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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 5011

Prion gene sequencing in Florida panthers (Puma concolor coryi) suggests no differential susceptibility to transmissible spongiform encephalopathy Prion gene sequencing in Florida panthers (Puma concolor coryi) suggests no differential susceptibility to transmissible spongiform encephalopathy

Transmissible spongiform encephalopathy, or prion disease, poses a serious threat to wildlife; however, the susceptibility of apex predators is still being assessed. We investigated variation in the prion protein gene in Florida panthers (Puma concolor coryi) and found that admixture from Central American pumas probably introduced a novel, albeit benign, prion allele.
Authors
Elizabeth Sharkey, David P. Onorato, Melody E. Roelke-Parker, Alexander Ochoa, Melanie Culver, Robert R. Fitak

Reproductive contribution of lake sturgeon transferred upstream of dams on a Great Lakes tributary Reproductive contribution of lake sturgeon transferred upstream of dams on a Great Lakes tributary

Dam construction contributes to declines in the distribution and abundance of many fishes. Increasing connectivity through adult transfer can be demographically and genetically beneficial, but assessing the effects resulting from transfer can be difficult if resident fish exist upstream. Genotypes of adult and larval lake sturgeon (Acipenser fulvescens) were used to quantify...
Authors
Patrick S. Forsythe, Nicholas M. Sard, Stefan Tucker, Lexi Atler, Jeannette Kanefsky, Jennifer Johnson, Daniel A. Isermann, Robert F. Elliott, Michael Donofrio, Kim T. Scribner

Infection by the marine cestode Hepatoxylon trichiuri in returning Chinook salmon (Oncorhynchus tshawytscha) spawners in Patagonia: Implications for a novel fishery Infection by the marine cestode Hepatoxylon trichiuri in returning Chinook salmon (Oncorhynchus tshawytscha) spawners in Patagonia: Implications for a novel fishery

Parasitological information may be useful for managing economically important fisheries by providing insights into population dynamics and health effects. The Chinook salmon (Oncorhynchus tshawytscha), an invasive species with high socio-ecological importance in South America, supports recreational and incipient artisanal fisheries. In Southern Chile, the recent approval of coastal...
Authors
Guillermo Figueroa-Munoz, Patricio Torres, J. Marcos Rodriguez, Christina Amy Murphy

Integrated analysis of marked and count data to characterizefine-scale stream fish movement Integrated analysis of marked and count data to characterizefine-scale stream fish movement

Immigration and emigration are key demographic processes of animal population dynamics. However, 3 we have limited knowledge on how fine-scale movement varies over space and time. We developed a 4 Bayesian integrated population model using individual mark-recapture and count data to characterize 5 fine-scale movement of stream fish at 20-m resolution every two months for 28 months. Our...
Authors
Yoichiro Kanno, Kasey Celene Pregler, Seoghyun Kim

Linking suspended sediment conditions to hyporheic dissolved oxygen and fine sediment deposition in salmonid spawning habitat below an irrigation dam, Park County, Wyoming Linking suspended sediment conditions to hyporheic dissolved oxygen and fine sediment deposition in salmonid spawning habitat below an irrigation dam, Park County, Wyoming

Dams are essential for water resources management but impose notable effects on fluvial sediment transport and downstream river morphology by reducing or altering the timing of sediment loads. We explored the relationship between dam sediment management and downstream sediment dynamics in the context of riverine fisheries management. We quantified the effects of dam sediment management...
Authors
Ashleigh M. Pilkerton, Jason S. Alexander, Lindsay Patterson, Jason C. Burckhardt, Frank J. Rahel, Annika W. Walters

Flying fish habitat and co-occurrence with seabirds in the northern Gulf of Mexico Flying fish habitat and co-occurrence with seabirds in the northern Gulf of Mexico

Flying fish (family Exocoetidae) play an important role in marine food webs, linking sub-surface and aerial predators. The association of seabirds with sub-surface predators in subtropical and tropical regions through facilitated foraging events is a well-known phenomenon and is sometimes used to identify fishing grounds for flying fish, flying fish roe, and tunas. In the northern Gulf...
Authors
Pamela E. Michael, J. Christopher Haney, Jeffrey S. Gleason, Kathy M. Hixson, Yvan G. Satgé, Patrick G.R. Jodice

Multiple dimensions define thresholds for population resilience of the eastern oyster, Crassostrea virginica Multiple dimensions define thresholds for population resilience of the eastern oyster, Crassostrea virginica

A species' distribution depends on its tolerance to environmental conditions. These conditions are defined by a minimum, maximum, and optimal ranges of single and combined factors. Forays into environmental conditions outside the minimum or maximum tolerance of a species (i.e., thresholds) are predicted to have large effects on a species' population and may help predict population...
Authors
Megan K. La Peyre, H. Wang, Shaye E. Sable, Wei Wu, Bin Li, Devin Comba, Carlos Perez, Melanie Bates, Lauren M. Swam

Fatal interactions: Pneumonia in bighorn lambs following experimental exposure to carriers of Mycoplasma ovipneumoniae Fatal interactions: Pneumonia in bighorn lambs following experimental exposure to carriers of Mycoplasma ovipneumoniae

We hypothesized that bighorn sheep ewes with chronic nasal Mycoplasma ovipneumoniae carriage are the source of infection that results in fatal lamb pneumonia. We tested this hypothesis in captive bighorn ewes at two study facilities over a 5-year period, by identifying carrier ewes and then comparing lamb fates in groups that did (exposed pens) or did not (non-exposed pens) include one...
Authors
Logan K. Weyand, Brandi L. Felts, E. Frances Cassirer, Jonathan A. Jenks, Daniel P. Walsh, Thomas E. Besser

Variation in habitat selection by male Strix nebulosa (Great Gray Owls) across the diel cycle Variation in habitat selection by male Strix nebulosa (Great Gray Owls) across the diel cycle

Despite the long-standing recognition that animals partition activities, for example, across different periods of the day, understanding of how habitat selection varies according to specific temporal periods or behavioral activities remains limited for most species. For example, although much of the animal kingdom is nocturnally active, studies that characterize nocturnal behavior remain
Authors
Katherine B. Gura, Bryan Bedrosian, Susan Patla, Anna D. Chalfoun

Optimization of wetland environmental DNA metabarcoding protocols for Great Lakes region herpetofauna Optimization of wetland environmental DNA metabarcoding protocols for Great Lakes region herpetofauna

Many species of reptiles and amphibians (herpetofauna) rely on wetlands that are being degraded and lost at a high rate. Characterization of herpetofauna diversity in different wetland types may help guide conservation strategies. However, traditional survey methods often involve sampling within small temporal windows, and the gear deployed may be taxonomically biased, thus, they may...
Authors
Olivia M. Ruppert, Jared Joseph Homola, Jeannette Kanefsky, Alyssa Swinehart, Kim T. Scribner, John D. Robinson

Disease, environment, and pollution: Understanding drivers behind tumour outbreaks in sea turtles Disease, environment, and pollution: Understanding drivers behind tumour outbreaks in sea turtles

Various wildlife diseases of the Anthropocene (the Anthropocene currently has no formal status in the Divisions of Geologic Time https://pubs.usgs.gov/fs/2018/3054/fs20183054.pdf, accessed 4 June 2024) have root causes that are found in human-driven environmental disturbances. Fibropapillomatosis of sea turtles is exemplary of a human-exacerbated wildlife disease, and this case study...
Authors
Costanza Manes, Richard M. Herren, Evan Cooper, Margaret Lilyestrom, David Godfrey, Marianne Kuzoch, Raymond R. Carthy, Ilaria Capua

The Center for the Advancement of Population Assessment Methodology (CAPAM): A perspective on the first 10 years The Center for the Advancement of Population Assessment Methodology (CAPAM): A perspective on the first 10 years

The Center for the Advancement of Population Assessment Methodology (CAPAM) was established in 2013, envisioned as an institute that could conduct, organize, and communicate stock assessment research with the aim of benefiting fisheries assessment efforts internationally. CAPAM’s activities have focused on its workshop series and consequent special issues in Fisheries Research. The...
Authors
Mark N. Maunder, Paul R. Crone, Brice X. Semmens, Juan L. Valero, Lynn Waterhouse, Richard D. Methot, Andre E. Punt
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