Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42719
Resist-accept-direct (RAD) considerations for climate change adaptation in fisheries: The Wisconsin experience Resist-accept-direct (RAD) considerations for climate change adaptation in fisheries: The Wisconsin experience
Decision-makers in inland fisheries management must balance ecologically and socially palatable objectives for ecosystem services within financial or physical constraints. Climate change has transformed the potential range of ecosystem services available. The Resist-Accept-Direct (RAD) framework offers a foundation for responding to climate-induced ecosystem modification; however...
Authors
Zachary S. Feiner, Aaron D. Shultz, Greg G. Sass, Ashley Trudeau, Matthew G. Mitro, Colin J. Dassow, Alexander W. Latzka, Daniel A. Isermann, Bryan M. Maitland, Jared Joseph Homola, Holly Susan Embke, Michael Preul
Estimating species misclassification with occupancy dynamics and encounter rates: A semi-supervised, individual-level approach Estimating species misclassification with occupancy dynamics and encounter rates: A semi-supervised, individual-level approach
1. Large-scale, long-term biodiversity monitoring is essential to conservation, land management, and identifying threats to biodiversity. However, multispecies surveys are prone to various types of observation error, including false positive/negative detection, and misclassification, where a species is thought to have been encountered but not correctly identified. Previous methods assume...
Authors
Anna Spiers, Andy Royle, Christa Torrens, Maxwell Joseph
Reevaluation of the role of blocked Oropsylla hirsuta prairie dog fleas (Siphonaptera: Ceratophyllidae) in Yersinia pestis (Enterobacterales: Enterobacteriaceae) transmission Reevaluation of the role of blocked Oropsylla hirsuta prairie dog fleas (Siphonaptera: Ceratophyllidae) in Yersinia pestis (Enterobacterales: Enterobacteriaceae) transmission
Prairie dogs in the western United States experience periodic epizootics of plague, caused by the flea-borne bacterial pathogen Yersinia pestis. An early study indicated that Oropsylla hirsuta (Baker), often the most abundant prairie dog flea vector of plague, seldom transmits Y. pestis by the classic blocked flea mechanism. More recently, an alternative early-phase mode of transmission...
Authors
Adelaide Miarinjara, David A. Eads, David M. Bland, Marc R. Matchett, Dean E. Biggins, B. Joseph Hinnebusch
Microbially induced anaerobic oxidation of magnetite to maghemite in a hydrocarbon-contaminated aquifer Microbially induced anaerobic oxidation of magnetite to maghemite in a hydrocarbon-contaminated aquifer
Iron mineral transformations occurring in hydrocarbon-contaminated sites are linked to the biodegradation of the hydrocarbons. At a hydrocarbon-contaminated site near Bemidji, Minnesota, USA, measurements of magnetic susceptibility (MS) are useful for monitoring the natural attenuation of hydrocarbons related to iron cycling. However, a transient MS, previously observed at the site...
Authors
Leonard O. Ohenhen, Joshua M. Feinberg, Lee Slater, Dimitrios Ntarlagiannis, Isabelle M. Cozzarelli, Miriam Rios-Sanchez, Carl W. Isaacson, Alexis Stricker, Estella A. Atekwana
Environmental filtering controls soil biodiversity in wet tropical ecosystems Environmental filtering controls soil biodiversity in wet tropical ecosystems
The environmental factors controlling soil biodiversity along resource gradients remain poorly understood in wet tropical ecosystems. Aboveground biodiversity is expected to be driven by changes in nutrient availability in these ecosystems, however, much less is known about the importance of nutrient availability in driving soil biodiversity. Here, we combined a cross-continental soil...
Authors
Haiying Cui, Peter M. Vitousek, Sasha C. Reed, Wei Sun, Blessing Sokoya, Adebola R. Bamigboye, Jay Prakash Verma, Arpan Mukherjee, Gabriel F. Penaloza-Bojaca, Alberto L. Teixido, Pankaj Trivedi, Ji-Zheng He, Hang-Wei Hu, Kenny Png, Manuel Delgado-Baquerizo
Modeling the impact of invasive species litter on conditions affecting its spread and potential regime shift Modeling the impact of invasive species litter on conditions affecting its spread and potential regime shift
Many introduced plants pose invasion risks globally and threaten the biodiversity of native ecosystems. Such non-native plants can become invasive when they have advantages over native plants, such as having fewer natural enemies. Invasive plants often have the ability to alter ecosystem properties after they have become established, which can make it difficult to eliminate the invasive...
Authors
Yuanming Lu, Donald L. DeAngelis, Junfei Xia, Jiang Jiang
Space use and site fidelity of wintering whooping cranes on the Texas Gulf Coast Space use and site fidelity of wintering whooping cranes on the Texas Gulf Coast
The Aransas-Wood Buffalo population (the only non-reintroduced, migratory population) of endangered whooping cranes (Grus americana) overwinters along the Texas Gulf Coast, USA. Understanding whooping crane space use on the wintering grounds reveals essential aspects of this species' ecology, which subsequently assists with conservation. Using global positioning system telemetry data...
Authors
Matthew J Butler, David R. Stewart, Grant M Harris, Mark T. Bidwell, Aaron T. Pearse
Avian-associated Aspergillus fumigatus displays broad phylogenetic distribution, no evidence for host specificity, and multiple genotypes within epizootic events Avian-associated Aspergillus fumigatus displays broad phylogenetic distribution, no evidence for host specificity, and multiple genotypes within epizootic events
Birds are highly susceptible to aspergillosis, which can manifest as a primary infection in both domestic and wild birds. Aspergillosis in wild birds causes mortalities ranging in scale from single animals to large-scale epizootic events. However, pathogenicity factors associated with aspergillosis in wild birds have not been examined. Specifically, it is unknown whether wild bird...
Authors
Lotus A. Lofgren, Jeffrey M. Lorch, Robert A. Cramer, David S. Blehert, Brenda M. Berlowski-Zier, Megan Winzeler, Cecilia Gutierrez-Perez, Nicole E. Kordana, Jason E. Stajich
A Resist-Accept-Direct decision-support tool for walleye Sander vitreus (Mitchill) management in Wisconsin A Resist-Accept-Direct decision-support tool for walleye Sander vitreus (Mitchill) management in Wisconsin
Large-scale modelling and prediction provide insight into general influences of climate change on inland recreational fisheries; however, small-scale dynamics and local expertise will be key in developing explicit goals for managing recreational fisheries as the climate changes. The resist-accept-direct (RAD) framework encompasses the entire decision space managers consider when...
Authors
Colin J. Dassow, Alex W. Latzka, Abigail Lynch, Greg G. Sass, Ralph W. Tingley, Craig P. Paukert
Population reproductive structure of Rainbow Trout determined by histology and advancing methods to assign sex and assess spawning capability Population reproductive structure of Rainbow Trout determined by histology and advancing methods to assign sex and assess spawning capability
Rainbow Trout Oncorhynchus mykiss have been intensively studied and gametogenesis has been described, but the use of reproductive indices in field studies has not been widely applied when assessing variability in growth or recruitment dynamics. We integrated descriptions for gametogenesis within the framework of standardized terminology for reproductive development in teleosts to develop...
Authors
James A. Crossman, Molly A. H. Webb, Josh Korman, Michael D. Yard
Precision and bias of spatial capture–recapture estimates: A multi-site, multi-year Utah black bear case study Precision and bias of spatial capture–recapture estimates: A multi-site, multi-year Utah black bear case study
Spatial capture–recapture (SCR) models are powerful analytical tools that have become the standard for estimating abundance and density of wild animal populations. When sampling populations to implement SCR, the number of unique individuals detected, total recaptures, and unique spatial relocations can be highly variable. These sample sizes influence the precision and accuracy of model...
Authors
Greta M Schmidt, Tabitha A. Graves, Jordan C Pederson, Sarah L Carroll
Evaluating temporal and spatial transferability of a tidal inundation model for foraging waterbirds Evaluating temporal and spatial transferability of a tidal inundation model for foraging waterbirds
For ecosystem models to be applicable outside their context of development, temporal and spatial transferability must be demonstrated. This presents a challenge for modeling intertidal ecosystems where spatiotemporal variation arises at multiple scales. Models specializing in tidal dynamics are generally inhibited from having wider ecological applications by coarse spatiotemporal...
Authors
Marisa T. Martinez, Leonardo Calle, Stephanie Romanach, Dale E. Gawlik