This Endangered Species Day, we’re celebrating the USGS science that helps achieve sustainable management and conservation of some of the Nation’s most endangered flora and fauna.
Black-footed Ferrets
To increase populations of endangered black-footed ferrets and conserve the prairie dogs they rely on for survival, it is essential for land managers to control disease outbreaks. The USGS National Wildlife Health Center (NWHC) develops various disease management tools, including vaccines.
The SARS-CoV-2 virus, the cause of the COVID-19 pandemic, is known to infect and cause severe disease, such as respiratory distress and death, in mustelids, including farm-raised mink and domestic ferrets. This raised concern that the virus may also pose a threat to endangered black-footed ferrets managed in captivity for breeding and recovery purposes.
A preliminary vaccination trial against SARS-CoV-2 was completed in captive black-footed ferrets to assess safety, immunogenicity, and anti-viral efficacy. Scientists saw a significant rise in mean antibody titers against the virus, about 150-fold that of pre-vaccination titers.
Scientists with the NWHC and the University of Wisconsin - Madison developed a sylvatic plague vaccine to help control outbreaks of plague in prairie dog communities. Sylvatic plague can decimate prairie dog populations, which in turn affects the recovery of endangered black-footed ferrets that depend on prairie dogs for food. Protecting wildlife from plague and reducing spread of the disease can also help people and pets that are susceptible to infection.
Whitebark Pine
Whitebark pine is an ecologically and culturally important high-elevation conifer. It has been recognized as a foundation species in high-elevation montane ecosystems in the Pacific Northwest and Rocky Mountain due to its importance in promoting snowpack accumulation and retention, facilitating vegetative establishment, and providing a critical food source for a variety of wildlife.

However, there is great concern about the future viability of whitebark pine forests due to extensive tree mortality associated with a highly aggressive exotic pathogen, white pine blister rust, and extensive outbreaks of the native mountain pine beetle linked to a warming climate.
Managers tasked with supporting and maintaining the viability of whitebark pine into the future need information on how whitebark pine forests respond to climate and other disturbances throughout its geographic range.
Tree growth and resin-based defenses play a crucial role in defending whitebark pine against conifer bark beetle interactions. The relationship between resin ducts and climate in higher-elevation, energy-limited ecosystems is currently poorly understood.
USGS scientists evaluated the relationship between biological trends in tree growth, resin duct anatomy, and climatic variability to determine if tree growth and resin duct morphology of whitebark pine is constrained by climate and/or regional drought conditions.
Their results suggest that whitebark pine growth and defense was historically limited by short growing seasons in high-elevation environments; however, this relationship may change in the future with prolonged warming conditions.
Hawaiian Honeycreepers
The iconic forest birds of Hawai‘i are facing a conservation crisis. Across the Hawaiian Islands, native forest birds have been experiencing population declines that have accelerated in the last one to two decades.
While habitat loss, invasive species, and non-native predators have negatively affected forest bird species for hundreds of years, and continue to do so, introduced diseases, particularly avian malaria, are the greatest threat to forest birds today. Further, climate change has increased temperatures in the high-elevation forests, facilitating the spread of disease into areas that were once largely disease-free.
Rapid population declines have pushed four Hawaiian honeycreeper species to the brink of extinction: the endangered ‘akikiki and ‘akeke‘e on Kaua‘i Island, and kiwikiu and ‘ākohekohe on Maui Island.
To help evaluate alternative conservation strategies for minimizing the risk of extinction, the USGS gathered experts with broad experience in Hawai‘i forest birds and ecosystems, as well as the management approaches being considered, to assess the probability of success of alternative management actions. In addition to assessing this crisis from a biological perspective, we convened a group of Native Hawaiian participants that have a strong connection to the forest birds, forests, and the integration of their culture in natural and biocultural resource management. They gave voice to the significance of forest birds to Native Hawaiians and provide their perspectives on alternative management actions.
The expert evaluations were summarized in a report and provide a broad assessment of conservation strategies that could be undertaken to prevent the extinction of the four Hawaiian honeycreepers.
Colorado Pikeminnow
Native fish within the Upper Colorado River Basin, like the endangered Colorado Pikeminnow, encounter many threats, including invasive species, habitat degradation, and streamflow alterations.
Mercury and selenium contamination is known to be elevated in some fish species of the Upper Colorado River Basin. To understand the potential threats that these contaminants may have on the long-term viability of managed fish populations, USGS scientists compiled 50 years (1962–2011) of mercury and selenium tissue concentrations for native and nonnative fish collected during previous studies within the Upper Colorado River Basin.
Mercury and selenium concentrations varied by species and by location within the watershed. Concentrations of mercury and selenium were above health benchmarks in 13 and 48 percent of individual fish, respectively, and some species of management concern, such as the federally endangered Colorado pikeminnow and the candidate roundtail chub, accumulated mercury above health benchmarks. The Colorado pikeminnow and the razorback sucker had selenium concentrations that exceeded the selenium benchmarks.
The data and knowledge gaps identified in the study can be used to guide research and monitoring to address the effects of mercury and selenium on endangered species populations and recovery.
California Tiger Salamanders
Endangered California tiger salamanders must cross roads to reach essential breeding and foraging habitat and are slow moving or are too small for drivers to see and avoid. These behaviors put them at high risk of vehicle collisions
USGS researchers investigated how the salamanders interacted with different types of barrier fencing while migrating to their annual breeding site and whether they were able to find and use an under-road tunnel passage system.
They found that the probability of a salamander reaching a passageway decreased rapidly as distance from the tunnel increased. They estimate that with a maximum of 12.5 meters between passages, approximately 90% of adult salamanders are likely to encounter road crossings. The materials that the barrier fences were made of also made a difference: the salamanders moved more efficiently along solid fencing than along mesh fencing without a visual barrier.
These considerations can assist those seeking to design effective road mitigation for California tiger salamander and other migratory amphibians and reptiles.
The research was conducted in collaboration with Caltrans, the Western Transportation Institute, Herpetofauna Consultants International Ltd, Stanford University, the US Forest Service, and the California Department of Fish and Wildlife.
Development of SARS-CoV-2 vaccine to support black-footed ferret conservation
Assessment of Mercury and Selenium Accumulation in Upper Colorado River Basin Fish
Assessment of Mercury and Selenium Accumulation in Upper Colorado River Basin Fish
Assessment of Mercury and Selenium Accumulation in Upper Colorado River Basin Fish
Vaccines
Using Genetic Information to Understand Drought Tolerance and Bark Beetle Resistance in Whitebark Pine Forests
Science and Forecasting to Inform Implementation of the Greater Yellowstone Coordinating Committee’s Whitebark Pine Management Strategy
Quantifying the Effects of Climate Change on Mountain Pine Beetle Outbreaks and Subsequent Threats to Whitebark Pine
Increased whitebark pine (Pinus albicaulis) growth and defense under a warmer and regionally drier climate
Immunogenicity, safety, and anti-viral efficacy of a subunit SARS-CoV-2 vaccine candidate in captive black-footed ferrets (Mustela nigripes) and their susceptibility to viral challenge
Fipronil pellets reduce flea abundance on black-tailed prairie dogs: Potential tool for plague management and black-footed ferret conservation
- Overview
This Endangered Species Day, we’re celebrating the USGS science that helps achieve sustainable management and conservation of some of the Nation’s most endangered flora and fauna.
Black-footed ferret on the prowl. Black-footed Ferrets
To increase populations of endangered black-footed ferrets and conserve the prairie dogs they rely on for survival, it is essential for land managers to control disease outbreaks. The USGS National Wildlife Health Center (NWHC) develops various disease management tools, including vaccines.
The SARS-CoV-2 virus, the cause of the COVID-19 pandemic, is known to infect and cause severe disease, such as respiratory distress and death, in mustelids, including farm-raised mink and domestic ferrets. This raised concern that the virus may also pose a threat to endangered black-footed ferrets managed in captivity for breeding and recovery purposes.
A preliminary vaccination trial against SARS-CoV-2 was completed in captive black-footed ferrets to assess safety, immunogenicity, and anti-viral efficacy. Scientists saw a significant rise in mean antibody titers against the virus, about 150-fold that of pre-vaccination titers.
Scientists with the NWHC and the University of Wisconsin - Madison developed a sylvatic plague vaccine to help control outbreaks of plague in prairie dog communities. Sylvatic plague can decimate prairie dog populations, which in turn affects the recovery of endangered black-footed ferrets that depend on prairie dogs for food. Protecting wildlife from plague and reducing spread of the disease can also help people and pets that are susceptible to infection.
Whitebark Pine
Whitebark pine is an ecologically and culturally important high-elevation conifer. It has been recognized as a foundation species in high-elevation montane ecosystems in the Pacific Northwest and Rocky Mountain due to its importance in promoting snowpack accumulation and retention, facilitating vegetative establishment, and providing a critical food source for a variety of wildlife.
Sources/Usage: Some content may have restrictions. Visit Media to see details.A forest of whitebark pine trees. However, there is great concern about the future viability of whitebark pine forests due to extensive tree mortality associated with a highly aggressive exotic pathogen, white pine blister rust, and extensive outbreaks of the native mountain pine beetle linked to a warming climate.
Managers tasked with supporting and maintaining the viability of whitebark pine into the future need information on how whitebark pine forests respond to climate and other disturbances throughout its geographic range.
Tree growth and resin-based defenses play a crucial role in defending whitebark pine against conifer bark beetle interactions. The relationship between resin ducts and climate in higher-elevation, energy-limited ecosystems is currently poorly understood.
USGS scientists evaluated the relationship between biological trends in tree growth, resin duct anatomy, and climatic variability to determine if tree growth and resin duct morphology of whitebark pine is constrained by climate and/or regional drought conditions.
Their results suggest that whitebark pine growth and defense was historically limited by short growing seasons in high-elevation environments; however, this relationship may change in the future with prolonged warming conditions.
Hawaiian Honeycreepers
Many species of Hawaiian honeycreepers have persisted into the 20th century because high elevation rain forests on the islands of Kaua’i, Maui, and Hawai’i are cool enough to limit transmission of introduced avian malaria (Plasmodium relictum). Malaria transmission is tied closely to the effects of temperature on development of malarial parasites within their mosquito vectors and the effects of temperature and rainfall on seasonal and altitudinal changes in mosquito populations. As a result, this system may be very sensitive to recently documented increases in mean temperature in the Hawaiian Islands. The iconic forest birds of Hawai‘i are facing a conservation crisis. Across the Hawaiian Islands, native forest birds have been experiencing population declines that have accelerated in the last one to two decades.
While habitat loss, invasive species, and non-native predators have negatively affected forest bird species for hundreds of years, and continue to do so, introduced diseases, particularly avian malaria, are the greatest threat to forest birds today. Further, climate change has increased temperatures in the high-elevation forests, facilitating the spread of disease into areas that were once largely disease-free.
Rapid population declines have pushed four Hawaiian honeycreeper species to the brink of extinction: the endangered ‘akikiki and ‘akeke‘e on Kaua‘i Island, and kiwikiu and ‘ākohekohe on Maui Island.
To help evaluate alternative conservation strategies for minimizing the risk of extinction, the USGS gathered experts with broad experience in Hawai‘i forest birds and ecosystems, as well as the management approaches being considered, to assess the probability of success of alternative management actions. In addition to assessing this crisis from a biological perspective, we convened a group of Native Hawaiian participants that have a strong connection to the forest birds, forests, and the integration of their culture in natural and biocultural resource management. They gave voice to the significance of forest birds to Native Hawaiians and provide their perspectives on alternative management actions.
The expert evaluations were summarized in a report and provide a broad assessment of conservation strategies that could be undertaken to prevent the extinction of the four Hawaiian honeycreepers.
Colorado Pikeminnow
Native fish within the Upper Colorado River Basin, like the endangered Colorado Pikeminnow, encounter many threats, including invasive species, habitat degradation, and streamflow alterations.
U.S. Geological Survey scientists holding a Colorado pikeminnow during a sampling trip in the Upper Colorado River Basin. Mercury and selenium contamination is known to be elevated in some fish species of the Upper Colorado River Basin. To understand the potential threats that these contaminants may have on the long-term viability of managed fish populations, USGS scientists compiled 50 years (1962–2011) of mercury and selenium tissue concentrations for native and nonnative fish collected during previous studies within the Upper Colorado River Basin.
Mercury and selenium concentrations varied by species and by location within the watershed. Concentrations of mercury and selenium were above health benchmarks in 13 and 48 percent of individual fish, respectively, and some species of management concern, such as the federally endangered Colorado pikeminnow and the candidate roundtail chub, accumulated mercury above health benchmarks. The Colorado pikeminnow and the razorback sucker had selenium concentrations that exceeded the selenium benchmarks.
The data and knowledge gaps identified in the study can be used to guide research and monitoring to address the effects of mercury and selenium on endangered species populations and recovery.
California Tiger Salamanders
The California tiger salamander (Ambystoma californiense) is a dark brown salamander with yellow spots. Endangered California tiger salamanders must cross roads to reach essential breeding and foraging habitat and are slow moving or are too small for drivers to see and avoid. These behaviors put them at high risk of vehicle collisions
USGS researchers investigated how the salamanders interacted with different types of barrier fencing while migrating to their annual breeding site and whether they were able to find and use an under-road tunnel passage system.
They found that the probability of a salamander reaching a passageway decreased rapidly as distance from the tunnel increased. They estimate that with a maximum of 12.5 meters between passages, approximately 90% of adult salamanders are likely to encounter road crossings. The materials that the barrier fences were made of also made a difference: the salamanders moved more efficiently along solid fencing than along mesh fencing without a visual barrier.
These considerations can assist those seeking to design effective road mitigation for California tiger salamander and other migratory amphibians and reptiles.
The research was conducted in collaboration with Caltrans, the Western Transportation Institute, Herpetofauna Consultants International Ltd, Stanford University, the US Forest Service, and the California Department of Fish and Wildlife.
- Science
Development of SARS-CoV-2 vaccine to support black-footed ferret conservation
The SARS-CoV-2 virus is known to infect and cause severe disease, such as respiratory distress and death, in mustelids, including farm-raised mink (Mustela lutreola and Neovison vison) and domestic ferrets (M. putorius). This raised concern that the virus may also pose a threat to endangered black-footed ferrets (Mustela nigripes) managed in captivity for breeding and recovery purposes.Assessment of Mercury and Selenium Accumulation in Upper Colorado River Basin Fish
More than 50 years of existing mercury and selenium concentrations in native and nonnative fish species residing in streams within the Upper Colorado River Basin were compiled and analyzed to provide an understanding of concentrations among different species, sampling years, and locations to determine potential health risks. Concentrations of mercury and selenium were above health benchmarks in 13...Assessment of Mercury and Selenium Accumulation in Upper Colorado River Basin Fish
More than 50 years of existing mercury and selenium concentrations in native and nonnative fish species residing in streams within the Upper Colorado River Basin were compiled and analyzed to provide an understanding of concentrations among different species, sampling years, and locations to determine potential health risks. Concentrations of mercury and selenium were above health benchmarks in 13...Assessment of Mercury and Selenium Accumulation in Upper Colorado River Basin Fish
More than 50 years of existing mercury and selenium concentrations in native and nonnative fish species residing in streams within the Upper Colorado River Basin were compiled and analyzed to provide an understanding of concentrations among different species, sampling years, and locations to determine potential health risks. Concentrations of mercury and selenium were above health benchmarks in 13...Vaccines
The USGS National Wildlife Health Center (NWHC) works on developing various disease management tools, including the development of vaccines. Our current work focuses on vaccines for sylvatic plague, white-nose syndrome, and rabies as disease control strategies.Using Genetic Information to Understand Drought Tolerance and Bark Beetle Resistance in Whitebark Pine Forests
Forests are of tremendous ecological and economic importance. They provide natural places for recreation, clean drinking water, and important habitats for fish and wildlife. However, the warmer temperatures and harsher droughts in the west that are related to climate change are causing die-offs of many trees. Outbreaks of insects, like the mountain pine beetle, that kill trees are also more likelyScience and Forecasting to Inform Implementation of the Greater Yellowstone Coordinating Committee’s Whitebark Pine Management Strategy
The goal of this project was to inform implementation of the Greater Yellowstone Coordinating Committee (GYCC) Whitebark Pine (WBP) subcommittee’s “WBP Strategy” based on climate science and ecological forecasting. Project objectives were to: 1. Forecast ecosystem processes and WBP habitat suitability across the Greater Yellowstone Area (GYA) under alternative IPCC future scenarios; 2. Improve und...Quantifying the Effects of Climate Change on Mountain Pine Beetle Outbreaks and Subsequent Threats to Whitebark Pine
Whitebark pine is a high-elevation, important tree species that provides critical habitat for wildlife and supplies valued ecosystem services. These trees currently face multiple threats, including attack by the mountain pine beetle, which has recently killed whitebark pines over much of the western U.S. Climate is an important factor in these outbreaks, and future warming is expected to affect ep - Publications
Increased whitebark pine (Pinus albicaulis) growth and defense under a warmer and regionally drier climate
Introduction: Tree defense characteristics play a crucial role in modulating conifer bark beetle interactions, and there is a growing body of literature investigating factors mediating tree growth and resin-based defenses in conifers. A subset of studies have looked at relationships between tree growth, resin duct morphology and climate; however, these studies are almost exclusively from lower-eleAuthorsNicholas E. Kichas, Gregory T. Pederson, Sharon M. Hood, Richard G. Everett, David B. McWethyImmunogenicity, safety, and anti-viral efficacy of a subunit SARS-CoV-2 vaccine candidate in captive black-footed ferrets (Mustela nigripes) and their susceptibility to viral challenge
A preliminary vaccination trial against the emergent pathogen, SARS-CoV-2, was completed in captive black-footed ferrets (Mustela nigripes; BFF) to assess safety, immunogenicity, and anti-viral efficacy. Vaccination and boosting of 15 BFF with purified SARS-CoV-2 S1 subunit protein produced a nearly 150-fold increase in mean antibody titers compared to pre-vaccination titers. Serum antibody responAuthorsAriel Elizabeth Leon, Della Garelle, Airn Hartwig, Elizabeth Falendysz, Hon S. Ip, Julia S. Lankton, Tyler Tretten, Terry Spraker, Richard Bowen, Tonie E. RockeFipronil pellets reduce flea abundance on black-tailed prairie dogs: Potential tool for plague management and black-footed ferret conservation
In western North America, sylvatic plague (a flea-borne disease) poses a significant risk to endangered black-footed ferrets (Mustela nigripes) and their primary prey, prairie dogs (Cynomys spp.). Pulicides (flea-killing agents) can be used to suppress fleas and thereby manage plague. In South Dakota, US, we tested edible “FipBit” pellets, each containing 0.84 mg fipronil, on free-living black-taiAuthorsDavid A. Eads, Travis M. Livieri, Phillip Dobesh, Eddie Childers, Lauren Noble, Michele Vasquez, Dean E. Biggins - News