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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 43069

Distribution, abundance, and breeding activities of Southwestern Willow Flycatchers (Empidonax traillii extimus) on the San Dieguito River and upper San Luis Rey River, San Diego County, California—2025 data summary Distribution, abundance, and breeding activities of Southwestern Willow Flycatchers (Empidonax traillii extimus) on the San Dieguito River and upper San Luis Rey River, San Diego County, California—2025 data summary

Executive Summary We surveyed for Southwestern Willow Flycatchers (Empidonax traillii extimus; flycatcher) at the San Dieguito River and the upper San Luis Rey River in 2025. Surveys were completed at five locations: one along the San Dieguito River (San Dieguito [SD]), which was last surveyed in 2016, and four along the upper San Luis Rey River, including three downstream from Lake...
Authors
Scarlett L. Howell, Barbara E. Kus

Open water control of invasive mussels using benthic mats—Part 1, short-term infusion of carbon dioxide under a mat Open water control of invasive mussels using benthic mats—Part 1, short-term infusion of carbon dioxide under a mat

This study compared the efficacy of a benthic mat alone with carbon dioxide infusion under a mat for killing Dreissena polymorpha (Pallas, 1771) (zebra mussel). Three sites were selected in Loon Lake, Sleeping Bear Dunes National Lakeshore, Benzie County, Michigan, for replication of reference, benthic mat, and carbon dioxide mat treatments. Within a site, three 4-meter (m) x 4-m plots...
Authors
Diane L. Waller, Richard A. Erickson, Jeremy K. Wise, Matthew J. Meulemans, Brad E.C. Morris, Todd J. Severson, Matthew T. Barbour

Cnidarian–algal partnerships structure bacterial communities during strobilation in Cassiopea xamachana Cnidarian–algal partnerships structure bacterial communities during strobilation in Cassiopea xamachana

Cnidarian–algal (Symbiodiniaceae) symbioses rely on complex interactions among the cnidarian host, algal symbionts, and associated bacterial communities. In the upside-down jellyfish Cassiopea xamachana, the polyp-to-medusa transition (strobilation) requires the establishment of symbiosis with Symbiodiniaceae algal partners, yet bacterial community dynamics during this developmental...
Authors
Federica Montesanto, Mark McCauley, Samuel A. Bedgood, Cody Miner, Bailey Steinworth, Victoria Sharp, Aki H. Ohdera, Ayobami Oluokun, Mojibola Fowowe, Odunayo Oluokun, Yehia Mechref, Tingting Xiang, Monica Medina, Virginia M. Weis, Mark Q. Martindale, Sandra Loesgen

Disease, drought, and warming: A triple threat to a declining high-elevation amphibian Disease, drought, and warming: A triple threat to a declining high-elevation amphibian

Managing species in an uncertain future is a reality for natural resource decision makers. Climate change is expected to exacerbate threats such as habitat loss and disease, and cause phenological mismatches, but there is uncertainty in the magnitude of these effects. Amphibians are among the most threatened taxa on earth, and most species in North America are uniquely tied to water...
Authors
Amanda Marie Kissel, L. Mae Lacey, Viorel D. Popescu, Marissa A. Dyck, Larissa L. Bailey, Erin L. Muths

Debunking the myth of the quintessential resource manager: Precision in actionable science Debunking the myth of the quintessential resource manager: Precision in actionable science

“Actionable science” is a widely held standard for identifying the merits of natural resources research. Yet, science is often framed as actionable to a vaguely identified quintessential “manager” without defining either the intended manager or use. Generic descriptions lack precision for identifying end users or their needs, limiting methodological rigor in research design and leading...
Authors
Amanda E. Cravens, Nicole M. Herman-Mercer, Aparna Bamzai-Dodson, Megan A. Moore, Richard Eugene Waggaman Berl, Nicholas W. Cole, Oronde Oliver Drakes, Diamond Victoria Ebanks, David C. Fulton, Megan Siobhan Jones, Dawn Marie Kotowicz, Michael C Mcinturff, James R. Meldrum, Kathryn Powlen, Aaron Daniel Russell, Stefan Gabriel Tangen, Emily J. Wilkins

Black abalone surveys at Naval Base Ventura County, San Nicolas Island, California—2023 annual report Black abalone surveys at Naval Base Ventura County, San Nicolas Island, California—2023 annual report

The U.S. Geological Survey monitors a suite of intertidal black abalone (Haliotis cracherodii) sites at San Nicolas Island, California, in cooperation with the U.S. Navy, which owns the island. The nine rocky intertidal sites were established in 1980 to study the potential effect of translocated sea otters on the intertidal black abalone population at the island. The sites were monitored...
Authors
Michael C. Kenner, Julie L. Yee

Summaries of goals, actions, and information needs by management entity Summaries of goals, actions, and information needs by management entity

The grasslands in the North Central region are managed by a diverse group of Federal, State, and Tribal agencies; nongovernmental organizations; partnerships; and private landowners. This chapter highlights these various grassland management entities, provides background information on their mission and organizational structure, and describes some of their key grassland management...

Mangrove microbiomes as drivers of ecosystem recovery and restoration success Mangrove microbiomes as drivers of ecosystem recovery and restoration success

The microbes found in the rhizosphere, roots, leaves and stem surfaces and within the internal tissues of mangrove vegetation and their environment constitute the microbiome of the ecosystem. The organisms in the microbiome include bacteria, protozoa, fungi, algae, amoebas, and slime molds, which assist in maintaining and restoring mangrove ecosystems. This review explores the role of...
Authors
Elijah I. Ohimain, Robert Eugene Turner, Beth Middleton

Effects of repeat prescribed burning in dry coniferous forests in national parks of California Effects of repeat prescribed burning in dry coniferous forests in national parks of California

Background Prescribed fire is a common approach to reduce fuels and mitigate fire hazards. The accumulation of live and dead fuels following initial treatment means that repeated application of prescribed fire could be used to maintain this benefit. However, the effect of repeated prescribed fires is not well documented in many dry coniferous forests in the western United States. Here...
Authors
Phillip J. van Mantgem, Micah C. Wright, Calvin A. Farris, Eamon Engber, Emma J. McClure, Anthony C. Caprio, MaryBeth Keifer

Assessing environmental influences on gene flow for a migratory ungulate in a fire-prone landscape Assessing environmental influences on gene flow for a migratory ungulate in a fire-prone landscape

Context Migratory species traverse long distances across complex landscape mosaics. Shifts in environmental attributes across space and time could affect movement paths and genetic connectivity of migratory species.Objectives We identified boundaries to genetic connectivity based on population structure and evaluated environmental influences on gene flow in a migratory ungulate. We...
Authors
Elizabeth P Flesch, Tabitha A. Graves, Mark Biel

Status and trends of pelagic and benthic prey fish populations in Lake Michigan, 2025 Status and trends of pelagic and benthic prey fish populations in Lake Michigan, 2025

Fall bottom trawl (fall BT) and lakewide acoustic (AC) surveys are conducted annually to generate indices of pelagic and benthic prey fish densities in Lake Michigan. The fall BT survey has been conducted each fall since 1973 using 12-m trawls at depths ranging from 9 to 110 m at fixed locations distributed across seven transects; this survey estimates densities of seven prey fish...
Authors
Ralph W. Tingley, Timothy P. O’Brien, Charles P. Madenjian, Peter C. Esselman, Patricia Dieter, Kristy Phillips, Ben Turschak, Dale Hanson, Steven A. Farha
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