in Sequoia National Park, California

Blue oak woodlands in California have been a focus of conservation concern for many years. Numerous studies have found that existing seedling and sapling numbers are inadequate to sustain current populations, and recent work has suggested that blue oak woodlands might be particularly vulnerable to a warming climate. California has recently experienced a drought of historically...
Authors
Adrian J. Das, Nicholas J. Ampersee, Anne Hopkins Pfaff, Nathan L. Stephenson, Tedmund J Swiecki, Elizabeth A Bernhardt, Patricia Haggerty, Koren R. Nydick

Introgression obscures lineage boundaries and phylogeographic history in the western banded gecko, Coleonyx variegatus (Squamata: Eublepharidae) Introgression obscures lineage boundaries and phylogeographic history in the western banded gecko, Coleonyx variegatus (Squamata: Eublepharidae)

The geomorphological formation of the Baja California peninsula and the Gulf of California is a principal driver of diversification for the reptiles of North America’s warm deserts. The western banded gecko, Coleonyx variegatus, is distributed throughout the Mojave, Sonoran and Peninsular deserts. In this study we use multilocus sequence data to address deep phylogeographic structure...
Authors
Dean H Leavitt, Bradford Hollingsworth, Robert N. Fisher, Tod W Reeder

Kelp forest monitoring at Naval Base Ventura County, San Nicolas Island, California: Fall 2017 and Spring 2018, Fourth Annual Report Kelp forest monitoring at Naval Base Ventura County, San Nicolas Island, California: Fall 2017 and Spring 2018, Fourth Annual Report

To assess and track changes to the rocky subtidal communities surrounding San Nicolas Island, the U.S. Navy entered into an agreement with the U.S. Geological Survey (USGS) in 2014 to conduct an ecological monitoring program at several sites around the island. Four permanent sites—Nav Fac 100, West End, Dutch Harbor, and Daytona 100—were established. The sites were based on ones that had...
Authors
Michael C. Kenner, Joseph A. Tomoleoni

Distribution and abundance of Least Bell’s Vireos (Vireo bellii pusillus) and Southwestern Willow Flycatchers (Empidonax traillii extimus) on the Middle San Luis Rey River, San Diego County, southern California—2019 data summary Distribution and abundance of Least Bell’s Vireos (Vireo bellii pusillus) and Southwestern Willow Flycatchers (Empidonax traillii extimus) on the Middle San Luis Rey River, San Diego County, southern California—2019 data summary

We surveyed for Least Bell’s Vireos (Vireo bellii pusillus; vireo) along the San Luis Rey River, between College Boulevard in Oceanside and Interstate 15 in Fallbrook, California (middle San Luis Rey River), in 2019, and we surveyed and conducted nest monitoring for Southwestern Willow Flycatchers (Empidonax traillii extimus; flycatcher) in a survey area where breeding had historically...
Authors
Lisa D. Allen, Barbara E. Kus

Effects of elevated sea levels and waves on southern California estuaries during the 2015–2016 El Niño Effects of elevated sea levels and waves on southern California estuaries during the 2015–2016 El Niño

The 2015–2016 El Niño provided insight into how low-inflow estuaries might respond to future climate regimes, including high sea levels and more intense waves. High waves and water levels coupled with low rainfall along the Southern California coastline provided the opportunity to examine how extreme ocean forcing impacts estuaries independently from fluvial events. From November 2015 to...
Authors
Madeleine Harvey, Sarah N Giddings, Eric D. Stein, Jeffrey A Crooks, Christine R Whitcraft, Timu W. Gallien, John L. Largier, Liesl Tiefenthaler, Hallee Meltzer, Geno Pawlak, Karen M. Thorne, Karina Johnston, Richard F. Ambrose, Stephen C Schroeter, Henry M. Page, Hany Elwany

Integrating ecosystem resilience and resistance into decision support tools for multi-scale population management of a sagebrush indicator species Integrating ecosystem resilience and resistance into decision support tools for multi-scale population management of a sagebrush indicator species

Imperiled sagebrush (Artemisia spp.) ecosystems of western North America are experiencing unprecedented conservation planning efforts. Advances in decision-support tools operationalize concepts of ecosystem resilience by quantitatively linking spatially explicit variation in soil and plant processes to outcomes of biotic and abiotic disturbances. However, failure to consider higher...
Authors
Mark A. Ricca, Peter S. Coates

Habitat of the endangered salt marsh harvest mouse (Reithrodontomys raviventris) in San Francisco Bay Habitat of the endangered salt marsh harvest mouse (Reithrodontomys raviventris) in San Francisco Bay

Understanding habitat associations is vital for conservation of at‐risk marsh‐endemic wildlife species, particularly those under threat from sea level rise. We modeled environmental and habitat associations of the marsh‐endemic, Federally endangered salt marsh harvest mouse (Reithrodontomys raviventris, RERA) and co‐occurrence with eight associated small mammal species from annual trap...
Authors
Bruce G. Marcot, Isa Woo, Karen M. Thorne, Chase M. Freeman, Glenn R. Guntenspergen

Dermal denticle assemblages in coral reef sediments correlate with conventional shark surveys Dermal denticle assemblages in coral reef sediments correlate with conventional shark surveys

1. It is challenging to assess long-term trends in mobile, long-lived, and relatively rare species such as sharks. Despite ongoing declines in many coastal shark populations, conventional surveys might be too fleeting and too recent to describe population trends over decades to millennia. Placing recent shark declines into historical context should improve management efforts as well as...
Authors
Erin M. Dillon, Kevin D. Lafferty, Douglas J. McCauley, Darcy Bradley, Richard D. Norris, Jennifer E. Caselle, Graziella V. DiRenzo, Jonathan P.A. Gardner, Aaron O’Dea
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