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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42702

Characterization of Monkeypox virus infection in African rope squirrels (Funisciurus sp.) Characterization of Monkeypox virus infection in African rope squirrels (Funisciurus sp.)

Monkeypox (MPX) is a zoonotic disease endemic in Central and West Africa and is caused by Monkeypox virus (MPXV), the most virulent Orthopoxvirus affecting humans since the eradication of Variola virus (VARV). Many aspects of the MPXV transmission cycle, including the natural host of the virus, remain unknown. African rope squirrels (Funisciurus spp.) are considered potential reservoirs...
Authors
Elizabeth Falendysz, Juan G. Lopera, Jeffrey B. Doty, Yoshinori J. Nakazawa, Colleen Crill, Faye Lorenzsonn, Lem’s N. Kalemba, Monica Ronderos, Andres Meija, Jean M. Malekani, Kevin L. Karem, Darrin Caroll, Jorge E. Osorio, Tonie E. Rocke

A comment on “temporal variation in survival and recovery rates of lesser scaup” A comment on “temporal variation in survival and recovery rates of lesser scaup”

Concerns about declines in the abundance of lesser scaup (Aythya affinis) have promoted a number of analyses to understand reasons for this decline. Unfortunately, most of these analyses, including that of Arnold et al. (2016 Journal of Wildlife Management 80: 850–861), are based on observational studies leading to weak inference. Although we commend the efforts of Arnold et al. (2016...
Authors
Mark S. Lindberg, G. Scott Boomer, Joel A. Schmutz, Johann A. Walker

Structural overshoot of tree growth with climate variability and the global spectrum of drought-induced forest dieback Structural overshoot of tree growth with climate variability and the global spectrum of drought-induced forest dieback

Ongoing climate change poses significant threats to plant function and distribution. Increased temperatures and altered precipitation regimes amplify drought frequency and intensity, elevating plant stress and mortality. Large-scale forest mortality events will have far-reaching impacts on carbon and hydrological cycling, biodiversity, and ecosystem services. However, biogeographical...
Authors
Alistair S. Jump, Paloma Ruiz-Benito, Sarah Greenwood, Craig D. Allen, Thomas Kitzberger, Rod Fensham, Jordi Martinez-Vilalta, Francisco Lloret

Incorporating evolutionary insights to improve ecotoxicology for freshwater species Incorporating evolutionary insights to improve ecotoxicology for freshwater species

Ecotoxicological studies have provided extensive insights into the lethal and sublethal effects of environmental contaminants. These insights are critical for environmental regulatory frameworks, which rely on knowledge of toxicity for developing policies to manage contaminants. While varied approaches have been applied to ecotoxicological questions, perspectives related to the...
Authors
Steven P. Brady, Jonathan L. Richardson, Bethany K. Kunz

Evidence of coupled carbon and iron cycling at a hydrocarbon-contaminated site from time lapse magnetic susceptibility Evidence of coupled carbon and iron cycling at a hydrocarbon-contaminated site from time lapse magnetic susceptibility

Conventional characterization and monitoring of hydrocarbon (HC) pollution is often expensive and time-consuming. Magnetic susceptibility (MS) has been proposed as an inexpensive, long-term monitoring proxy of the degradation of HC. We acquired repeated down hole MS logging data in boreholes at a HC-contaminated field research site in Bemidji, MN, USA. The MS data were analyzed in...
Authors
Anders L. Lund, Lee D. Slater, Estella A. Atekwana, Dimitrios Ntarlagiannis, Isabelle M. Cozzarelli, Barbara A. Bekins

Comparing automated classification and digitization approaches to detect change in eelgrass bed extent during restoration of a large river delta Comparing automated classification and digitization approaches to detect change in eelgrass bed extent during restoration of a large river delta

Native eelgrass (Zostera marina) is an important contributor to ecosystem services that supplies cover for juvenile fish, supports a variety of invertebrate prey resources for fish and waterbirds, provides substrate for herring roe consumed by numerous fish and birds, helps stabilize sediment, and sequesters organic carbon. Seagrasses are in decline globally, and monitoring changes in...
Authors
Anna Elizabeth Davenport, Jerry D. Davis, Isa Woo, Eric E. Grossman, Jesse B. Barham, Christopher S. Ellings, John Y. Takekawa

Lessons from the Tōhoku tsunami: A model for island avifauna conservation prioritization Lessons from the Tōhoku tsunami: A model for island avifauna conservation prioritization

Earthquake-generated tsunamis threaten coastal areas and low-lying islands with sudden flooding. Although human hazards and infrastructure damage have been well documented for tsunamis in recent decades, the effects on wildlife communities rarely have been quantified. We describe a tsunami that hit the world's largest remaining tropical seabird rookery and estimate the effects of sudden...
Authors
Michelle H. Reynolds, Paul Berkowitz, John Klavitter, Karen Courtot

Northern tamarisk beetle (Diorhabda carinulata) and tamarisk (Tamarix spp.) interactions in the Colorado River basin Northern tamarisk beetle (Diorhabda carinulata) and tamarisk (Tamarix spp.) interactions in the Colorado River basin

Northern tamarisk beetles (Diorhabda carinulata) were released in the Upper Colorado River Basin in the United States in 2004–2007 to defoliate introduced tamarisk shrubs (Tamarix spp.) in the region’s riparian zones. The primary purpose was to control the invasive shrub and reduce evapotranspiration (ET) by tamarisk in an attempt to increase stream flows. We evaluated beetle–tamarisk...
Authors
Pamela L. Nagler, Uyen Nguyen, Heather L. Bateman, Christopher Jarchow, Edward P. Glenn, William J. Waugh, Charles van Riper

Long-term dynamics and characteristics of snags created for wildlife habitat Long-term dynamics and characteristics of snags created for wildlife habitat

Snags provide essential habitat for numerous organisms and are therefore critical to the long-term maintenance of forest biodiversity. Resource managers often use snag creation to mitigate the purposeful removal of snags at the time of harvest, but information regarding how created snags change over long timescales (>20 y) is absent from the literature. In this study, we evaluated the...
Authors
Amy M. Barry, Joan Hagar, James W. Rivers

Logistic quantile regression provides improved estimates for bounded avian counts: A case study of California Spotted Owl fledgling production Logistic quantile regression provides improved estimates for bounded avian counts: A case study of California Spotted Owl fledgling production

Counts of avian fledglings, nestlings, or clutch size that are bounded below by zero and above by some small integer form a discrete random variable distribution that is not approximated well by conventional parametric count distributions such as the Poisson or negative binomial. We developed a logistic quantile regression model to provide estimates of the empirical conditional...
Authors
Brian S. Cade, Barry R. Noon, Rick D. Scherer, John J. Keane

Biological and ecological science for Florida—The Sunshine State Biological and ecological science for Florida—The Sunshine State

Florida is rich in sunshine and other natural resources essential to the State's economy. More than 100 million tourists visit Florida's beaches, wetlands, forests, oceans, lakes, and streams where they generate billions of dollars and sustain more than a million jobs. Florida also provides habitat for several thousand freshwater and marine fish, mammals, birds, and other wildlife that...
Authors
Water Resources Division U.S. Geological Survey

Simultaneous estimation of diet composition and calibration coefficients with fatty acid signature data Simultaneous estimation of diet composition and calibration coefficients with fatty acid signature data

Knowledge of animal diets provides essential insights into their life history and ecology, although diet estimation is challenging and remains an active area of research. Quantitative fatty acid signature analysis (QFASA) has become a popular method of estimating diet composition, especially for marine species. A primary assumption of QFASA is that constants called calibration...
Authors
Jeffrey F. Bromaghin, Suzanne M. Budge, Gregory W. Thiemann, Karyn D. Rode
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