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Publications

Dive into our publications and explore the science from the Environmental Health Program (Toxic Substances Hydrology and Contaminant Biology).

Filter Total Items: 4098

Biogeochemical processes in an urban, restored wetland of San Francisco Bay, California, 2007-2009: Methods and data for plant, sediment and water parameters Biogeochemical processes in an urban, restored wetland of San Francisco Bay, California, 2007-2009: Methods and data for plant, sediment and water parameters

The restoration of 18 acres of historic tidal marsh at Crissy Field has had great success in terms of public outreach and visibility, but less success in terms of revegetated marsh sustainability. Native cordgrass (Spartina foliosa) has experienced dieback and has failed to recolonize following extended flooding events during unintended periodic closures of its inlet channel, which...
Authors
Lisamarie Windham-Myers, Mark C. Marvin-DiPasquale, Jennifer L. Agee, Le H. Kieu, Evangelos Kakouros, Li H. Erikson, Kristen Ward

North American osprey populations and contaminants: Historic and contemporary perspectives North American osprey populations and contaminants: Historic and contemporary perspectives

Osprey (Pandion haliaetus) populations were adversely affected by DDT and perhaps other contaminants in the United States and elsewhere. Reduced productivity, eggshell thinning, and high DDE concentrations in eggs were the signs associated with declining osprey populations in the 1950s, 1960s, and 1970s. The species was one of the first studied on a large scale to bring contaminant...
Authors
Charles J. Henny, Robert A. Grove, James L. Kaiser, Branden L. Johnson

Vadose zone attenuation of organic compounds at a crude oil spill site - Interactions between biogeochemical reactions and multicomponent gas transport Vadose zone attenuation of organic compounds at a crude oil spill site - Interactions between biogeochemical reactions and multicomponent gas transport

Contaminant attenuation processes in the vadose zone of a crude oil spill site near Bemidji, MN have been simulated with a reactive transport model that includes multicomponent gas transport, solute transport, and the most relevant biogeochemical reactions. Dissolution and volatilization of oil components, their aerobic and anaerobic degradation coupled with sequential electron acceptor
Authors
S. Molins, K.U. Mayer, R.T. Amos, Barbara A. Bekins

Patterns of mercury dispersion from local and regional emission sources, rural Central Wisconsin, USA Patterns of mercury dispersion from local and regional emission sources, rural Central Wisconsin, USA

Simultaneous real-time changes in mercury (Hg) speciation-reactive gaseous Hg (RGM), elemental Hg (Hg??), and fine particulate Hg (Hg-PM2.5), were determined from June to November 2007, in ambient air at three locations in rural Central Wisconsin. Known Hg emission sources within the airshed of the monitoring sites include: 1) a 1114 megawatt (MW) coal-fired electric utility generating...
Authors
A. Kolker, M.L. Olson, David P. Krabbenhoft, Michael T. Tate, Mark A. Engle

Mortality of centrarchid fishes in the Potomac drainage: Survey results and overview of potential contributing factors Mortality of centrarchid fishes in the Potomac drainage: Survey results and overview of potential contributing factors

Skin lesions and spring mortality events of smallmouth bass Micropterus dolomieu and selected other species were first noted in the South Branch of the Potomac River in 2002. Since that year morbidity and mortality have also been observed in the Shenandoah and Monocacy rivers. Despite much research, no single pathogen, parasite, or chemical cause for the lesions and mortality has been...
Authors
Vicki Blazer, Luke R. Iwanowicz, Clifford E. Starliper, Steven D. Zaugg, Mark R. Burkhardt, P. Barbash, J.D. Hedrick, S.J. Reeser, J.E. Mullican, J. Kelble

Sediment contamination of residential streams in the metropolitan Kansas City area, USA: Part II. whole-sediment toxicity to the amphipod hyalella azteca Sediment contamination of residential streams in the metropolitan Kansas City area, USA: Part II. whole-sediment toxicity to the amphipod hyalella azteca

This is the second part of a study that evaluates the influence of nonpoint sources on the sediment quality of five adjacent streams within the metropolitan Kansas City area, central United States. Physical, chemical, and toxicity data (Hyalella azteca 28-day whole-sediment toxicity test) for 29 samples collected in 2003 were used for this evaluation, and the potential causes for the...
Authors
J. Tao, Christopher G. Ingersoll, Nile E. Kemble, J.R. Dias, J.B. Murowchick, G. Welker, D. Huggins

A physiologically based toxicokinetic model for methylmercury in female American kestrels A physiologically based toxicokinetic model for methylmercury in female American kestrels

A physiologically based toxicokinetic (PBTK) model was developed to describe the uptake, distribution, and elimination of methylmercury (CH 3Hg) in female American kestrels. The model consists of six tissue compartments corresponding to the brain, liver, kidney, gut, red blood cells, and remaining carcass. Additional compartments describe the elimination of CH3Hg to eggs and growing...
Authors
J.W. Nichols, R.S. Bennett, R. Rossmann, John B. French, K.G. Sappington

Nodeomics: Pathogen detection in vertebrate lymph nodes using meta-transcriptomics Nodeomics: Pathogen detection in vertebrate lymph nodes using meta-transcriptomics

The ongoing emergence of human infections originating from wildlife highlights the need for better knowledge of the microbial community in wildlife species where traditional diagnostic approaches are limited. Here we evaluate the microbial biota in healthy mule deer (Odocoileus hemionus) by analyses of lymph node meta-transcriptomes. cDNA libraries from five individuals and two pools of...
Authors
Nicola E. Wittekindt, Abinash Padhi, Stephan C. Schuster, Ji Qi, Fangqing Zhao, Lynn P. Tomsho, Lindsay R. Kasson, Michael Packard, Paul C. Cross, Mary Poss

Influence of organic carbon loading, sediment associated metal oxide content and sediment grain size distributions upon Cryptosporidium parvum removal during riverbank filtration operations, Sonoma County, CA Influence of organic carbon loading, sediment associated metal oxide content and sediment grain size distributions upon Cryptosporidium parvum removal during riverbank filtration operations, Sonoma County, CA

This study assessed the efficacy for removing Cryptosporidium parvum oocysts of poorly sorted, Fe- and Al-rich, subsurface sediments collected from 0.9 to 4.9 and 1.7–13.9 m below land surface at an operating riverbank filtration (RBF) site (Russian River, Sonoma County, CA). Both formaldehyde-killed oocysts and oocyst-sized (3 μm) microspheres were employed in sediment-packed flow...
Authors
D.W. Metge, R.W. Harvey, G. R. Aiken, R. Anders, G. Lincoln, James Jasperse

Sensitivity of early life stages of freshwater mussels (Unionidae) to acute and chronic toxicity of lead, cadmium, and zinc in water Sensitivity of early life stages of freshwater mussels (Unionidae) to acute and chronic toxicity of lead, cadmium, and zinc in water

Toxicity of lead, cadmium, or zinc to early life stages of freshwater mussels (fatmucket, Lampsilis siliquoidea; Neosho mucket, L. rafinesqueana) was evaluated in 48‐h exposures with mussel larvae (glochidia), in 96‐h exposures with newly transformed (5‐d‐old) and two‐ or six‐month‐old juvenile mussels, or in 28‐d exposures with two‐ or four‐month‐old mussels in reconstituted soft water...
Authors
Ning Wang, Christopher G. Ingersoll, Chris D. Ivey, Douglas K. Hardesty, Thomas W. May, T. Augspurger, A.D. Roberts, E. Van Genderen, M.C. Barnhart

An evaluation of the influence of substrate on the response of juvenile freshwater mussels (fatmucket, Lampsilis siliquoidea) in acute water exposures to ammonia An evaluation of the influence of substrate on the response of juvenile freshwater mussels (fatmucket, Lampsilis siliquoidea) in acute water exposures to ammonia

Acute 96-h ammonia toxicity to three-month-old juvenile mussels (Lampsilis siliquoidea) was evaluated in four treatments (water-only, water-only with feeding, water and soil, and water and sand) using an exposure unit designed to maintain consistent pH and ammonia concentrations in overlying water and in pore water surrounding the substrates. Median effect concentrations (EC50s) for...
Authors
J. Miao, M.C. Barnhart, Eric L. Brunson, Douglas K. Hardesty, Christopher G. Ingersoll, Ning Wang

The annual cycles of phytoplankton biomass The annual cycles of phytoplankton biomass

Terrestrial plants are powerful climate sentinels because their annual cycles of growth, reproduction and senescence are finely tuned to the annual climate cycle having a period of one year. Consistency in the seasonal phasing of terrestrial plant activity provides a relatively low-noise background from which phenological shifts can be detected and attributed to climate change. Here, we...
Authors
Monika Winder, James E. Cloern
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