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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42773

Separable correlation and maximum likelihood Separable correlation and maximum likelihood

We consider estimation of the covariance matrix of a multivariate normal distribution when the correlation matrix is separable in the sense that it factors as a Kronecker product of two smaller matrices. A computationally convenient coordinate descent-type algorithm is developed for maximum likelihood estimation. Simulations indicate our method often gives smaller estimation error than...
Authors
Karl Oskar Ekvall, Brian R. Gray

Effects of brine contamination from energy development on wetland macroinvertebrate community structure in the Prairie Pothole Region Effects of brine contamination from energy development on wetland macroinvertebrate community structure in the Prairie Pothole Region

Wetlands in the Prairie Pothole Region (PPR) of North America support macroinvertebrate communities that are integral to local food webs and important to breeding waterfowl. Macroinvertebrates in PPR wetlands are primarily generalists and well adapted to within and among year changes in water permanence and salinity. The Williston Basin, a major source of U.S. energy production...
Authors
Todd M. Preston, Michael J. Borgreen, Andrew M. Ray

A tale of two wildfires; testing detection and prediction of invasive species distributions using models fit with topographic and spectral indices A tale of two wildfires; testing detection and prediction of invasive species distributions using models fit with topographic and spectral indices

Context Developing species distribution models (SDMs) to detect invasive species cover and evaluate habitat suitability are high priorities for land managers. Objectives We tested SDMs fit with different variable combinations to provide guidelines for future invasive species model development based on transferability between landscapes. Methods Generalized linear model, boosted...
Authors
Amanda M. West, Paul H. Evangelista, Catherine S. Jarnevich, Darin Shulte

Stream fish colonization but not persistence varies regionally across a large North American river basin Stream fish colonization but not persistence varies regionally across a large North American river basin

Many species have distributions that span distinctly different physiographic regions, and effective conservation of such taxa will require a full accounting of all factors that potentially influence populations. Ecologists recognize effects of physiographic differences in topography, geology and climate on local habitat configurations, and thus the relevance of landscape heterogeneity to...
Authors
Kit Wheeler, Seth J. Wenger, Stephen J. Walsh, Zachary P. Martin, Howard L. Jelks, Mary Freeman

Quarterly wildlife mortality report April 2018 Quarterly wildlife mortality report April 2018

No abstract available.
Authors
Bryan J. Richards, Barbara Bodenstein, Anne Ballmann, C. LeAnn White

Characterization of Plasmodium relictum, a cosmopolitan agent of avian malaria Characterization of Plasmodium relictum, a cosmopolitan agent of avian malaria

Background Microscopic research has shown that Plasmodium relictum is the most common agent of avian malaria. Recent molecular studies confirmed this conclusion and identified several mtDNA lineages, suggesting the existence of significant intra-species genetic variation or cryptic speciation. Most identified lineages have a broad range of hosts and geographical distribution. Here, a...
Authors
Gediminas Valkiunas, Mikas Ilgunas, Dovile Bukauskaite, Karin Fragner, Herbert Weissenbock, Carter T. Atkinson, Tatjana Iezhova

Ecological and management implications of climate change induced shifts in phenology of coastal fish and wildlife species in the Northeast CASC region Ecological and management implications of climate change induced shifts in phenology of coastal fish and wildlife species in the Northeast CASC region

Climate change is causing species to shift their phenology, or the timing of recurring life events such as migration and reproduction, in variable and complex ways. This can potentially result in mismatches or asynchronies in food and habitat resources that negatively impact individual fitness, population dynamics, and ecosystem function. Numerous studies have evaluated phenological...
Authors
Michelle D. Staudinger, Adrian Jordaan

Plant and microbial biomarkers suggest mechanisms of soil organic carbon accumulation in a Mojave Desert ecosystem under elevated CO2 Plant and microbial biomarkers suggest mechanisms of soil organic carbon accumulation in a Mojave Desert ecosystem under elevated CO2

We investigated how properties of soil organic matter (SOM) were altered after 10 years exposure to elevated atmospheric CO2 concentration ([CO2]) in a Mojave Desert ecosystem, using plant and microbial biomarkers. We focused on roles of Larrea tridentata, the dominant evergreen shrub which form islands of fertility, and biological soil crusts which have extensive cover in plant...
Authors
Akihiro Koyama, Benjamin Harlow, Cheryl R. Kuske, Jayne Belnap, R. Dave Evans

Spatial distribution of estuarine diamond-backed terrapins (Malaclemys terrapin) and risk analysis from commercial blue crab (Callinectes sapidus) trapping at the Savannah Coastal Refuges Complex, USA Spatial distribution of estuarine diamond-backed terrapins (Malaclemys terrapin) and risk analysis from commercial blue crab (Callinectes sapidus) trapping at the Savannah Coastal Refuges Complex, USA

The diamond-backed terrapin (Malaclemys terrapin) is a small estuarine turtle distributed along the Atlantic and Gulf Coasts of the USA. Terrapin populations are declining throughout their range and one of the main causes is mortality by drowning as bycatch in commercially-fished blue crab (Callinetes sapidus) traps (aka pots). We conducted head counts of terrapins and documented the...
Authors
Jeffrey E. Lovich, Meagan Thomas, Kirsten E. Ironside, Charles B. Yackulic, Shellie R. Puffer

Exxon Valdez oil spill long-term herring research and monitoring program final report Exxon Valdez oil spill long-term herring research and monitoring program final report

This study includes annual field surveys of Ichthyophonus, viral hemorrhagic septicemia virus, and erythrocytic necrosis virus in adult and juvenile Pacific herring (Clupea pallasii) in Prince William Sound, Alaska and several reference populations in Alaska, British Columbia, and Washington. Results from controlled experimental studies with Ichthyophonus indicated that: • Pacific...
Authors
Paul Hershberger

Atmospheric and surface climate associated with 1986–2013 wildfires in North America Atmospheric and surface climate associated with 1986–2013 wildfires in North America

We analyze climate simulations conducted with the RegCM3 regional climate model on 50‐ and 15‐km model grids to diagnose the dependence of wildfire incidence and area burned variations on monthly climate long‐term means and anomalies over North America for the period 1986–2013. We created a new wildfire database by merging the Fire Program Analysis Fire‐Occurrence Database, the National
Authors
Steven W. Hostetler, Patrick J. Bartlein, Jay R. Alder

On the relationship between conditional (CAR) and simultaneous (SAR) autoregressive models On the relationship between conditional (CAR) and simultaneous (SAR) autoregressive models

We clarify relationships between conditional (CAR) and simultaneous (SAR) autoregressive models. We review the literature on this topic and find that it is mostly incomplete. Our main result is that a SAR model can be written as a unique CAR model, and while a CAR model can be written as a SAR model, it is not unique. In fact, we show how any multivariate Gaussian distribution on a...
Authors
Jay M. Ver Hoef, Ephraim M. Hanksb, Mevin Hooten
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