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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42702

Spatial capture-recapture reveals age- and sex-specific survival and movement in stream amphibians Spatial capture-recapture reveals age- and sex-specific survival and movement in stream amphibians

Life history information sets the foundation for our understanding of ecology and conservation requirements. For many species, this information is lacking even for basic demographic rates such as survival and movement. When survival and movement estimates are available, they are often derived from mixed demographic groups and do not consider differences among life stages or sexes, which...
Authors
R. Ken Honeycutt, Justin M Garwood, Winsor H. Lowe, Blake R. Hossack

Biocrust science and global change Biocrust science and global change

Global environmental changes such as climate and land‐use change affect ecosystems worldwide, and this New Phytologist Virtual Issue brings together fundamental research questions and novel approaches associated with the study of biological soil crusts in the context of such shifts. In a changing world, organisms can display a limited set of responses that will determine their...
Authors
Sasha C. Reed, Manuel Delgado-Baquerizo, Scott Ferrenberg

Age truncation of alewife in Lake Michigan Age truncation of alewife in Lake Michigan

Empirical evidence has shown increased variability in harvest and recruitment of exploited fish populations, which can result directly from exploitation or indirectly from interactions between external drivers and the internal dynamics of age-structured populations. We investigated whether predation in a freshwater system could affect a prey fish population, in the same way fishing...
Authors
T. Vidal, Brian J. Irwin, Charles P. Madenjian, S. J. Wenger

Environmental DNA assays for invasive populations of the Black Carp, Mylopharyngodon piceus, in North America Environmental DNA assays for invasive populations of the Black Carp, Mylopharyngodon piceus, in North America

The Black Carp, Mylopharyngodon piceus, is an increasingly widespread invasive species in North America that threatens freshwater mussel populations. We developed four qPCR assays for detecting environmental DNA (eDNA) from these Black Carp populations. Assays were designed to target four mitochondrial DNA loci and were based on 34 complete mitochondrial genome sequences, including 29...
Authors
Xin Guan, E.M. Monroe, K.D. Bockrath, Erica L. Mize, C.B. Rees, Denise L. Lindsay, Kelly L. Baerwaldt, Leo Nico, Richard F. Lance

Diel feeding behavior in a partially migrant Mysis population: A benthic-pelagic comparison Diel feeding behavior in a partially migrant Mysis population: A benthic-pelagic comparison

Populations that exhibit partial migration include migrants and non-migrants. For benthic-pelagic organisms that exhibit partial diel vertical migration (PDVM), migrants and non-migrants spend different amounts of time in benthic and pelagic foraging arenas over a diel cycle. For example, mysids exhibit PDVM and can feed on benthic and pelagic resources. Migratory individuals are assumed...
Authors
Brian O’Malley, Jason D. Stockwell

Cohesive framework for modeling plant cover class data Cohesive framework for modeling plant cover class data

The study of plant distribution and abundance is a fundamental pursuit in ecology and conservation biology. Measuring plant abundance by visually assessing percent cover and recording a cover class is a common field method that yields ordinal data. Statistical models for ordinal data exist but entail cumbersome interpretations and sometimes restrictive assumptions.We propose a Bayesian
Authors
Kathryn Irvine, Wilson J. Wright, Erin K. Shanahan, Thomas J. Rodhouse

Spatiotemporal variability in energetic condition of alewife and round goby in Lake Michigan Spatiotemporal variability in energetic condition of alewife and round goby in Lake Michigan

Pelagic-oriented alewife (Alosa pseudoharengus) and benthic-oriented round goby (Neogobius melanostomus) are two important prey fishes in the Laurentian Great Lakes. In 2015, we evaluated their seasonal total energy (TE) across nine Lake Michigan transects. Round goby contained at least 48% more kilojoules of TE than alewife of equal length during spring and summer. TE varied spatially...
Authors
David Bunnell, Steven A. Pothoven, Patricia Dieter, Lauren A. Eaton, David Warner, Ashley K. Elgin, Lyuba E. Burlakova, Alexander Y. Karatayev

Estimating visitor use and economic contributions of National Park visitor spending Estimating visitor use and economic contributions of National Park visitor spending

This chapter provides an overview of the National Park Service (NPS) methods for estimating visitor spending and calculating economic contributions of visitor spending in terms of jobs supported, wage and labor income, and total economic activity. The Visitor Spending Effects model combines visitor spending patterns and trip characteristic data with visitor use data to estimate total...
Authors
Lynne Koontz, Catherine Cullinane Thomas

Filling knowledge gaps in a threatened shorebird flyway through satellite tracking Filling knowledge gaps in a threatened shorebird flyway through satellite tracking

Satellite‐based technologies that track individual animal movements enable the mapping of their spatial and temporal patterns of occurrence. This is particularly useful in poorly studied or remote regions where there is a need for the rapid gathering of relevant ecological knowledge to inform management actions. One such region is East Asia, where many intertidal habitats are being...
Authors
Yin-Chi Chan, T. Lee Tibbitts, Tamar Lok, Chris Hassell, He-Bo Peng, Zhijun Ma, Zhengwang Zhang, Theunis Piersma

Improving population estimates of threatened spectacled eiders: Correcting aerial counts for visibility bias Improving population estimates of threatened spectacled eiders: Correcting aerial counts for visibility bias

Listed as threatened under the Endangered Species Act in 1993, the Spectacled Eider (Somateria fischeri) population in western Alaska has since rebounded, prompting an assessment of their suitability for delisting. This assessment, however, is limited by aerial-based population estimates that are incompletely corrected for unobserved eiders. Notably, aerial counts of eiders are corrected...
Authors
Tyler Lewis, Michael Swaim, Joel A. Schmutz, Julian Fischer

Freezing resistance, safety margins, and survival vary among big sagebrush populations across the western United States Freezing resistance, safety margins, and survival vary among big sagebrush populations across the western United States

Premise Physiological responses to temperature extremes are considered strong drivers of species’ demographic responses to climate variability. Plants are typically classified as either avoiders or tolerators in their freezing‐resistance mechanism, but a gradient of physiological‐threshold freezing responses may exist among individuals of a species. Moreover, adaptive significance of...
Authors
Brynne Lazarus, Matthew J. Germino, Bryce A. Richardson

A phylogenomic supertree of birds A phylogenomic supertree of birds

It has long been appreciated that analyses of genomic data (e.g., whole genome sequencing or sequence capture) have the potential to reveal the tree of life, but it remains challenging to move from sequence data to a clear understanding of evolutionary history, in part due to the computational challenges of phylogenetic estimation using genome-scale data. Supertree methods solve that...
Authors
Rebecca T Kimball, Carl H Oliveros, Ning Wang, Noor D White, F. Keith Barker, Daniel J Field, Daniel T Ksepka, Terry Chesser, Robert G Moyle, Michael J Braun, Robb T Brumfield, Brant C Faircloth, Brian Tilston-Smith, Edward L Braun
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