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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 43019

Persistence of historical population structure in an endangered species despite near-complete biome conversion in California's San Joaquin Desert Persistence of historical population structure in an endangered species despite near-complete biome conversion in California's San Joaquin Desert

Genomic responses to habitat conversion can be rapid, providing wildlife managers with time-limited opportunities to enact recovery efforts that use population connectivity information that reflects predisturbance landscapes. Despite near-complete biome conversion, such opportunities may still exist for the endemic fauna and flora of California's San Joaquin Desert, but comprehensive...
Authors
Jonathan Q. Richmond, Dustin A. Wood, Michael F. Westphal, Amy G. Vandergast, Adam D. Leache, Lawrence Saslaw, H. Scott Butterfield, Robert N. Fisher

Unraveling the disease consequences and mechanisms of modular structure in animal social networks Unraveling the disease consequences and mechanisms of modular structure in animal social networks

Disease risk is a potential cost of group living. Although modular organization is thought to reduce this cost in animal societies, empirical evidence toward this hypothesis has been conflicting. We analyzed empirical social networks from 43 animal species to motivate our study of the epidemiological consequences of modular structure in animal societies. From these empirical studies, we...
Authors
Pratha Sah, Stephan T. Leu, Paul C. Cross, Peter J. Hudson, Shweta Bansal

Is GPS telemetry location error screening beneficial? Is GPS telemetry location error screening beneficial?

The accuracy of global positioning system (GPS) locations obtained from study animals tagged with GPS monitoring devices has been a concern as to the degree it influences assessments of movement patterns, space use, and resource selection estimates. Many methods have been proposed for screening data to retain the most accurate positions for analysis, based on dilution of precision (DOP)...
Authors
Kirsten E. Ironside, David J. Mattson, Terence R. Arundel, Jered R. Hansen

A hierarchical model for estimating the spatial distribution and abundance of animals detected by continuous-time recorders A hierarchical model for estimating the spatial distribution and abundance of animals detected by continuous-time recorders

Motivation Several spatial capture-recapture (SCR) models have been developed to estimate animal abundance by analyzing the detections of individuals in a spatial array of traps. Most of these models do not use the actual dates and times of detection, even though this information is readily available when using continuous-time recorders, such as microphones or motion-activated cameras...
Authors
Robert Dorazio, K. Ullas Karanth

Characterization of the juvenile green turtle (Chelonia mydas) microbiome throughout an ontogenetic shift from pelagic to neritic habitats Characterization of the juvenile green turtle (Chelonia mydas) microbiome throughout an ontogenetic shift from pelagic to neritic habitats

The gut microbiome of herbivorous animals consists of organisms that efficiently digest the structural carbohydrates of ingested plant material. Green turtles (Chelonia mydas) provide an interesting model of change in these microbial communities because they undergo a pronounced shift from a surface-pelagic distribution and omnivorous diet to a neritic distribution and herbivorous diet...
Authors
James T. Price, Frank V. Paladino, Margaret M. Lamont, Blair E. Witherington, Scott T. Bates, Tanya Soule

Estimating loss of Brucella abortus antibodies from age-specific serological data in elk Estimating loss of Brucella abortus antibodies from age-specific serological data in elk

Serological data are one of the primary sources of information for disease monitoring in wildlife. However, the duration of the seropositive status of exposed individuals is almost always unknown for many free-ranging host species. Directly estimating rates of antibody loss typically requires difficult longitudinal sampling of individuals following seroconversion. Instead, we propose a...
Authors
J. A. Benavides, D. Caillaud, B. M. Scurlock, E. J. Maichak, W.H. Edwards, Paul C. Cross

Performance and retention of lightweight satellite radio tags applied to the ears of polar bears (Ursus maritimus) Performance and retention of lightweight satellite radio tags applied to the ears of polar bears (Ursus maritimus)

Background Satellite telemetry studies provide information that is critical to the conservation and management of species affected by ecological change. Here we report on the performance and retention of two types (SPOT-227 and SPOT-305A) of ear-mounted Argos-linked satellite transmitters (i.e., platform transmitter terminal, or PTT) deployed on free-ranging polar bears in Eastern...
Authors
Oystein Wiig, Erik W. Born, Kristin L. Laidre, Rune Dietz, Mikkel Villum Jensen, George M. Durner, Anthony M. Pagano, Eric V. Regehr, Michelle St. Martin, Stephen N. Atkinson, Markus Dyck

Local and cross-seasonal associations of climate and land use with abundance of monarch butterflies Danaus plexippus Local and cross-seasonal associations of climate and land use with abundance of monarch butterflies Danaus plexippus

Quantifying how climate and land use factors drive population dynamics at regional scales is complex because it depends on the extent of spatial and temporal synchrony among local populations, and the integration of population processes throughout a species’ annual cycle. We modeled weekly, site-specific summer abundance (1994–2013) of monarch butterflies Danaus plexippus at sites across...
Authors
Sarah P. Saunders, Leslie Ries, Karen S. Oberhasuer, Wayne E. Thogmartin, Elise F. Zipkin

Habitat degradation affects the summer activity of polar bears Habitat degradation affects the summer activity of polar bears

Understanding behavioral responses of species to environmental change is critical to forecasting population-level effects. Although climate change is significantly impacting species’ distributions, few studies have examined associated changes in behavior. Polar bear (Ursus maritimus) subpopulations have varied in their near-term responses to sea ice decline. We examined behavioral...
Authors
Jasmine V. Ware, Karyn D. Rode, Jeffrey F. Bromaghin, David C. Douglas, Ryan H. Wilson, Eric V. Regehr, Steven C. Amstrup, George M. Durner, Anthony M. Pagano, Jay Olson, Charles T. Robbins, Heiko T Jansen

Long-term and widespread changes in agricultural practices influence ring-necked pheasant abundance in California Long-term and widespread changes in agricultural practices influence ring-necked pheasant abundance in California

Declines in bird populations in agricultural regions of North America and Europe have been attributed to agricultural industrialization, increases in use of agrochemical application, and increased predation related to habitat modification. Based on count data compiled from Breeding Bird Survey (BBS) from 1974 to 2012, Christmas Bird Count (CBC) collected from 1914 to 2013, and hunter...
Authors
Peter S. Coates, Brianne E. Brussee, Kristy B. Howe, Joseph P. Fleskes, Ian Dwight, Daniel P. Connelly, Matt G. Meshriy, Scott C. Gardner

Predicting wading bird and aquatic faunal responses to ecosystem restoration scenarios Predicting wading bird and aquatic faunal responses to ecosystem restoration scenarios

In large-scale conservation decisions, scenario planning identifies key uncertainties of ecosystem function linked to ecological drivers affected by management, incorporates ecological feedbacks, and scales up to answer questions robust to alternative futures. Wetland restoration planning requires an understanding of how proposed changes in surface hydrology, water storage, and landscape
Authors
James M. Beerens, Joel C. Trexler, Christopher P. Catano

Upper thermal limits of growth in brook trout and their relationship to stress physiology Upper thermal limits of growth in brook trout and their relationship to stress physiology

Despite the threat of climate change, the physiological mechanisms responsible for reduced performance at high temperatures remain unclear for most species. Elevated but sublethal temperatures may act via endocrine and cellular stress responses to limit performance in important life-history traits such as growth. Here, brook trout (Salvelinus fontinalis) subjected to chronically elevated...
Authors
Joseph G Chadwick, Stephen D. McCormick
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