Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42701
Leveraging an observed-data likelihood improves the use of machine learning labels in a Bayesian hierarchical model for bioacoustic data Leveraging an observed-data likelihood improves the use of machine learning labels in a Bayesian hierarchical model for bioacoustic data
Classification of massive datasets by machine learning (ML) algorithms is promising for many scientific domains, especially wildlife monitoring programs that rely on passive acoustic surveys for detecting species. However, treating ML-predicted class labels (e.g., species identity) as truth biases inferences of focal parameters within common modeling frameworks. One solution is to model...
Authors
Jacob Oram, Katharine M. Banner, Christian Stratton, Andrew Hoegh, Kathryn Irvine
Range-wide population trend analysis for greater sage-grouse (Centrocercus urophasianus)—Updated 1960–2024 Range-wide population trend analysis for greater sage-grouse (Centrocercus urophasianus)—Updated 1960–2024
Greater sage-grouse (Centrocercus urophasianus; hereafter sage-grouse) are at the center of State and national land-use policies largely because of their unique life-history traits as an ecological indicator for the health of sagebrush ecosystems. This updated population trend analysis provides State and Federal land and wildlife managers with the best available science to help guide...
Authors
Brian G. Prochazka, Peter S. Coates, Cameron L. Aldridge, Michael S. O’Donnell, David R. Edmunds, Adrian P. Monroe, Steve E. Hanser, Lief A. Wiechman, Michael P. Chenaille
Sentinel-2 based estimates of rangeland fractional cover and canopy gap class for the western United States Sentinel-2 based estimates of rangeland fractional cover and canopy gap class for the western United States
Rangelands are extensive ecosystems, providing important ecosystem services while undergoing continuous change. As a result, improved monitoring technologies can help better characterize vegetation change. Satellite remote sensing has proven effective in this regard, tracking vegetation dynamics at broad and fine scales. We leveraged the spatial, spectral, and temporal resolution of...
Authors
Brady W. Allred, Sarah E. McCord, Timothy J. Assal, Brandon T. Bestelmeyer, Chad S. Boyd, Alexander C. Brooks, Samantha M. Cady, Michael C. Duniway, Samuel D. Fuhlendorf, Shane A. Green, Georgia R. Harrison, Eric R. Jensen, Emily J. Kachergis, Anna C. Knight, Chloe M. Mattilio, Brian A. Mealor, David E. Naugle, Dylan O’Leary, Peter J. Olsoy, Erika S. Peirce, Jason R. Reinhardt, Robert K. Shriver, Joseph T. Smith, Jason D. Tack, Ashley M. Tanner, Evan P. Tanner, Dirac Twidwell, Nicholas P. Webb, Scott L. Morford
Rare milkvetch (Astragalus) persistence at a utility-scale solar energy facility in the Mojave Desert Rare milkvetch (Astragalus) persistence at a utility-scale solar energy facility in the Mojave Desert
Utility-scale solar energy (USSE) development is driving the projected growth in global renewable energy capacity but comes with environmental tradeoffs. New, alternative construction methods are promoted to minimize impacts to soils, vegetation, and hydrology; however, the disturbance created by these methods requires further investigation. We evaluated the population of a rare annual...
Authors
Tiffany J. Pereira, Claire C Karban, Lara A. Kobelt, Seth Munson
The effects of carnivory and herbivory on the energy balance of Arctic grizzly bears The effects of carnivory and herbivory on the energy balance of Arctic grizzly bears
Omnivores often face tradeoffs between selecting for spatially dispersed energy-dense vertebrate prey versus densely distributed herbivorous resources that have limited energetic value per unit intake. Arctic grizzly bears (Ursus arctos) are large omnivores within a resource-limited ecosystem that are known to exhibit smaller body masses and occur at lower densities than grizzly bears in...
Authors
Anthony M. Pagano, Karyn D. Rode, Kerry L. Nicholson, William B. Leacock, Craig A. Stricker, Charles T. Robbins
Potential thiamine deficiency of phytoplankton across a productivity gradient and seasons in Ohio lakes Potential thiamine deficiency of phytoplankton across a productivity gradient and seasons in Ohio lakes
Although nitrogen and phosphorus deficiency of algal blooms have been the focus of substantial attention, organic nutrients can limit algal growth in aquatic systems. Growing evidence indicates thiamine (vitamin B1) can influence the community of primary producers in marine systems, but comparatively little is known about the effect of thiamine on freshwater algal productivity.We...
Authors
Freya Elizabeth Rowland, Michael J. Vanni, Nicole M. Hayes, Clifford E. Kraft
Evaluating the central–marginal hypothesis: Introgression and genetic variation at the trailing edge of Quercus bicolor Evaluating the central–marginal hypothesis: Introgression and genetic variation at the trailing edge of Quercus bicolor
The central–marginal hypothesis (CMH) predicts reduced genetic diversity and increased differentiation in range-edge populations due to ecological marginality and limited gene flow. Deviations from this pattern, however, can result from historical demographic processes, variation in reproductive strategies or interspecific hybridization. The genus Quercus, known for hybridization and...
Authors
Jesse B. Parker, Sean Hoban, Laura Thompson, Scott E. Schlarbaum
A monitoring framework to assess forest bird population response to landscape scale mosquito suppression using the Incompatible Insect Technique A monitoring framework to assess forest bird population response to landscape scale mosquito suppression using the Incompatible Insect Technique
The Birds, Not Mosquitoes Monitoring and Support Science Working Group detailed methods for monitoring the population response of Hawaiian forest birds during implementation of the Incompatible Insect Technique (IIT) on the islands of Maui and Kauaʻi. The group prioritized methods for measuring the influence of mosquito suppression on populations within IIT treatment and control areas...
Authors
Seth Judge, Christopher C Warren, Amanda K Navine, Richard J. Camp, Lisa H. Crampton, Hanna L Mounce, John Vetter, Lauren K. Smith, Patrick J. Hart, Mona Renee Bellinger, Katherine Maria McClure
Hosts, pathogens and hot ponds: Thermal mean and variability contribute to spatial patterns of chytrid infection Hosts, pathogens and hot ponds: Thermal mean and variability contribute to spatial patterns of chytrid infection
Temperature is a primary driver of heterogeneity in host–pathogen dynamics and understanding how patch-scale temperature affects landscape-scale patterns of pathogen infection is key to effective monitoring and management. In field studies, both temperature variability and mean temperature are often related to infection of ectothermic animals by fungal pathogens, and although these...
Authors
Brendan K Hobart, Daniel A. Grear, Megan Winzeler, Travis Mcdevitt-Galles, Timothy M Korpita, Erin L. Muths, Valerie J McKenzie
How high? Identifying elevation thresholds to guide coastal marsh restoration How high? Identifying elevation thresholds to guide coastal marsh restoration
Introduction Coastal marshes are highly valuable ecosystems facing threats from rising sea levels and intensifying storm events. To elevate marsh surfaces and prevent loss of ecosystem services, the beneficial use of dredged material (BUDM) is increasingly being implemented across the United States. Objectives The objective of this study was to aid decision-makers and restoration...
Authors
Emily N. Fromenthal, Camille L. Stagg, Jena A. Moon, Taylor Abshier, Omar Alawneh, Jack A. Cadigan, Daniel A. Gallegos, Brian D. Harris, Nia R. Hurst, Navid H. Jafari, Todd Merendino, Matthew R. Nelson, Michael J. Osland, Philip Pauling, Michael Rezsutek, Colt R. Sanspree, Rachel Katherine Villani
Groundwater structures fish growth and production across a riverscape Groundwater structures fish growth and production across a riverscape
Landscapes are composed of habitat patches and conditions that vary across space and time. While habitat variability and complexity can support important ecological processes and ecosystem services, the dynamic nature of habitats can also constrain organismal growth and production as optimal conditions are fleeting. In riverine ecosystems, groundwater discharge to streams stabilises...
Authors
Jeffrey R. Baldock, Robert Al-Chokhachy, Annika W. Walters
When do single-species occupancy models outperform multispecies models? When do single-species occupancy models outperform multispecies models?
Occupancy models have become increasingly popular for species monitoring and assessment, in part, because detection/non-detection data are readily obtained using a variety of methods. Multispecies occupancy models (MSOMs) can yield more accurate parameter estimates than single-species models (SSOMs) with less data through their hierarchical structure, making MSOMs an attractive option...
Authors
Gavin G. Cotterill, Douglas A. Keinath, Tabitha A. Graves