Publications
Publications from USGS science centers throughout the Southeast Region.
Filter Total Items: 9968
Demographics of a previously undocumented diamondback terrapin (Malaclemys terrapin) population
Coastal habitats are some of the most imperiled due to climate change and anthropogenic activities. As such, it is important to understand population dynamics of the species that may play a role in regulating coastal systems. Diamondback terrapins in Northwest Florida have been understudied, which has resulted in a gap in our knowledge for this region. To help fill this gap, we conducted a capture
Authors
Daniel J. Catizone, Travis M. Thomas, Christina Romagosa, Margaret Lamont
Spatial patterns as long transients in submersed-floating plant competition with biocontrol
A cellular automata model was developed and parameterized to test the effectiveness of application of biological control insects to water hyacinth (Pontederia crassipes), which is an invasive floating plant species in many parts of the world and outcompetes many submersed native aquatic species in southern Florida. In the model, P. crassipes was allowed to compete with Nuttall’s waterweed (Elodea
Authors
Linhao Xu, Don DeAngelis
Visualizing wading bird optimal foraging decisions with aggregation behaviors using individual-based modeling
Foragers on patchy landscapes must efficiently balance time between searching for and consuming resources to meet their daily energetic requirements. Spatial aggregation foraging behaviors may improve foraging efficiency by sharing information on locations of resource hotspots. Wading birds are an example of patch foragers that form colonial aggregations during the breeding season to obtain suffic
Authors
Simeon Yurek, Donald L. DeAngelis, Hyo Won Lee, Stephen Tennenbaum
Evaluation of short-term mussel test for estimating toxicity
Effect concentrations of ammonia, nickel, sodium chloride, and potassium chloride from short-term 7-day tests were compared to those from standard chronic 28-day toxicity tests with juvenile mussels (fatmucket, Lampsilis siliquoidea) to evaluate the sensitivities of the 7-day tests. The effect concentrations for nickel (59 µg Ni/L), chloride (316–519 mg Cl/L, a range from multiple tests), and pota
Authors
Ning Wang, James L. Kunz, Chris D. Ivey, Danielle M. Cleveland, Jeffery Steevens
Artificial intelligence applied to big data reveals that lake invasions are predicted by human traffic and co-occurring invasions
Preventing the spread of aquatic invasive species is an important management action. Identifying the characteristics of lakes that are susceptible to invasion creates an opportunity for management groups to prioritize limited resources for high-risk areas. In this study, we leveraged big data from a popular fishing app and other publicly available sources of environmental and human-use exposure me
Authors
Jessica L. Weir, Wesley Daniel, Kieran Hyder, Christian Skov, Paul A. Venturelli
National Aquatic Environmental DNA Strategy
Aquatic life is the engine of ecosystems and economies. In environments ranging from freshwater through marine, this biodiversity underpins the health, culture, opportunities, and economic wellbeing of the Nation -- from local communities to the entire country. The ability to evaluate the status, trends, and future projections of nature is key to maintaining national prosperity, and this requires
Authors
Kelly D Goodwin, Christina M. Aiello, Mike Weise, Masha Edmondson, Katie Fillingham, Dee Allen, Alicia Amerson, Meredith L. Barton, Abby Benson, Gabrielle Canonico, Zachary Gold, Jennifer Gumm, Margaret Hunter, Nina Joffe, Richard Lance, Alyse Larkin, Ricardo Letelier, Christine Lipsky, Dana McCoskey, Cheryl Morrison, Karen Clark, John A. Darling, Amelia-Juliette Demery, Meredith Everett, Colette Fletcher-Hoppe, Krista M. Nichols, Kim M. Parsons, James Price, Kimberly Puglise, Katie Scholl, Mike K Schwartz, Adam Sepulveda, Janet Shannon, Woody Turner, Timothy White
Potential hazards of polycyclic aromatic hydrocarbons in Great Lakes tributaries using water column and porewater passive samplers and sediment wquilibrium partitioning
The potential for polycyclic aromatic hydrocarbon (PAH)-related effects in benthic organisms is commonly estimated from organic carbon-normalized sediment concentrations based on equilibrium partitioning (EqP). Although this approach is useful for screening purposes, it may overestimate PAH bioavailability by orders of magnitude in some sediments, leading to inflated exposure estimates and potenti
Authors
Austin K. Baldwin, Steven R. Corsi, David Alvarez, David L. Villeneuve, Gerald T. Ankley, Brett R. Blackwell, Marc A. Mills, Peter L. Lenaker, Michelle A. Nott
Temporal habitat use of mule deer in the Pueblo of Santa Ana, New Mexico
Mule deer (Odocoileus hemionus) are important economically, culturally, and recreationally to the Pueblo of Santa Ana in central New Mexico, USA. Studies of habitat selection improve our understanding of mule deer ecology in central New Mexico and provide the Tribe with valuable information for management of mule deer. We used global positioning system telemetry-collar data collected on mule deer
Authors
Daniel E. Bird, Laura D'Acunto, Daniel Ginter, Glenn Harper, Patrick A. Zollner
Streamflow, water quality, and constituent loads and yields, Scituate Reservoir drainage area, Rhode Island, water year 2020
As part of a long-term cooperative program to monitor water quality within the Scituate Reservoir drainage area, the U.S. Geological Survey in cooperation with Providence Water (sometimes known as Providence Water Supply Board) collected streamflow and water-quality data in tributaries to the Scituate Reservoir, Rhode Island. Streamflow and concentrations of chloride and sodium estimated from reco
Authors
Kirk P. Smith
Microbial diversity, genomics, and phage–host interactions of cyanobacterial harmful algal blooms
The occurrence of cyanobacterial harmful algal blooms (cyanoHABs) is related to their physical and chemical environment. However, less is known about their associated microbial interactions and processes. In this study, cyanoHABs were analyzed as a microbial ecosystem, using 1 year of 16S rRNA sequencing and 70 metagenomes collected during the bloom season from Lake Okeechobee (Florida, USA). Biog
Authors
Lauren E Krausfeldt, Elizaveta Shmakova, Hyo Won Lee, Viviana Mazzei, Keith Loftin, Robert P Smith, Emily E. Karwacki, Eric Fortman, B.H. Rosen, Hidetoshi Urakawa, Manoj Dadlani, Rita Colwell, Jose V Lopez
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
The Long-read RNA-Seq Genome Annotation Assessment Project Consortium was formed to evaluate the effectiveness of long-read approaches for transcriptome analysis. Using different protocols and sequencing platforms, the consortium generated over 427 million long-read sequences from complementary DNA and direct RNA datasets, encompassing human, mouse and manatee species. Developers utilized these da
Authors
Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell-Sala, Brian Williams, Jane E. Loveland, Maite De María, Matthew S. Adams, Gabriela Balderrama-Gutierrez, Amit K. Behera, Jose M. Gonzalez Martinez, Toby Hunt, Julien Lagarde, Cindy E. Liang, Haoran Li, Marcus Jerryd Meade, David A. Moraga Amador, Andrey D. Prjibelski, Inanc Birol, Hamed Bostan, Ashley M. Brooks, Muhammed Hasan Çelik, Ying Chen, Mei R.M. Du, Colette Felton, Jonathan Göke, Saber Hafezqorani, Ralf Herwig, Hideya Kawaji, Joseph Lee, Jian-Liang Li, Matthias Lienhard, Alla Mikheenko, Dennis Mulligan, Ka Ming Nip, Mihaela Pertea, Matthew E. Ritchie, Andre D. Sim, Alison D. Tang, Yuk Kei Wan, Changqing Wang, Brandon Y. Wong, Chen Yang, If Barnes, Andrew E. Berry, Salvador Capella-Gutierrez, Alyssa Cousineau, Namrita Dhillon, Jose M. Fernandez-Gonzalez, Luis Ferrández-Peral, Natàlia Garcia-Reyero, Stefan Götz, Carles Hernández-Ferrer, Liudmyla Kondratova, Tianyuan Liu, Alessandra Martinez-Martin, Carlos Menor, Jorge Mestre-Tomás, Jonathan M. Mudge, Nedka G. Panayotova, Alejandro Paniagua, Dmitry Repchevsky, Xingjie Ren, Eric Rouchka, Brandon Saint-John, Enrique Sapena, Leon Sheynkman, Melissa Laird Smith, Marie-Marthe Suner, Hazuki Takahashi, Ingrid A. Youngworth, Piero Carninci, Nancy D. Denslow, Roderic Guigó, Margaret Hunter, Rene Maehr, Yin Shen, Hagen U. Tilgner, Barbara J. Wold, Christopher Vollmers, Adam Frankish, Kin Fai Au, Gloria M. Sheynkman, Ali Mortazavi, Ana Conesa, Angela N. Brooks
Projected sea-level rise and high tide flooding at Timucuan Ecological and Historic Preserve, Florida
IntroductionNational parks and preserves in the South Atlantic-Gulf Region contain valuable coastal habitats such as tidal wetlands and mangrove forests, as well as irreplaceable historic buildings and archeological sites located in low-lying areas. These natural and cultural resources are vulnerable to accelerated sea-level rise and escalating high tide flooding events. Through a Natural Resource
Authors
Hana R. Thurman, Nicholas M. Enwright, Michael J. Osland, Davina L. Passeri, Richard H. Day, Bethanie M. Simons