Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42768
The mysterious case of the missing razor clams The mysterious case of the missing razor clams
Oceans are changing and these changes are affecting animals that live there. Animals respond differently to changes in water temperature, food availability, or contaminants. Those responses can be seen in their genes. Gene transcription is a tool that allows scientists to see the response of an animal’s genes to its environment. We used gene transcription to compare two populations of...
Authors
Heather Coletti, Lizabeth Bowen, Brenda Ballachey, Tammy L. Wilson, Shannon C. Waters-Dynes, Michael Booz, Katrina Counihan, Tuula E. Hollmen, Benjamin Pister
Advances in coral immunity ‘omics in response to disease outbreaks Advances in coral immunity ‘omics in response to disease outbreaks
Coral disease has progressively become one of the most pressing issues affecting coral reef survival. In the last 50 years, several reefs throughout the Caribbean have been severely impacted by increased frequency and intensity of disease outbreaks leading to coral death. A recent example of this is stony coral tissue loss disease which has quickly spread throughout the Caribbean...
Authors
Nikki Traylor-Knowles, Andrew C. Baker, Kelsey M. Beavers, Neha Garg, Jeffrey R. Guyon, Aine C. Hawthorn, Nicholas J. MacKnight, Mónica Medina, Laura D. Mydlarz, Esther C. Peters, Julia Marie Stewart, Michael S. Studivan, Joshua D. Voss
Selecting auditory alerting stimuli for eagles on the basis of auditory evoked potentials Selecting auditory alerting stimuli for eagles on the basis of auditory evoked potentials
Development of wind energy facilities results in interactions between wildlife and wind turbines. Raptors, including bald and golden eagles, are among the species known to incur mortality from these interactions. Several alerting technologies have been proposed to mitigate this mortality by increasing eagle avoidance of wind energy facilities. However, there has been little attempt to...
Authors
Benjamin Goller, Patrice Baumhardt, Ernesto Dominguez-Villegas, Todd E. Katzner, Esteban Fernandez-Juricic, Jeffrey R. Lucas
Predictive accuracy of post-fire conifer death declines over time in models based on crown and bole injury Predictive accuracy of post-fire conifer death declines over time in models based on crown and bole injury
A key uncertainty of empirical models of post-fire tree mortality is understanding the drivers of elevated post-fire mortality several years following fire, known as delayed mortality. Delayed mortality can represent a substantial fraction of mortality, particularly for large trees that are a conservation focus in western US coniferous forests. Current post-fire tree mortality models...
Authors
Timothy M. Shearman, J. Morgan Varner, Sharon M. Hood, Phillip J. van Mantgem, C. Alina Cansler, Micah Wright
Phylogenetic risk assessment is robust for forecasting the impact of European insects on North American conifers Phylogenetic risk assessment is robust for forecasting the impact of European insects on North American conifers
Some introduced species cause severe damage, although the majority have little impact. Robust predictions of which species are most likely to cause substantial impacts could focus efforts to mitigate those impacts or prevent certain invasions entirely. Introduced herbivorous insects can reduce crop yield, fundamentally alter natural and managed forest ecosystems, and are unique among...
Authors
Daniel R. Uden, Angela M. Mech, Nathan P. Havill, Ashley N. Schulz, Matthew P Ayers, Daniel A. Herms, Angela Marie Hoover, Kamal JK Gandhi, Ruth A. Hufbauer, Andrew M. Liebhold, Travis D Marisco, Kenneth F. Raffa, Kathryn A. Thomas, Patrick C. Tobin, Craig R. Allen
Decision support for aquatic restoration based on species-specific responses to disturbance Decision support for aquatic restoration based on species-specific responses to disturbance
Disturbances to aquatic habitats are not uniformly distributed within the Great Lakes and acute effects can be strongest in nearshore areas where both landscape and within lake effects can have strong influence. Furthermore, different fish species respond to disturbances in different ways. A means to identify and evaluate locations and extent of disturbances that affect fish is needed...
Authors
James E. McKenna, Catherine Riseng, Kevin Wehrly
Repeat bathymetric surveys and model simulation of sedimentation processes near fish spawning placements, Detroit and St. Clair Rivers, Michigan Repeat bathymetric surveys and model simulation of sedimentation processes near fish spawning placements, Detroit and St. Clair Rivers, Michigan
Nine rock-rubble fish spawning placements, or artificial reef complexes, constructed in the Detroit and St. Clair Rivers between 2004 to 2018 were surveyed periodically with multibeam sonar. These serial bathymetric surveys, conducted in 2015, 2018, 2021, and 2022, identified active sand bedform fields impinging two reef complexes: Fighting Island in the Detroit River and Middle Channel...
Authors
Paul J. Kinzel, Gregory W. Kennedy, Taylor Dudunake
Channel mapping of the Colorado River from Glen Canyon Dam to Lees Ferry in Glen Canyon National Recreation Area, Arizona Channel mapping of the Colorado River from Glen Canyon Dam to Lees Ferry in Glen Canyon National Recreation Area, Arizona
Bathymetric and topographic data were collected from May 2013 to February 2016 along the 15.84-mile reach of the Colorado River spanning from Glen Canyon Dam to Lees Ferry in Glen Canyon National Recreation Area, Arizona. Channel bathymetry was mapped using multibeam and singlebeam echo sounders; subaerial topography was mapped using a combination of ground-based total stations and...
Authors
Matt Kaplinski, Joseph E. Hazel, Paul E. Grams, Tom Gushue, Daniel D. Buscombe, Keith Kohl
Are existing modeling tools useful to evaluate outcomes in mangrove restoration and rehabilitation projects? A minireview Are existing modeling tools useful to evaluate outcomes in mangrove restoration and rehabilitation projects? A minireview
Ecosystem modeling is a critical process for understanding complex systems at spatiotemporal scales needed to conserve, manage, and restore ecosystem services (ESs). Although mangrove wetlands are sources of ESs worth billions of dollars, there is a lack of modeling tools. This is reflected in our lack of understanding of mangroves’ functional and structural attributes. Here, we discuss...
Authors
Victor H. Rivera-Monroy, Xiaochen Zhao, Hongqing Wang, Zuo G. Xue
Genetic structure and historic demography of endangered unarmoured threespine stickleback at southern latitudes signals a potential new management approach Genetic structure and historic demography of endangered unarmoured threespine stickleback at southern latitudes signals a potential new management approach
Habitat loss, flood control infrastructure, and drought have left most of southern California and northern Baja California's native freshwater fish near extinction, including the endangered unarmoured threespine stickleback (Gasterosteus aculeatus williamsoni). This subspecies, an unusual morph lacking the typical lateral bony plates of the G. aculeatus complex, occurs at arid southern...
Authors
Rachel Turba, Jonathan Q. Richmond, Sorel Fitz-Gibbon, Marco Morselli, Robert N. Fisher, Camm C. Swift, Gorgonio Ruiz-Campos, Adam R. Backlin, Chris Dellith, David K. Jacobs
Lake Superior Kiyi reproductive biology Lake Superior Kiyi reproductive biology
Objective The Lake Superior Kiyi Coregonus kiyi is an understudied species being considered for reintroduction into Laurentian Great Lakes where it no longer occurs. Herein, we provide descriptions of Kiyi reproductive biology with the intention of guiding potential gamete collections for propagation.Methods Data were collected on Kiyi spawning timing, spawning locations, spawning season...
Authors
Mark Vinson, Matthew E. Herbert, Amanda Susanne Ackiss, Jamie A. Dobosenski, Lori M. Evrard, Owen Gorman, Joshua F Lyons, Sydney B Phillips, Daniel L. Yule
Immunogenicity, safety, and anti-viral efficacy of a subunit SARS-CoV-2 vaccine candidate in captive black-footed ferrets (Mustela nigripes) and their susceptibility to viral challenge Immunogenicity, safety, and anti-viral efficacy of a subunit SARS-CoV-2 vaccine candidate in captive black-footed ferrets (Mustela nigripes) and their susceptibility to viral challenge
A preliminary vaccination trial against the emergent pathogen, SARS-CoV-2, was completed in captive black-footed ferrets (Mustela nigripes; BFF) to assess safety, immunogenicity, and anti-viral efficacy. Vaccination and boosting of 15 BFF with purified SARS-CoV-2 S1 subunit protein produced a nearly 150-fold increase in mean antibody titers compared to pre-vaccination titers. Serum...
Authors
Ariel Elizabeth Leon, Della Garelle, Airn Hartwig, Elizabeth Falendysz, Hon S. Ip, Julia S. Lankton, Tyler Tretten, Terry Spraker, Richard Bowen, Tonie E. Rocke