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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42707

Climate change adaptation for coastal national wildlife refuges Climate change adaptation for coastal national wildlife refuges

National Wildlife Refuges (NWRs) along the East Coast of the United States protect habitat for a host of wildlife species, while also offering storm surge protection, improving water quality, supporting nurseries for commercially important fish and shellfish, and providing recreation opportunities for coastal communities. Yet in the last century, coastal ecosystems in the eastern U.S...
Authors
Mitchell J. Eaton, Jennifer K. Costanza, Fred A Johnson, Julien Martin, Laura Taylor

Harvest assessment for Taiga bean geese in the Central Management Unit: 2019 Harvest assessment for Taiga bean geese in the Central Management Unit: 2019

In 2016 the European Goose Management International Working Group (EGM IWG) began development of an Adaptive Harvest Management (AHM) program for Taiga Bean Geese. In 2017, the IWG adopted an Interim Harvest Strategy consisting of a constant harvest rate (on adults) of 3% for the Central Management Unit (MU) of Taiga Bean Geese. The interim strategy is intended to provide limited hunting
Authors
Fred Johnson, Henning Heldbjerg, Mikko Alhainen, Jesper Madsen

Interpreting flux-based sediment budgets in a habitat context: Linking precise temporal-resolution measurements of sediment flux to spatially robust characterization of channel change Interpreting flux-based sediment budgets in a habitat context: Linking precise temporal-resolution measurements of sediment flux to spatially robust characterization of channel change

Continuous measurements of sediment transport at reach-bracketing gaging stations allow for the construction of continuous mass-balance sediment budgets for the intervening reach. Although these budgets identify periods of sediment surplus (net deposition) or sediment deficit (net erosion), such analyses cannot identify the locations within the reach where channel change occurs. Because...
Authors
Christina Leonard, John C. Schmidt, David J. Topping, Ronald E. Griffiths

Consistency counts: Modeling the effects of a change in protocol on Breeding Bird Survey counts Consistency counts: Modeling the effects of a change in protocol on Breeding Bird Survey counts

Analysis of North American Breeding Bird Survey (BBS) data requires controls for factors that influence detectability of birds along survey routes. Identifying factors that influence the counting process and incorporating them into analyses is a primary means of limiting bias in estimates of population change. Twedt (2015) implemented an alternative counting protocol on operational and...
Authors
John R. Sauer, William A. Link, David Ziolkowski, Keith L. Pardieck, Daniel J. Twedt

Optimization of salt marsh management at the Chincoteague National Wildlife Refuge, Virginia, through use of structured decision making Optimization of salt marsh management at the Chincoteague National Wildlife Refuge, Virginia, through use of structured decision making

Structured decision making is a systematic, transparent process for improving the quality of complex decisions by identifying measurable management objectives and feasible management actions; predicting the potential consequences of management actions relative to the stated objectives; and selecting a course of action that maximizes the total benefit achieved and balances tradeoffs among
Authors
Hilary A. Neckles, James E. Lyons, Jessica L. Nagel, Susan C. Adamowicz, Toni Mikula, Kevin S. Holcomb

The presence of antibiotic resistance genes in coastal soil and sediment samples from the eastern seaboard of the USA The presence of antibiotic resistance genes in coastal soil and sediment samples from the eastern seaboard of the USA

Infections from antibiotic resistant microorganisms are considered to be one of the greatest global public health challenges that result in huge annual economic losses. While genes that impart resistance to antibiotics (AbR) existed long before the discovery and use of antibiotics, anthropogenic uses of antibiotics in agriculture, domesticated animals, and humans are known to influence...
Authors
Dale W. Griffin, William Benzel, Shawn C. Fisher, Michael J. Focazio, Luke R. Iwanowicz, Keith A. Loftin, Timothy J. Reilly, Daniel K. Jones

Effects of experimental removal of Barred Owls on population Demography of Northern Spotted Owls in Washington and Oregon—2018 Progress Report Effects of experimental removal of Barred Owls on population Demography of Northern Spotted Owls in Washington and Oregon—2018 Progress Report

Populations of Northern Spotted Owls (Strix occidentalis caurina; herineafter referred to as Spotted Owl) have declined throughout the subspecies’ geographic range. Evidence indicates that competition with invading Barred Owls (S. varia) has contributed significantly to those declines. A pilot study in California showed that removal of Barred Owls coupled with conservation of suitable...
Authors
J. David Wiens, Katie M. Dugger, Damon B. Lesmeister, Krista E. Dilione, David C. Simon

Spatial conservation planning under uncertainty: Adapting to climate change risks using modern portfolio theory Spatial conservation planning under uncertainty: Adapting to climate change risks using modern portfolio theory

Climate change and urban growth impact habitats, species, and ecosystem services. To buffer against global change, an established adaptation strategy is designing protected areas to increase representation and complementarity of biodiversity features. Uncertainty regarding the scale and magnitude of landscape change complicates reserve planning and exposes decision makers to risk of...
Authors
Mitchell J. Eaton, Simeon Yurek, Zulqarnain Haider, Julien Martin, Fred Johnson, Bradley Udell, Hadi Charkhgard, Changhyun Kwon

A novel host-adapted strain of Salmonella Typhimurium causes disease in olive ridley turtles (Lepidochelys olivacea) in the Pacific. A novel host-adapted strain of Salmonella Typhimurium causes disease in olive ridley turtles (Lepidochelys olivacea) in the Pacific.

Salmonella spp. are frequently shed by wildlife including turtles, but S. enterica subsp. enterica serovar Typhimurium or lesions associated with Salmonella are rare in turtles. Between 1996 and 2016, we necropsied 127 apparently healthy pelagic olive ridley turtles (Lepidochelys olivacea) that died from drowning bycatch in fisheries and 44 live or freshly dead stranded turtles from the...
Authors
Thierry M. Work, Julie Dagenais, Brian A. Stacy, Jason T. Ladner, Jeffrey M. Lorch, George H. Balazs, Elias Barquero-Calvo, Brenda M. Berlowski-Zier, Renee Breeden, Natalia Corrales-Gomez, Rocio Gonzalez-Barrientos, Heather Harris, Gabriela Hernandez-Mora, Angel Herrera-Ulloa, Shoreh Hesami, T. Todd Jones, Juan Alberto Morales, Terry M. Norton, Robert Rameyer, Daniel Taylor, Thomas B. Waltzek

Synopsis of research programs that can provide baseline and monitoring information for offshore energy activities in the Pacific region: Seabird and marine mammal surveys in the Pacific region Synopsis of research programs that can provide baseline and monitoring information for offshore energy activities in the Pacific region: Seabird and marine mammal surveys in the Pacific region

We assembled and tabulated information about marine bird and mammal research and monitoring programs that could provide data needed to support environmental risk assessments. This included identifying ongoing or completed research programs that contain information on species and habitats sensitive to offshore energy activities and that could provide baseline and monitoring data to...
Authors
Josh Adams, Kevin D. Lafferty, Emily C. Kelsey, Cora A. Johnston

Assessing the chemistry and bioavailability of dissolved organic matter from glaciers and rock glaciers Assessing the chemistry and bioavailability of dissolved organic matter from glaciers and rock glaciers

As glaciers thaw in response to warming, they release dissolved organic matter (DOM) to alpine lakes and streams. The United States contains an abundance of both alpine glaciers and rock glaciers. Differences in DOM composition and bioavailability between glacier types, like rock and ice glaciers, remain undefined. To assess differences in glacier and rock glacier DOM we evaluated...
Authors
Timothy S. Fegel, Claudia M. Boot, Corey D. Broeckling, Jill Baron, Edward K Hall

Trends and carrying capacity of sea otters in Southeast Alaska Trends and carrying capacity of sea otters in Southeast Alaska

Sea otter populations in Southeast Alaska (SEAK) have increased dramatically from fewer than 500 translocated animals in the late 1960s. The recovery of sea otters to ecosystems from which they had been absent has affected coastal food webs, including commercially important fisheries, and thus information on expected growth and equilibrium abundances can help inform resource management...
Authors
M. Tim Tinker, Verena A. Gill, George G. Esslinger, James L. Bodkin, Melissa Monk, Marc Mangel, Daniel Monson, Wendel W. Raymond, Michelle Kissling
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