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Browse more than 65,000 articles authored by our scientists over the past 100+ year history of the USGS and refine search by topic, location, year, and advanced search.

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Cumulative effects of piscivorous colonial waterbirds on juvenile salmonids: A multi predator-prey species evaluation Cumulative effects of piscivorous colonial waterbirds on juvenile salmonids: A multi predator-prey species evaluation

We investigated the cumulative effects of predation by piscivorous colonial waterbirds on the survival of multiple salmonid (Oncorhynchus spp.) populations listed under the U.S. Endangered Species Act (ESA) and determined what proportion of all sources of fish mortality (1 –survival) were due to birds in the Columbia River basin, USA. Anadromous juvenile salmonids (smolts) were exposed...
Authors
Allen F. Evans, Quinn Payton, Nathan J. Hostetter, Ken Collis, Bradley M. Cramer, Daniel D. Roby

Testing assumptions in the use of PIT tags to study movement of Plethodon salamanders Testing assumptions in the use of PIT tags to study movement of Plethodon salamanders

Studying the movements of organisms that live underground for at least a portion of their life history is challenging, given the state of current technology. Passive integrated transponders (PIT tags) provide a way to individually identify and, more recently, study the movement of smaller animals, including those that make subterranean movements. However, there are widespread assumptions...
Authors
Sean C Sterrett, Todd L. Dubreuil, Matthew J. O'Donnell, Adrianne Brand, Evan H. Campbell Grant

Discovery and potential ramifications of reduced iron-bearing nanoparticles — Magnetite, wüstite, and zero-valent iron — In wildland–urban interface fire ashes Discovery and potential ramifications of reduced iron-bearing nanoparticles — Magnetite, wüstite, and zero-valent iron — In wildland–urban interface fire ashes

The increase in fires at the wildland–urban interface has raised concerns about the potential environmental impact of ash remaining after burning. Here, we examined the concentrations and speciation of iron-bearing nanoparticles in wildland–urban interface ash. Total iron concentrations in ash varied between 4 and 66 mg g−1. Synchrotron X-ray absorption near-edge structure (XANES)...
Authors
Mohammed Baalousha, Morgane Desmau, Sheryl A. Singerling, Jackson P. Webster, Sandrine J. Matiasek, Michelle A. Stern, Charles N. Alpers

Millennia-old coral holobiont DNA provides insight into future adaptive trajectories Millennia-old coral holobiont DNA provides insight into future adaptive trajectories

Ancient DNA (aDNA) has been applied to evolutionary questions across a wide variety of taxa. Here, for the first time, we leverage aDNA from millennia-old fossil coral fragments to gain new insights into a rapidly declining western Atlantic reef ecosystem. We sampled four Acropora palmata fragments (dated 4215 BCE - 1099 CE) obtained from two Florida Keys reef cores. From these samples...
Authors
Carly B. Scott, Anny Cardenas, Matthew Mah, Vagheesh Narasimhan, Nadin Rohland, Lauren T. Toth, Christian Voostra, David Reich, Mikhail V Matz

Optimizing survey design for shasta salamanders (Hydromantes spp.) to estimate occurrence in little-studied portions of their range Optimizing survey design for shasta salamanders (Hydromantes spp.) to estimate occurrence in little-studied portions of their range

Shasta salamanders (collectively, Hydromantes samweli, H. shastae, and H. wintu; hereafter, Shasta salamander) are endemic to northern California in the general vicinity of Shasta Lake reservoir. Although generally associated with limestone, they have repeatedly been found in association with other habitats, calling into question the distribution of the species complex. Further limiting...
Authors
Brian J. Halstead, Patrick M. Kleeman, Graziella Vittoria DiRenzo, Jonathan P. Rose

Projecting flood frequency curves under near-term climate change Projecting flood frequency curves under near-term climate change

Flood-frequency curves, critical for water infrastructure design, are typically developed based on a stationary climate assumption. However, climate changes are expected to violate this assumption. Here, we propose a new, climate-informed methodology for estimating flood-frequency curves under non-stationary future climate conditions. The methodology develops an asynchronous...
Authors
Chandramauli Awasthi, Stacey A. Archfield, Karen R. Ryberg, Julie E. Kiang, A. Sankarasubramanian

Egg hatchability and egg thiamine concentrations in Lake Trout from the Northern Refuge of Lake Michigan Egg hatchability and egg thiamine concentrations in Lake Trout from the Northern Refuge of Lake Michigan

The Northern Refuge of Lake Michigan was established in 1985 under the auspices of the Great Lakes Fishery Commission as part of an intensely managed effort to restore a self‐sustaining Lake Trout Salvelinus namaycush population to the lake. Despite the stocking of millions of Lake Trout into the refuge and survival of these stocked fish to adulthood, signs of natural recruitment by Lake...
Authors
Charles P. Madenjian, Kevin M. Keeler, Lyle T. Grivicich, Paul E. Haver, Roger R. Gordon, Donald E. Tillitt, Jacques Rinchard

An initial assessment of plankton tow detection probabilities for dreissenid mussels in the western United States An initial assessment of plankton tow detection probabilities for dreissenid mussels in the western United States

Early detection of dreissenid mussels (Dreissena polymorpha and D. rostriformis bugensis) is crucial to mitigating the economic and environmental impacts of an infestation. Plankton tow sampling is a common method used for early detection of dreissenid mussels, but little is known about the sampling intensity required for a high probability of early detection using the method. We used...
Authors
Meaghan Winder, Adam Sepulveda, Andrew Hoegh

Divergent gene expression profiles in Alaskan sea otters: An indicator of chronic domoic acid exposure? Divergent gene expression profiles in Alaskan sea otters: An indicator of chronic domoic acid exposure?

An opportunistic investigation into ecosystem instability in Kachemak Bay (KBay), Alaska, has led us to investigate exposure to toxic algae in sea otters. We used gene expression to explore the physiological health of sea otters sampled in KBay in May 2019. We found altered levels of gene transcripts in comparison with reference sea otters from clinically normal, oil-exposed, and...
Authors
Lizabeth Bowen, Susan Knowles, Kathi Lefebvre, Michelle St Martin, Michael Murray, Kimberly A. Kloecker, Daniel Monson, Ben Weitzman, Brenda Ballachey, Heather Coletti, Shannon C. Waters-Dynes, C Cummings

Reference genome of the California glossy snake, Arizona elegans occidentalis: A declining California Species of Special Concern Reference genome of the California glossy snake, Arizona elegans occidentalis: A declining California Species of Special Concern

The glossy snake (Arizona elegans) is a polytypic species broadly distributed across southwestern North America. The species occupies habitats ranging from California’s coastal chaparral to the shortgrass prairies of Texas and southeastern Nebraska, to the extensive arid scrublands of central México. Three subspecies are currently recognized in California, one of which is afforded state...
Authors
Dustin A. Wood, Jonathan Q. Richmond, Merly Escalona, Mohan P. A. Marimuthu, Oanh Nguyen, Samuel Sacco, Eric Beraut, Michael F. Westphal, Robert N. Fisher, Amy G. Vandergast, Erin Toffelmier, Ian J Wang, H. Bradley Shaffer

RNA-seq reveals potential gene biomarkers in fathead minnows (Pimephales promelas) for exposure to treated wastewater effluent RNA-seq reveals potential gene biomarkers in fathead minnows (Pimephales promelas) for exposure to treated wastewater effluent

Discharged wastewater treatment plant (WWTP) effluent greatly contributes to the generation of complex mixtures of contaminants of emerging concern (CECs) in aquatic environments which often contain neuropharmaceuticals and other emerging contaminants that may impact neurological function. However, there is a paucity of knowledge on the neurological impacts of these exposures to aquatic...
Authors
Peter Schumann, E. Meade, H. Zhi, G. H. LeFevre, Dana W. Kolpin, Shannon M. Meppelink, Luke R. Iwanowicz, Rachael F. Lane, A. Schmoldt, O. Mueller, R. D. Klaper
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