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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. 

 

**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 5293

Passive acoustic monitoring is a cost-effective approach to conduct inland surveys for marbled murrelets Passive acoustic monitoring is a cost-effective approach to conduct inland surveys for marbled murrelets

The marbled murrelet (Brachyramphus marmoratus) is a seabird of conservation concern that nests in late-successional, old-growth forests in Oregon, Washington, and California, USA. Traditional audio-visual surveys have been the standard method for detecting murrelets in forests. Given that murrelets can be extremely cryptic in forest environments, audio-visual surveys are difficult, time...
Authors
Alaina D. Thomas, Adam Duarte, Matt J. Gostin, James T. Peterson, Damon B. Lesmeister

Diversity of polyomaviruses and papillomaviruses in penguins from eastern and western Antarctica Diversity of polyomaviruses and papillomaviruses in penguins from eastern and western Antarctica

Polyomaviruses and papillomaviruses are icosahedral viruses with small circular dsDNA genomes. Limited information on their diversity and evolution in avian hosts is available, with even less known regarding Antarctic penguins. Prior to this study, only one polyomavirus and two papillomaviruses had been identified in Adélie penguins (Pygoscelis adeliae). To expand our knowledge of these...
Authors
Melanie Regney, Virginia Morandini, Annie E. Schmidt, Josabel Belliure, Amélie Lescroël, Megan Elrod, Amy Li, Aidan Cox, Danny Khor, Dennis Jongsomjit, Jean Pennycook, Christina Burnham, Nadia Swanson, Suzanne Winquist, Katie M. Dugger, David G. Ainley, Grant Ballard, Simona Kraberger, Arvind Varsani

Observations of tear-drinking by lepidopterans on moose (Alces alces americana) in northeastern North America Observations of tear-drinking by lepidopterans on moose (Alces alces americana) in northeastern North America

Lepidoptera have long been known to feed on the tears of vertebrates as a presumed source of minerals or nutrients. While this unusual behavior has been observed in a variety of species, only a single previous record has been documented outside of the tropics. Here, we present the first documentation of moths visiting the eyes of a bull moose (Alces americanus americanus), captured via...
Authors
Laurence A. Clarfeld, Katherina D. Gieder, Therese M. Donovan

Revised length categories and standard weight equation for Northern Pikeminnow Revised length categories and standard weight equation for Northern Pikeminnow

Objective Length and weight indices (e.g., proportional size distribution, relative weight) provide standardized benchmarks that are useful for comparing groups of fish, identifying ecological interactions, and evaluating the effect of management actions. However, the current length categories and standard weight (Ws) equation for Northern Pikeminnow Ptychocheilus oregonensis, a species...
Authors
Nicholas S. Voss, Michael C. Quist

Population demographics of invasive Silver Carp in a Great Plains river network Population demographics of invasive Silver Carp in a Great Plains river network

Objective Knowledge of invasive Silver Carp Hypophthalmichthys molitrix population demographics and distributions may inform estimates of efforts necessary to achieve reductions in abundance and identify locations to conduct removal. Although extensively studied in other parts of their invasive range (e.g., Mississippi and Illinois rivers), less is known regarding Silver Carp population
Authors
Blake Logan, Mark Pegg, Kirk D. Steffensen, Jonathan J. Spurgeon

Quantitative PCR detection of endangered diamond darter Crystallaria Cincotta in environmental DNA: Employing locked nucleic acids and blocking probe for specificity Quantitative PCR detection of endangered diamond darter Crystallaria Cincotta in environmental DNA: Employing locked nucleic acids and blocking probe for specificity

This study presents a quantitative PCR (qPCR) assay for the detection of the endangered diamond darter Crystallaria cincotta from environmental DNA (eDNA) in water samples. The assay design is based on an alignment of mitochondrial cytochrome b DNA sequences from 58 individuals representing 25 percid species. Leveraging genetic differences, a species-specific qPCR assay was designed...
Authors
Andrew P. Kinziger, Cameron M. Layne, Stuart A. Welsh

DeepFaune New England: A species classification model for trail camera images in northeastern North America DeepFaune New England: A species classification model for trail camera images in northeastern North America

The DeepFaune New England model classifies wildlife species in trail camera images, identifying 24 taxa from northeastern North America with high (97%) accuracy. The model was adapted from the DeepFaune model for identifying European wildlife, demonstrating the practicality of transfer learning across continents. The majority of training data is openly licensed, and the model itself is...
Authors
Laurence A. Clarfeld, Katherine D. Gieder, Angela K. Fuller, Zhongqi Miao, Alexej P.K. Sirén, Shevenell M. Webb, Toni Lyn Morelli, Jillian R. Kilborn, Catherine B. Callahan, Leighlan S. Prout, Rachel Cliché, Riley K. Patry, Christopher Bernier, Susan Staats, Therese M. Donovan

A hidden heelsplitter: Distribution of an undescribed endemic freshwater mussel in the Barrens Plateau A hidden heelsplitter: Distribution of an undescribed endemic freshwater mussel in the Barrens Plateau

Malacologists generally acknowledge that the Alasminota holstonia (Tennessee Heelsplitter) populations in the Caney Fork, Elk, and Duck river drainages in the Barrens Plateau region of middle Tennessee likely represent a closely related, but distinct, species, collectively referred to as Alasminota sp. (Barrens Heelsplitter). Recent surveys indicate that the species persists in at least...
Authors
Kristin I. Womble, Amanda E. Rosenberger, Andrew R. Henderson

Satellite tracking supports hypotheses of breeding allochrony and allopatry in the Endangered Pterodroma hasitata (Black-capped Petrel, Diablotin) Satellite tracking supports hypotheses of breeding allochrony and allopatry in the Endangered Pterodroma hasitata (Black-capped Petrel, Diablotin)

Pterodroma hasitata, the Black-capped Petrel (locally known as Diablotin), is the only extant Pterodroma petrel nesting in the Caribbean. The species is listed as globally Endangered by the IUCN and was recently listed as endangered under the U.S. Endangered Species Act. Pterodroma hasitata show a phenotypic gradient, ranging from a darker, smaller form to a paler, heavier form, that is...
Authors
Yvan G. Satgé, J. Brian Patteson, Bradford S. Keitt, Chris P. Gaskin, Patrick G.R. Jodice

Too hot for comfort: Elevated temperatures influence gene expression and exceed thermal tolerance of bigmouth shiners, Ericymba dorsalis Too hot for comfort: Elevated temperatures influence gene expression and exceed thermal tolerance of bigmouth shiners, Ericymba dorsalis

Environmental and associated ecosystem change may affect the persistence of fish species based on their ability to adapt to changing conditions, including decreasing flows and rising water temperatures. Exceeding the thermal tolerances of stream fish will likely result in a loss of ability to maintain metabolic processes. We evaluated the critical thermal maximum (CTmax) of bigmouth...
Authors
Ella K. Humphrey, Jonathan J. Spurgeon, Lizabeth Bowen, Robert E. Wilson, Shannon C. Waters-Dynes, Braxton M. Newkirk, Sarah A. Sonsthagen

Space-based monitoring of penguin diet links sea ice, food webs, and population change Space-based monitoring of penguin diet links sea ice, food webs, and population change

Rapid environmental change is reshaping Antarctic ecosystems through shifts in temperature and sea ice dynamics, with implications for species such as the iconic Adélie penguin (Pygoscelis adeliae). Because Antarctic predators rely on a relatively small number of key prey resources in the region1 whose life histories are intrinsically linked to sea ice,2,3 these abiotic changes are...
Authors
Casey Youngflesh, Christian Joseph Che-Castaldo, Mathew R. Schwaller, Michael J. Polito, Shawn P. Serbin, Heather J. Lynch

Space-based monitoring of penguin diet links sea ice, food webs, and population change Space-based monitoring of penguin diet links sea ice, food webs, and population change

Rapid environmental change poses a threat to Antarctic ecosystems. However, the spatial scale of Antarctica and its extreme environment have precluded a synoptic understanding of the links between environmental change and ecological responses. Combining tools from imaging spectroscopy, stable isotope analysis, and hierarchical statistical modeling, we developed a novel method to quantify...
Authors
Casey Youngflesh, Christian Joseph Che-Castaldo, Mathew R. Schwaller, Michael J. Polito, Shawn P. Serbin, Heather J. Lynch
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