Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42994
Guest editorial: Aquatic science in the Northwest Guest editorial: Aquatic science in the Northwest
In recent years, Northwest Science has seen a significant increase in the number of submissions representing aquatic science. Our region is punctuated by aquatic systems. The current issue in particular, presents a number of new aquatic science contributions. Accordingly, Northwest Science invited the authors of this guest editorial to address the question, why is aquatic science so...
Authors
Adam J. Sepulveda, Andrew M. Ray
Quantile regression applications in ecology and the environmental sciences Quantile regression applications in ecology and the environmental sciences
No abstract available.
Authors
Brian S. Cade
A probe-based quantitative PCR assay for detecting Tetracapsuloides bryosalmonae in fish tissue and environmental DNA water samples A probe-based quantitative PCR assay for detecting Tetracapsuloides bryosalmonae in fish tissue and environmental DNA water samples
A probe-based quantitative real-time PCR assay was developed to detect Tetracapsuloides bryosalmonae, which causes proliferative kidney disease in salmonid fish, in kidney tissue and environmental DNA (eDNA) water samples. The limits of detection and quantification were 7 and 100 DNA copies for calibration standards and T. bryosalmonae was reliably detected down to 100 copies in tissue...
Authors
Patrick R. Hutchins, Adam J. Sepulveda, Renee Martin, Lacey Hopper
Pneumonia in bighorn sheep: Risk and resilience Pneumonia in bighorn sheep: Risk and resilience
Infectious disease was an important driver of historic declines and extirpations of bighorn sheep (Ovis canadensis) in North America and continues to impede population restoration and management. Domestic sheep have long been linked to pneumonia outbreaks in bighorn sheep and this association has now been confirmed in 13 captive commingling experiments. However, ecological and...
Authors
E. Frances Cassirer, Kezia R. Manlove, Emily S. Almberg, Pauline Kamath, Mike Cox, Peregrine L. Wolff, Annette Roug, Justin M. Shannon, Rusty Robinson, Richard B. Harris, Ben J. Gonzales, Raina K. Plowright, Peter J. Hudson, Paul C. Cross, Andrew Dobson, Thomas E. Besser
Spatially explicit population estimates for black bears based on cluster sampling Spatially explicit population estimates for black bears based on cluster sampling
We estimated abundance and density of the 5 major black bear (Ursus americanus) subpopulations (i.e., Eglin, Apalachicola, Osceola, Ocala-St. Johns, Big Cypress) in Florida, USA with spatially explicit capture-mark-recapture (SCR) by extracting DNA from hair samples collected at barbed-wire hair sampling sites. We employed a clustered sampling configuration with sampling sites arranged...
Authors
J. Humm, J. Walter McCown, B.K. Scheick, Joseph D. Clark
Climate change and alpine stream biology: progress, challenges, and opportunities for the future Climate change and alpine stream biology: progress, challenges, and opportunities for the future
In alpine regions worldwide, climate change is dramatically altering ecosystems and affecting biodiversity in many ways. For streams, receding alpine glaciers and snowfields, paired with altered precipitation regimes, are driving shifts in hydrology, species distributions, basal resources, and threatening the very existence of some habitats and biota. Alpine streams harbour substantial...
Authors
Scott Hotaling, Debra S. Finn, J. Joseph Giersch, David W. Weisrock, Dean Jacobsen
The nexus of fun and nutrition: Recreational fishing is also about food The nexus of fun and nutrition: Recreational fishing is also about food
Recreational fishing is a popular activity in aquatic ecosystems around the globe using a variety of gears including rod and line and to a lesser extent handlines, spears, bow and arrow, traps and nets. Similar to the propensity to engage in voluntary catch-and-release, the propensity to harvest fishes strongly varies among cultures, locations, species and fisheries. There is a...
Authors
Steven J. Cooke, William M. Twardek, Robert J. Lennox, Aaron J. Zolderdo, Shannon D. Bower, Lee F. G. Gutowsky, Andy J. Danylchuk, Robert Arlinghaus, Beard
Potential paths for male-mediated gene flow to and from an isolated grizzly bear population Potential paths for male-mediated gene flow to and from an isolated grizzly bear population
For several decades, grizzly bear populations in the Greater Yellowstone Ecosystem (GYE) and the Northern Continental Divide Ecosystem (NCDE) have increased in numbers and range extent. The GYE population remains isolated and although effective population size has increased since the early 1980s, genetic connectivity between these populations remains a long-term management goal. With...
Authors
Christopher P. Peck, Frank T. van Manen, Cecily M. Costello, Mark A. Haroldson, Lisa Landenburger, Lori L. Roberts, Daniel D. Bjornlie, Richard D. Mace
Monitoring eradication of European mouflon sheep from the Kahuku Unit of Hawai‘i Volcanoes National Park Monitoring eradication of European mouflon sheep from the Kahuku Unit of Hawai‘i Volcanoes National Park
European mouflon (Ovis gmelini musimon), the world's smallest wild sheep, have proliferated and degraded fragile native ecosystems in the Hawaiian Islands through browsing, bark stripping, and trampling, including native forests within Hawai‘i Volcanoes National Park (HAVO). HAVO resource managers initiated ungulate control efforts in the 469 km2 Kahuku Unit after it was acquired in 2003...
Authors
Seth Judge, Steven C. Hess, Jonathan K. Faford, Dexter Pacheco, Christina Leopold
Estimating vegetation biomass and cover across large plots in shrub and grass dominated drylands using terrestrial lidar and machine learning Estimating vegetation biomass and cover across large plots in shrub and grass dominated drylands using terrestrial lidar and machine learning
Terrestrial laser scanning (TLS) has been shown to enable an efficient, precise, and non-destructive inventory of vegetation structure at ranges up to hundreds of meters. We developed a method that leverages TLS collections with machine learning techniques to model and map canopy cover and biomass of several classes of short-stature vegetation across large plots. We collected high...
Authors
Kyle E. Anderson, Nancy F. Glenn, Lucas P. Spaete, Douglas J. Shinneman, David S. Pilliod, Robert Arkle, Susan K. McIlroy, DeWayne R. Derryberry
Characterizing sources of uncertainty from global climate models and downscaling techniques Characterizing sources of uncertainty from global climate models and downscaling techniques
In recent years climate model experiments have been increasingly oriented towards providing information that can support local and regional adaptation to the expected impacts of anthropogenic climate change. This shift has magnified the importance of downscaling as a means to translate coarse-scale global climate model (GCM) output to a finer scale that more closely matches the scale of...
Authors
Adrienne Wootten, Adam Terando, Brian J. Reich, Ryan P. Boyles, Fred Semazzi
Statistical design and analysis for plant cover studies with multiple sources of observation errors Statistical design and analysis for plant cover studies with multiple sources of observation errors
Effective wildlife habitat management and conservation requires understanding the factors influencing distribution and abundance of plant species. Field studies, however, have documented observation errors in visually estimated plant cover including measurements which differ from the true value (measurement error) and not observing a species that is present within a plot (detection error...
Authors
Wilson J. Wright, Kathryn M. Irvine, Jeffrey M . Warren, Jenny K. Barnett