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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42707

First-year survival of Lake Sturgeon reintroduced to the Maumee River First-year survival of Lake Sturgeon reintroduced to the Maumee River

Objective Lake Sturgeon Acipenser fulvescens have experienced large population declines due to overfishing, habitat degradation, and pollution. Due to these factors, Lake Sturgeon were extirpated from the Maumee River watershed (Ohio, United States). In 2018, a 20-year reintroduction program began that aims to establish a self-sustaining population in the Maumee River. To understand the...
Authors
Jorden R. McKenna, Justin A. Chiotti, Christopher Vandergoot, Richard Kraus, Matthew Faust, Eric Weimer, Matthew Cross, William D. Hintz

Elevated CO2 enables brackish marsh transgression into freshwater forested wetlands while stimulating CH4 emissions Elevated CO2 enables brackish marsh transgression into freshwater forested wetlands while stimulating CH4 emissions

Wetlands are significant carbon (C) sinks and are expected to promote greater C assimilation as atmospheric CO2 concentrations rise. However, the fate of C with environmental change along fresh-to-oligohaline wetland transitions is not well understood. We established an ex-situ mesocosm experiment to mimic future elevated atmospheric CO2 concentrations (eCO2, 720 ppm) versus current (380...
Authors
Luzhen Chen, Donald Schoolmaster, Ken Krauss, Camille Stagg, Nicole Cormier, Rebecca Moss, Yiyi Xiong, Nathaniel B. Weston

Introgression, phylogeography, and genomic species cohesion in the eastern North American white oak syngameon Introgression, phylogeography, and genomic species cohesion in the eastern North American white oak syngameon

Hybridization and interspecific gene flow play a substantial role in the evolution of plant taxa. The eastern North American white oak syngameon, a group of approximately 15 ecologically, morphologically and genomically distinguishable species, has long been recognised as a model system for studying introgressive hybridization in temperate trees. However, the prevalence, genomic context...
Authors
Gabe Ribicoff, Mira Garner, Kasey Pham, Kieren Althaus, Jeannine Cavendar-Bares, Andy Crowl, Samantha Gray, Paul F. Gugger, Marlene Hahn, S Liao, Paul Manos, Rebekah Mohn, Ian S. Pearse, Nicholas Steichmann, Ashley Tuffin, Alan T. Whittemore, Andrew Hipp

Assessing uncertainty in forecasts of refugia for Joshua trees using high-density distribution data Assessing uncertainty in forecasts of refugia for Joshua trees using high-density distribution data

Joshua trees (Yucca brevifolia and Yucca jaegeriana) are iconic, foundational species of the Mojave and Sonoran Deserts in North America. Due to their ecosystem importance, long generation times, and low resilience to disturbance, these hybridizing sister species are increasingly the focus of conservation efforts. Predicting Joshua tree responses to impending climate variability, along...
Authors
Daniel F. Shryock, Todd Esque, Gabrielle A. Berr, Lesley A. DeFalco

Population genomics of recovery and extinction in Hawaiian honeycreepers Population genomics of recovery and extinction in Hawaiian honeycreepers

Native Hawaiian forest birds are experiencing an unprecedented extinction crisis. In particular, the iconic Hawaiian honeycreeper radiation has declined to just 17 out of ∼60 species remaining, most threatened with extinction due to avian malaria. Here, we investigate the genomic signatures of these declines in three honeycreeper species: the critically endangered ʻakikiki (Oreomystis...
Authors
Christopher Kyriazis, Madhvi Venkatraman, Bryce Masuda, Cynthia Steiner, Loren Cassin-Sackett, Lisa H. Crampton, Alison Flanagan, Jeffrey T. Foster, Marlys Houck, Ann Misuraca, Eben H. Paxton, Jacqueline Robinson, Robert C. Fleischer, Oliver A. Ryder, Michael G. Campana, Aryn P. Wilder

Wake Atoll: Evaluation of plant biosecurity Wake Atoll: Evaluation of plant biosecurity

Introduced organisms can cause substantial effects across most landscapes. Island ecosystems, especially tropical islands, are at elevated risk from introduced organisms. The risks are even higher for tropical islands with moderate or high levels of transit, yet this can be minimized by application of appropriate biosecurity requirements. In this study, we examined the potential for non...
Authors
Corie Yanger, James D. Jacobi, Stephanie G. Yelenik, Stacie A. Hathaway

Land cover change within wetland complexes at Dixie Meadows, Churchill County, Nevada: 2015 – 2023 Land cover change within wetland complexes at Dixie Meadows, Churchill County, Nevada: 2015 – 2023

Dixie Meadows, Nevada, is a system of geothermal springs and seeps that feed a complex of marshes and wetland meadows that are located within lands managed by the Bureau of Land Management (BLM) and the Department of Defense (DOD). A previous U.S. Geological Survey report documented variability in satellite imagery-based land cover classifications for seven wetland complexes at near...
Authors
Joshua Caster, Joel B. Sankey, Nathaniel Bransky

Dead giveaway: Rising mortality rates suggest effectiveness of Lake Erie grass carp (Ctenopharyngodon idella) response Dead giveaway: Rising mortality rates suggest effectiveness of Lake Erie grass carp (Ctenopharyngodon idella) response

Grass carp (Ctenopharyngodon idella) are large, invasive fish that threaten Lake Erie’s economy and ecosystem. Incidental catches of grass carp have occurred since the 1980s in Lake Erie, while multi-day removal events were carried out in 2014 and 2017. To mitigate ecosystem impacts, a large-scale, multi-agency response to remove as many grass carp as possible from the Lake Erie basin (...
Authors
Kaitlen Lang, Christine M Mayer, Mark Richard Dufour, Song S. Qian, William D. Hintz, Patrick M. Kocovsky, Ryan Young, Matthew Ross Acre, Eric Weimer, Tammy L. Wilson, Chris M. Kemp, John M. Dettmers, Lucas Nathan, Ryan Brown

Evaluation of 6PPD-quinone lethal toxicity and sublethal effects on disease resistance and swimming fitness in coastal cutthroat trout (Oncorhynchus clarkii clarkii) Evaluation of 6PPD-quinone lethal toxicity and sublethal effects on disease resistance and swimming fitness in coastal cutthroat trout (Oncorhynchus clarkii clarkii)

6PPD-quinone (6PPDQ), derived from the tire-protectant 6PPD reacting with ozone, is an emerging contaminant of concern owing to its role in coho salmon (Oncorhynchus kisutch) deaths via urban runoff mortality syndrome (URMS). Given the impact of 6PPDQ on aquatic life in urban streams, we addressed the acute toxicity of 6PPDQ exposure on coastal cutthroat trout (CCT) (Oncorhynchus clarkii...
Authors
Prarthana Shankar, Ellie Maureen Dalsky, Joanne Salzer, Rachael F. Lane, Sophie Elizabeth Hammond, William N. Batts, Jacob L. Gregg, Justin Blaine Greer, Gael Kurath, Paul Hershberger, John Hansen

Novel adomaviruses associated with blotchy bass syndrome in black basses (Micropterus spp.) Novel adomaviruses associated with blotchy bass syndrome in black basses (Micropterus spp.)

Black bass (Micropterus spp.) are the most important warmwater game fishes in the United States. They have high socioeconomic and recreational value and support an important aquaculture industry. Since 2008, fisheries managers have been reporting the observation of hyperpigmented melanistic lesions (HPMLs) on smallmouth bass (M. dolomieu) in different ecoregions of the United States...
Authors
Luke R. Iwanowicz, Clayton D. Raines, Kelsey E. Young, Vicki S. Blazer, Heather L. Walsh, Geoff Smith, Cynthia Holt, John Odenkirk, Tom Jones, Jan-Michael Hessenauer, Morgan Alexandra Biggs, Christopher B. Buck, Justin Blaine Greer, Robert S. Cornman

Trends in richness and occupancy of Ugandan birds and relation to local tree cover Trends in richness and occupancy of Ugandan birds and relation to local tree cover

Changes in vegetation cover are occurring across sub-Saharan Africa and can have substantial effects on ecological communities, but limited data make understanding status and trends difficult for many taxa. We surveyed birds for several decades across Uganda using point counts. Using time-to-detection analysis in a trait-informed Bayesian multi-species occupancy framework, we model bird...
Authors
Ryan C. Burner, Evan M. Adams, Derek Pomeroy, Herbert Tushabe, Micheal Kibuule, Lars Jørgen Rostad, Zander S. Venter, Douglas Sheil

Shotgun sequencing of airborne eDNA achieves rapid assessment of whole biomes, population genetics and genomic variation Shotgun sequencing of airborne eDNA achieves rapid assessment of whole biomes, population genetics and genomic variation

Biodiversity and its associated genetic diversity are being lost at an unprecedented rate. Simultaneously, the distributions of flora, fauna, fungi, microbes and pathogens are rapidly changing. Novel technology can help to capture and record genetic diversity before it is lost and to measure population shifts and pathogen distributions. Here we report the rapid application of shotgun...
Authors
Orestis Nousias, Mark Mccauley, Maximilian R. Stammnitz, Jessica A. Farrell, Samantha A. Koda, Victoria Summers, Catherine B. Eastman, Fiona G. Duffy, Isabelle J. Duffy, Jenny Whilde, David J. Duffy
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