Software

Elevation-change datasets can also be used to identify stable and unstable areas of the seafloor. The Multi-grid Analysis of Point Stability (MAPS) program was created to automate this process. This program is used to locate persistent areas of user-defined seafloor stability and/or instability at common geographic locations from multiple elevation-change datasets (grids) representing...

MetaIPM is a Python package (Python Software Foundation 2020) that models meta-population dynamics and continuous growth rates via an integral projection model (IPM) for species living in distinct habitat patches. The package stems from a model that compares invasive carp population control strategies. The package supports differing sex and any organisms living in distinct habitat...

gfail_lifelines is a package for estimating lifeline impacts caused by earthquake-triggered ground failure. It currently contains one module, gfroads, that combines the USGS earthquake-triggered landslide model (the Nowicki Jessee et al. 2017 model) estimates of areal coverage with Open Street Map roads to estimate the probability of a given road segment being affected.

The Stochastic Empirical Loading and Dilution Model (SELDM) was developed by the U.S. Geological Survey (USGS), in cooperation with the Federal Highway Administration (FHWA) Office of Project Delivery and Environmental Review to transform complex scientific data into meaningful information about the risk of adverse effects of runoff on receiving waters, the potential need for mitigation...

The North American Bat Monitoring Program: R Data Connection Package can be used to extract and upload data to the NABat Monitoring Program through the GQL API. This software is written as a wrapper around the NABat GQL API. Documentation for the database and API can be found at https://sciencebase.usgs.gov/. This code includes the ability to reformat NABat data, upload NABat data...

This package is designed to estimate, summarize, and visualize wildlife aggregation metrics using location information like GPS collar data. The motivation for the development of this package began with two research efforts studying the aggregation and density of elk on the National Elk Refuge, Wyoming (Janousek et al.2021; and Graves et al. 2021). The primary goal of the WildAgg package...

The Risk of Contact Tool (RoCT) is an R-based implementation of the Risk of Contact model described in O'Brien et al. (2014). It uses a variety of spatial inputs (including telemetry point data, a core herd home range (CHHR) polygon, a habitat raster model, and a set of active domestic sheep allotments) together with estimates of bighorn sheep foray behavior to estimate the probability...

MapMark4 Shiny is a self-contained R Shiny app designed for quantitative mineral resource assessments. The MapMark4 Shiny app is an implementation of the MapMark4 R package.

The USGS assessment and methodology reports cited within this software release require extensive processing using computational methods and modeling. The most demanding aspects of the modeling were performed using publicly available software: SGeMS and GSLIB (See the 'related External Resources' section on this webpage to learn more about this software). This publication releases the...

The USGS assessment and methodology reports cited within this software release require extensive processing using computational methods and modeling. The most demanding aspects of the modeling were performed using publicly available software: SGeMS and GSLIB.

The iBluff package in the R language provides an environment to conduct morphological analysis of coastal bluffs / cliffs and offers an automatic and reproducible alternative of identifying top and toe instead of hand digitizing. This package extracts elevation profiles along automatically identified pseudo-perpendicular transects on the bluff face, bluff/cliff top, toe, secondary...

Aquaculture and Irrigation Water-Use Model (AIWUM) version 1 with demonstration for the Mississippi Alluvial Plain.