Publications
Publications from USGS science centers throughout the Southeast Region.
Filter Total Items: 10365
A new DNA extraction method (HV-CTAB-PCI) for amplification of nuclear markers from open ocean-retrieved faeces of an herbivorous marine mammal, the dugong A new DNA extraction method (HV-CTAB-PCI) for amplification of nuclear markers from open ocean-retrieved faeces of an herbivorous marine mammal, the dugong
Non-invasively collected faecal samples are an alternative source of DNA to tissue samples, that may be used in genetic studies of wildlife when direct sampling of animals is difficult. Although several faecal DNA extraction methods exist, their efficacy varies between species. Previous attempts to amplify mitochondrial DNA (mtDNA) markers from faeces of wild dugongs (Dugong dugon) have...
Authors
Vicky Ooi, Lee McMichael, Margaret Hunter, Aristide Takoukam Kamla, Janet M. Lanyon
Evaluation of nearshore bathymetric inversion algorithms using camera observations and synthetic numerical input of surface waves during storms Evaluation of nearshore bathymetric inversion algorithms using camera observations and synthetic numerical input of surface waves during storms
Nearshore bathymetry is difficult to measure using survey methods when wave heights approach the breaking limit. Remote sensing using digital cameras offers a way to observe the surf zone and calculate water depths based on phase speed but comes with its challenges of potentially noisy data that can introduce error into estimates of frequency and wavenumber used in phase speed...
Authors
Elora Oades, Ryan Mulligan, Margaret L. Palmsten
Modeling the effects of large-scale interior headland restoration on tidal hydrodynamics and salinity transport in an open coast, marine-dominant estuary Modeling the effects of large-scale interior headland restoration on tidal hydrodynamics and salinity transport in an open coast, marine-dominant estuary
The effects of large-scale interior headland restoration on tidal hydrodynamics and salinity transport in an open coast, marine dominant estuary (Grand Bay, Alabama, U.S.A) are investigated using a two-dimensional model, the Discontinuous-Galerkin Shallow Water Equations Model (DG-SWEM). Three restoration alternatives are simulated for present-day conditions, as well as under 0.5 m of...
Authors
Davina Passeri, Robert L. Jenkins, Autumn C. Poisson, Matthew V. Bilskie, Peter Bacopoulos
Is chemical control for crayfish in hatchery fish shipments practical? Is chemical control for crayfish in hatchery fish shipments practical?
Invasive crayfish (family Cambaridae) displace native crayfish species and alter aquatic habitat, community structure, and ecosystem function. We evaluated whether chemical control can be a reliable control agent for crayfish to ensure that shipments from fish hatcheries did not result in new infestations of invasive crayfish. A series of acute (≤1 h) toxicity tests were conducted to...
Authors
Ann Allert, Daniel J. Westrich, David W. Whites, Katrina Knott, Nathan Storts, Robert J. DiStefano
A century of hydrologic data collection prepares western Long Island for current and future water-resources challenges A century of hydrologic data collection prepares western Long Island for current and future water-resources challenges
Freshwater is a vital natural resource. New York is a water-rich State; however, even here, the economical use of water resources is needed to ensure there is enough water of adequate quality for human and ecological needs—now and into the future. Nowhere in New York is this more evident than on Long Island where public-water supply is obtained from the sole-source aquifers directly...
Authors
Robert F. Breault, John P. Masterson, Ronald Busciolano, Irene Fisher
A comprehensive plan for in-water sea turtle data collection in the US Gulf of Mexico A comprehensive plan for in-water sea turtle data collection in the US Gulf of Mexico
The Deepwater Horizon Open Ocean Trustee Implementation Group (OO TIG) released a Final Open Ocean Restoration Plan 2 in 2019, which included a project titled Developing a Gulf-wide Comprehensive Plan for In-water Sea Turtle Data Collection. This document, A Comprehensive Plan for In-water Sea Turtle Data Collection in the US Gulf of Mexico (Plan), is the culmination of that OO TIG...
Authors
Kristen Hart, Pamela T. Plotkin, Christopher Sasso, Blair E. Witherington
Condition and coloration of lingual lures of Alligator Snapping Turtles Condition and coloration of lingual lures of Alligator Snapping Turtles
The lingual lures of Macrochelys (alligator snapping turtles) are believed to be the only prey-capturing lures within the mouths of modern reptiles. To date, no formal assessment of lure condition in Macrochelys has been published, and few researchers record lure data. Herein, we report damaged or missing lures from 25 Macrochelys temminckii (Alligator Snapping Turtle; 7 adults, 18...
Authors
Brad Glorioso, John L. Carr, Carl J. Franklin, Mandi Gordon, Aaron C. Johnson, Ethan J. Kessler, Eric Munscher, Luke Pearson, Viviana Ricardez, Arron Tuggle
Dietary niche of three omnivorous turtle species in a northern Florida river: Insights from stable isotope analysis Dietary niche of three omnivorous turtle species in a northern Florida river: Insights from stable isotope analysis
Macrochelys suwanniensis (Suwannee Alligator Snapping Turtle) coexists with 2 other native large omnivorous turtle species (Chelydra serpentina [Snapping Turtle] and Trachemys scripta scripta [Yellow-bellied Slider]) in a 9-km section of the Santa Fe River in northern Florida. A major shift in dominant submersed aquatic vegetation prompted us to quantify trophic position and niche...
Authors
Mathew Denton, Gerald R. Johnston, Travis M. Thomas, Hardin Waddle, Susan Walls, Kristen Hart
Application of the Precipitation-Runoff Modeling System (PRMS) to simulate the streamflows and water balance of the Red River Basin, 1980–2016 Application of the Precipitation-Runoff Modeling System (PRMS) to simulate the streamflows and water balance of the Red River Basin, 1980–2016
The Precipitation-Runoff Modeling System (PRMS) was used to develop and calibrate a streamflow and water balance model for the Red River Basin as part of the U.S. Geological Survey National Water Census, a research effort focused on developing innovative water accounting tools and conducting assessments of water use and availability at regional and national spatial scales. The PRMS is a
Authors
Victor L. Roland
Reevaluation of 2,3,7,8-tetrachlorodibenzo-p-dioxin equivalency factors for dioxin-like polychlorinated dibenzo-p-dioxins, polychlorinated dibenzofurans, and polychlorinated biphenyls for fishes Reevaluation of 2,3,7,8-tetrachlorodibenzo-p-dioxin equivalency factors for dioxin-like polychlorinated dibenzo-p-dioxins, polychlorinated dibenzofurans, and polychlorinated biphenyls for fishes
An expert meeting was organized by the World Health Organization (WHO) in 1997 to streamline assessments of risk posed by mixtures of dioxin-like chemicals (DLCs) through development of 2,3,7,8-tetrachlorodibenzo-p-dioxin (2,3,7,8-TCDD) equivalency factors (TEFs) for mammals, birds, and fishes. No reevaluation has been performed for fish TEFs. Therefore, the objective of the present...
Authors
Jon A. Doering, Donald E. Tillitt, Steve Wiseman
Integrated analysis shows how the effects of extreme flooding events propagate through fish communities to impact amphibians Integrated analysis shows how the effects of extreme flooding events propagate through fish communities to impact amphibians
Research Highlight: Davis, C. L., Walls, S. C., Barichivich, W. J., Brown, M. E., & Miller, D. A. (2022). Disentangling direct and indirect effects of extreme events on coastal wetland communities. Journal of Animal Ecology, https://doi.org/10.1111/1365-2656.13874. Catastrophic events such as floods, hurricanes, winter storms, droughts and wildfires increasingly touch our lives either...
Authors
James Grace
River water quality in the Delaware River Basin—Concentrations and trends through 2018 River water quality in the Delaware River Basin—Concentrations and trends through 2018
Introduction The Delaware River Basin provides drinking water to 13.3 million people and supports endangered species, provides recreational opportunities, and is an essential resource to regional industries. The efforts of Federal and State governments have substantially improved overall water quality in the basin, which had been severely degraded prior to the mid-20th century. Recent...
Authors
Megan E. Shoda, Emily G Gain, Jennifer C. Murphy