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Browse more than 65,000 articles authored by our scientists over the past 100+ year history of the USGS and refine search by topic, location, year, and advanced search.

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Comparison of magnetic bead and rapid swab RNA extraction methods for detecting rabbit hemorrhagic disease virus 2 in rabbit liver samples Comparison of magnetic bead and rapid swab RNA extraction methods for detecting rabbit hemorrhagic disease virus 2 in rabbit liver samples

We compared a bead RNA extraction method with a one-tube method that required only a heat block and ice. RNA was first extracted from liver samples from nine rabbits dying from rabbit hemorrhagic disease virus 2 (RHDV2) using magnetic beads, and RT-PCR was used to detect RHDV2 sequence. Following freezing, RNA was extracted a second time using the SwiftX™ Swabs Viral RNA Extraction...
Authors
Erik K. Hofmeister, Kathryn M. Griffin, Hon S. Ip

Genetic mark–recapture analysis reveals large annual variation in pre-breeding sex ratio of greater sage-grouse Genetic mark–recapture analysis reveals large annual variation in pre-breeding sex ratio of greater sage-grouse

Sex ratio, and the extent to which it varies over time, is an important factor in the demography, management, and conservation of wildlife populations. Greater sage-grouse Centrocercus urophasianus populations in western North America are monitored using counts of males at leks in spring. Population estimates derived from lek-count data typically assume a constant, female-biased sex...
Authors
Jessica E. Shyvers, Brett L Walker, Sara J. Oyler-McCance, Jennifer A. Fike, Barry R. Noon

Linking vocal behaviours to habitat structure to create behavioural landscapes Linking vocal behaviours to habitat structure to create behavioural landscapes

The recent development of animal-borne sensors coupled with location data can provide insights into how individuals modify their behaviour with respect to specific habitat features. Animals can express a diverse array of behaviours as they navigate heterogenous landscapes, yet few studies have specifically evaluated the interaction of behaviours with habitat characteristics. We used a...
Authors
Erin C Netoskie, Kristina L. Paxton, Eben H. Paxton, Gregory P. Asner, Patrick J. Hart

Spawning locations, movements, and potential for stock mixing of walleye in Green Bay, Lake Michigan Spawning locations, movements, and potential for stock mixing of walleye in Green Bay, Lake Michigan

Effective fishery management in large systems relies on understanding how individual stocks contribute to a fishery over spatial and temporal scales. The current conceptual model for management of Walleye Sander vitreus in Green Bay designates Walleye in the northern and southern parts of the bay as distinct stocks, with little mixing between the northern and southern fisheries, and...
Authors
Lisa K. Izzo, Daniel Dembkowski, Todd Hayden, Tom Binder, Christopher Vandergoot, Steven Hogler, Michael Donofrio, Troy Zorn, Charles Krueger, Daniel A. Isermann

Diverse migratory portfolios drive inter-annual switching behavior of elk across the Greater Yellowstone Ecosystem Diverse migratory portfolios drive inter-annual switching behavior of elk across the Greater Yellowstone Ecosystem

A growing body of evidence shows that some ungulates alternate between migratory and nonmigratory behaviors over time. Yet it remains unclear whether such short-term behavioral changes can help explain reported declines in ungulate migration worldwide, as opposed to long-term demographic changes. Furthermore, advances in tracking technology reveal that a simple distinction between...
Authors
Gabriel R. Zuckerman, Kristin J. Barker, Laura C. Gigliotti, Eric K. Cole, Justin A. Gude, Mark A. Hurley, Matthew J. Kauffman, Daryl Lutz, Daniel R. MacNulty, Eric J. Maichak, Doug McWhirter, Tony W. Mong, Kelly Proffitt, Brandon M. Scurlock, Daniel R. Stahler, Ben Wise, Arthur D. Middleton

The Toolbox for River Velocimetry using Images from Aircraft (TRiVIA) The Toolbox for River Velocimetry using Images from Aircraft (TRiVIA)

Accurate knowledge of the speed at which water moves along a river is essential for understanding ecohydraulic processes and managing natural resources. Measuring flow velocity via remote sensing can be more efficient than conventional field methods, and powerful computational techniques for inferring velocity fields from videos or image time series have been developed. The development...
Authors
Carl J. Legleiter, Paul J. Kinzel

Seasonal shifts in diel vertical migrations by lake-dwelling coastal cutthroat trout, Oncorhynchus clarkii clarkii, reflect thermal regimes and prey distributions Seasonal shifts in diel vertical migrations by lake-dwelling coastal cutthroat trout, Oncorhynchus clarkii clarkii, reflect thermal regimes and prey distributions

Lakes provide important habitat for salmonids that may use them as a primary feeding area between periods of reproduction. The seasonal changes in vertical thermal structure in lakes can affect the distribution of salmonids on seasonal and diel time scales as they search for, consume, and digest prey that also exploits the water column's distribution of food, temperature and light. Our...
Authors
Zachary R. Thomas, David Beauchamp, Casey P. Clark, Thomas P. Quinn

Volcanic earthquake catalog enhancement using integrated detection, matched-filtering, and relocation tools Volcanic earthquake catalog enhancement using integrated detection, matched-filtering, and relocation tools

Volcanic earthquake catalogs are an essential data product used to interpret subsurface volcanic activity and forecast eruptions. Advances in detection techniques (e.g., matched-filtering, machine learning) and relative relocation tools have improved catalog completeness and refined event locations. However, most volcano observatories have yet to incorporate these techniques into their...
Authors
Darren Tan, David Fee, Alicia J. Hotovec-Ellis, J.D. Pesicek, Matthew M. Haney, John Power, T. Girona

Linked foraging and bioenergetics modeling may inform fish parasite infection dynamics Linked foraging and bioenergetics modeling may inform fish parasite infection dynamics

The parasitic copepod Salmincola californiensis infects Pacific salmon and trout (Oncorhynchus spp.) and often reaches high prevalence and intensity in reservoirs compared to stream systems. Recent research indicates that temperature plays a fundamental role in copepod development and fish susceptibility. Here, we expand a linked foraging and bioenergetics model to simulate infection...
Authors
Christina Amy Murphy, Amanda Pollock, Sherri L Johnson, Ivan Arismendi

Body size predicts the rate of contemporary morphological change in birds Body size predicts the rate of contemporary morphological change in birds

Across the globe, bird morphology is changing rapidly. Although trajectories of change are frequently consistent across studies, rates of change among species vary in magnitude—a phenomenon that remains unexplained. By analyzing two independently collected datasets demonstrating consistent changes in morphology in 129 species, we show that rates of phenotypic change are negatively...
Authors
Marketa Zimova, Brian Weeks, David E. Willard, Sean T Giery, Vitek Jirinec, Ryan C. Burner, Benjamin M Winger

The weight of New York City: Possible contributions to subsidence from anthropogenic sources The weight of New York City: Possible contributions to subsidence from anthropogenic sources

New York City faces accelerating inundation risk from sea level rise, subsidence, and increasing storm intensity from natural and anthropogenic causes. Here we calculate a previously unquantified contribution to subsidence from the cumulative mass and downward pressure exerted by the built environment of the city. We enforce that load distribution in a multiphysics finite element model...
Authors
Thomas E. Parsons, Pei-Chin Wu, Meng Wei, Steven D’Hondt
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