Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42884
A guide to processing bat acoustic data for the North American Bat Monitoring Program (NABat) A guide to processing bat acoustic data for the North American Bat Monitoring Program (NABat)
The North American Bat Monitoring Program (NABat) aims to improve the state of conservation science for all species of bats shared by the United States, Canada, and Mexico. To accomplish this goal, NABat offers guidance and standardized protocols for acoustic monitoring of bats. In this document, “A Guide to Processing Bat Acoustic Data for the North American Bat Monitoring Program...
Authors
Brian E. Reichert, Cori Lausen, Susan Loeb, Ted Weller, Ryan Allen, Eric Britzke, Tara Hohoff, Jeremy Siemers, Braden Burkholder, Carl Herzog, Michelle Verant
The complete mitochondrial genome of the stalk-forming diatom Didymosphenia geminata The complete mitochondrial genome of the stalk-forming diatom Didymosphenia geminata
The complete mitogenome of the stalk-forming diatom Didymosphenia geminata collected from Mineral County, WV, USA was sequenced on the Ion Torrent PGM and Proton sequencers. The D. geminata mitogenome is 37,765 bp and encodes 35 protein coding genes, 25 tRNAs, and both large and small subunit ribosomal RNA genes. The nad11 gene is split into two domains as observed in Phaeodactylum...
Authors
Aaron W. Aunins, Donald Hamilton, Tim L. King
Divergent effects of land-use, propagule pressure, and climate on woody riparian invasion Divergent effects of land-use, propagule pressure, and climate on woody riparian invasion
Landscape-scale analyses of biological invasion are needed to understand the relative importance of environmental drivers that vary at larger scales, such as climate, propagule pressure, resource availability, and human disturbance. One poorly understood landscape-scale question is, how does human land-use influence riparian plant invasion? To evaluate the relative importance of land-use...
Authors
Laura G Perry, Lindsay V. Reynolds, Patrick B. Shafroth
Protection from UV light is an evolutionarily conserved feature of the haematopoietic niche Protection from UV light is an evolutionarily conserved feature of the haematopoietic niche
Haematopoietic stem and progenitor cells (HSPCs) require a specific microenvironment, the haematopoietic niche, which regulates HSPC behaviour. The location of this niche varies across species, but the evolutionary pressures that drive HSPCs to different microenvironments remain unknown. The niche is located in the bone marrow in adult mammals, whereas it is found in other locations in...
Authors
Friedrich G. Kapp, Julie R. Perlin, Elliott J. Hagedorn, John M. Gansner, Daniel E. Schwarz, Lauren A. O’Connell, Nicholas S. Johnson, Chris Amemiya, David E. Fisher, Ute Wolfle, Eirini Trompouki, Charlotte M. Niemeyer, Wolfgang Driever, Leonard I. Zon
Cyanobacteria reduce quagga mussel (Dreissena rostriformis bugensis) spawning and fertilization success Cyanobacteria reduce quagga mussel (Dreissena rostriformis bugensis) spawning and fertilization success
Quagga mussels (Dreissena rostriformis bugensis) are highly fecund broadcast spawners invasive to freshwaters of North America and western Europe. We hypothesized that environmental cues from phytoplankton can trigger gamete release in quagga mussels. Nutritious algae may stimulate dreissenid spawning, but less palatable food, such as bloom-forming cyanobacteria, could be a hindrance...
Authors
Anna G. Boegehold, Nicholas S. Johnson, Jeffrey L. Ran, Donna R. Kashian
Characterization of Sea Lamprey stream entry using dual‐frequency identification sonar Characterization of Sea Lamprey stream entry using dual‐frequency identification sonar
Effective methods to control invasive Sea Lampreys Petromyzon marinus in the Laurentian Great Lakes often rely on knowledge of the timing of the Sea Lamprey spawning migration, which has previously been characterized using data gathered from traps. Most assessment traps are located many kilometers upstream from the river mouth, so less is known about when Sea Lampreys enter spawning...
Authors
Erin L. McCain, Nicholas S. Johnson, Peter J. Hrodey, Kevin L. Pangle
A distributed pipeline for DIDSON data processing A distributed pipeline for DIDSON data processing
Technological advances in the field of ecology allow data on ecological systems to be collected at high resolution, both temporally and spatially. Devices such as Dual-frequency Identification Sonar (DIDSON) can be deployed in aquatic environments for extended periods and easily generate several terabytes of underwater surveillance data which may need to be processed multiple times. Due...
Authors
Liling Li, Tyler Danner, Jesse Eickholt, Erin L. McCann, Kevin Pangle, Nicholas S. Johnson
Multistate models of bigheaded carps in the Illinois River reveal spatial dynamics of invasive species Multistate models of bigheaded carps in the Illinois River reveal spatial dynamics of invasive species
Knowledge of the spatial distributions and dispersal characteristics of invasive species is necessary for managing the spread of highly mobile species, such as invasive bigheaded carps (Bighead Carp [Hypophthalmichthys nobilis] and Silver Carp [H. molitrix]). Management of invasive bigheaded carps in the Illinois River has focused on using human-made barriers and harvest to limit...
Authors
Alison A. Coulter, Marybeth K. Brey, Matthew Lubejko, Jahn L. Kallis, David P. Coulter, David C. Glover, James E. Garvey, Gregory W. Whitledge
Large-scale variation in density of an aquatic ecosystem indicator species Large-scale variation in density of an aquatic ecosystem indicator species
Monitoring indicator species is a pragmatic approach to natural resource assessments, especially when the link between the indicator species and ecosystem state is well justified. However, conducting ecosystem assessments over representative spatial scales that are insensitive to local heterogeneity is challenging. We examine the link between polychlorinated biphenyl (PCB) contamination...
Authors
Chris Sutherland, Angela K. Fuller, J. Andrew Royle, Matthew P. Hare, Sean Madden
Spatial patterns of development drive water use Spatial patterns of development drive water use
Water availability is becoming more uncertain as human populations grow, cities expand into rural regions and the climate changes. In this study, we examine the functional relationship between water use and the spatial patterns of developed land across the rapidly growing region of the southeastern United States. We quantified the spatial pattern of developed land within census tract...
Authors
G.M. Sanchez, J.W. Smith, Adam J. Terando, G. Sun, R.K. Meentemeyer
Looking beyond wildlife: Using remote cameras to evaluate accuracy of gridded snow data Looking beyond wildlife: Using remote cameras to evaluate accuracy of gridded snow data
The use of remote cameras is widespread in wildlife ecology, yet few examples exist of their utility for collecting environmental data. We used a novel camera trap method to evaluate the accuracy of gridded snow data in a mountainous region of the northeastern US. We were specifically interested in assessing (1) how snow depth observations from remote cameras compare with gridded climate...
Authors
Alexej P.K. Siren, Marcelo Somos-Valenzuela, Catherine Callahan, Jillian R. Kilborn, Timothy Duclos, Cassie Tragert, Toni Lyn Morelli
Evolving environmental and geometric controls on Columbia Glacier’s continued retreat Evolving environmental and geometric controls on Columbia Glacier’s continued retreat
Geometry strongly controls the dynamic behavior of marine‐terminating (tidewater) glaciers, significantly influencing advance and retreat cycles independent of climate. Yet the recent, nearly ubiquitous retreat of tidewater glaciers suggests that changes in atmospheric and oceanic forcing may also drive dynamic change. To isolate the influence of geometry on tidewater glacier dynamics...
Authors
Ellyn Enderlin, Shad O’Neel, Timothy C. Bartholomaus, Ian Joughin