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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42876

Using dynamic population simulations to extend resource selection analyses and prioritize habitats for conservation Using dynamic population simulations to extend resource selection analyses and prioritize habitats for conservation

Prioritizing habitats for conservation is a challenging task, particularly for species with fluctuating populations and seasonally dynamic habitat needs. Although the use of resource selection models to identify and prioritize habitat for conservation is increasingly common, their ability to characterize important long-term habitats for dynamic populations are variable. To examine how...
Authors
Julie A. Heinrichs, Cameron L. Aldridge, Michael S. O’Donnell, Nathan Schumaker

Spatial and temporal distribution of bull trout (Salvelinus confluentus)-size fish near the floating surface collector in the North Fork Reservoir, Oregon, 2016 Spatial and temporal distribution of bull trout (Salvelinus confluentus)-size fish near the floating surface collector in the North Fork Reservoir, Oregon, 2016

Acoustic cameras were used to assess the behavior and abundance of bull trout (Salvelinus confluentus)-size fish at the entrance to the North Fork Reservoir juvenile fish floating surface collector (FSC). The purpose of the FSC is to collect downriver migrating juvenile salmonids at the North Fork Dam, and safely route them around the hydroelectric projects. The objective of the acoustic...
Authors
Noah S. Adams, Collin D. Smith

Tolerance to disturbance regulated by attractiveness of resources: A case study of desert bighorn sheep within the River Mountains, Nevada Tolerance to disturbance regulated by attractiveness of resources: A case study of desert bighorn sheep within the River Mountains, Nevada

Human activity may mimic predation risks for wildlife by causing abandonment of foraging sites and increasing expenditure of energy. Animals that can tolerate nonlethal disturbance may minimize these fitness costs. We examine this aspect of the risk—disturbance hypothesis by first analyzing recent habitat use of desert bighorn sheep relative to areas of attraction and disturbance. We...
Authors
Chris E. Lowrey, Kathleen M. Longshore

In-vitro replication of Chelonid herpesvirus 5 in organotypic skin cultures from Hawaiian green turtles (Chelonia mydas) In-vitro replication of Chelonid herpesvirus 5 in organotypic skin cultures from Hawaiian green turtles (Chelonia mydas)

Fibropapillomatosis (FP) is a tumor disease of marine turtles associated with Chelonid herpesvirus 5 (ChHV5) that has historically been refractory to growth in tissue culture. Here, we show for the first time de novo formation of ChHV5-positive intranuclear inclusions in cultured green turtle cells, which is indicative for active lytic replication of the virus. The minimal requirements...
Authors
Thierry M. Work, Julie Dagenais, Tina Weatherby, George H. Balazs, Mathias Ackermann

Sylvatic plague vaccine partially protects prairie dogs (Cynomys spp.) in field trials Sylvatic plague vaccine partially protects prairie dogs (Cynomys spp.) in field trials

Sylvatic plague, caused by Yersinia pestis, frequently afflicts prairie dogs (Cynomys spp.), causing population declines and local extirpations. We tested the effectiveness of bait-delivered sylvatic plague vaccine (SPV) in prairie dog colonies on 29 paired placebo and treatment plots (1–59 ha in size; average 16.9 ha) in 7 western states from 2013 to 2015. We compared relative abundance...
Authors
Tonie E. Rocke, Daniel W. Tripp, Robin E. Russell, Rachel C. Abbott, Katherine Richgels, Marc R. Matchett, Dean E. Biggins, Randall Griebel, Greg Schroeder, Shaun M. Grassel, David R. Pipkin, Jennifer Cordova, Adam Kavalunas, Brian Maxfield, Jesse T. Boulerice, Michael W. Miller

Juvenile salmonid monitoring in the White Salmon River, Washington, post-Condit Dam removal, 2016 Juvenile salmonid monitoring in the White Salmon River, Washington, post-Condit Dam removal, 2016

Condit Dam, at river kilometer 5.3 on the White Salmon River, Washington, was breached in 2011 and removed completely in 2012, allowing anadromous salmonids access to habitat that had been blocked for nearly 100 years. A multi-agency workgroup concluded that the preferred salmonid restoration alternative was natural recolonization with monitoring to assess efficacy, followed by a...
Authors
Ian G. Jezorek, Jill M. Hardiman

Evidence of fuels management and fire weather influencing fire severity in an extreme fire event Evidence of fuels management and fire weather influencing fire severity in an extreme fire event

Following changes in vegetation structure and pattern, along with a changing climate, large wildfire incidence has increased in forests throughout the western U.S. Given this increase there is great interest in whether fuels treatments and previous wildfire can alter fire severity patterns in large wildfires. We assessed the relative influence of previous fuels treatments (including...
Authors
Jamie M Lydersen, Brandon M. Collins, Matthew L. Brooks, John R. Matchett, Kristen L. Shive, Nicholas A. Povak, Van R. Kane, Douglas F. Smith

Prevalence of Batrachochytrium dendrobatidis and B. salamandrivorans in the Gulf Coast Waterdog, Necturus beyeri, from Southeast Louisiana, USA Prevalence of Batrachochytrium dendrobatidis and B. salamandrivorans in the Gulf Coast Waterdog, Necturus beyeri, from Southeast Louisiana, USA

The globally widespread amphibian fungal pathogen Batrachochytrium dendrobatidis (Bd) has been linked to amphibian declines worldwide (Lips et al. 2006; Skerratt et al. 2007). In Louisiana, USA, Bd has been found in several amphibian species (Chatfield et al. 2012; Rothermel et al. 2008), but to our knowledge no population-level die-offs have been observed. Published literature on Bd...
Authors
Brad M. Glorioso, J. Hardin Waddle, Corinne L. Richards-Zawacki

RNA sequencing analysis of transcriptional change in the freshwater mussel Elliptio complanata after environmentally relevant sodium chloride exposure RNA sequencing analysis of transcriptional change in the freshwater mussel Elliptio complanata after environmentally relevant sodium chloride exposure

To identify potential biomarkers of salt stress in a freshwater sentinel species, we examined transcriptional responses of the common mussel Elliptio complanata to controlled sodium chloride (NaCl) exposures. Ribonucleic acid sequencing (RNA-Seq) of mantle tissue identified 481 transcripts differentially expressed in adult mussels exposed to 2 ppt NaCl (1.2 ppt chloride) for 7 d, of...
Authors
Laura S. Robertson, Heather S. Galbraith, Deborah D. Iwanowicz, Carrie J. Blakeslee, Robert S. Cornman

Can we save large carnivores without losing large carnivore science? Can we save large carnivores without losing large carnivore science?

Large carnivores are depicted to shape entire ecosystems through top-down processes. Studies describing these processes are often used to support interventionist wildlife management practices, including carnivore reintroduction or lethal control programs. Unfortunately, there is an increasing tendency to ignore, disregard or devalue fundamental principles of the scientific method when
Authors
Benjamin L. Allen, Lee R. Allen, Henrik Andren, Guy Ballard, Luigi Boitani, Richard M. Engeman, Peter J.S. Fleming, Peter M. Haswell, Adam T. Ford, Rafal Kowalczyk, L. David Mech, John Linnell, Daniel M. Parker

Structured decision making for conservation of bull trout (Salvelinus confluentus) in Long Creek, Klamath River Basin, south-central Oregon Structured decision making for conservation of bull trout (Salvelinus confluentus) in Long Creek, Klamath River Basin, south-central Oregon

With the decline of bull trout (Salvelinus confluentus), managers face multiple, and sometimes contradictory, management alternatives for species recovery. Moreover, effective decision-making involves all stakeholders influenced by the decisions (such as Tribal, State, Federal, private, and non-governmental organizations) because they represent diverse objectives, jurisdictions, policy...
Authors
Joseph R. Benjamin, Kevin McDonnell, Jason B. Dunham, William R. Brignon, James T. Peterson

Movements of four native Hawaiian birds across a naturally fragmented landscape Movements of four native Hawaiian birds across a naturally fragmented landscape

Animals often increase their fitness by moving across space in response to temporal variation in habitat quality and resource availability, and as a result of intra and inter-specific interactions. The long-term persistence of populations and even whole species depends on the collective patterns of individual movements, yet animal movements have been poorly studied at the landscape level...
Authors
Jessie L. Knowlton, David J. Flaspohler, Eben H. Paxton, Tadashi Fukami, Christian P. Giardina, Daniel S. Gruner, Erin E. Wilson Rankin
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